Literature DB >> 23476499

Poly[bis-(1,3-dimethyl-1,3-diazinan-2-one)(2,5-dioxidoterephthalato)zirconium(IV)].

Matthias Maercz1, David Stephen Wragg, Pascal Daniel Croumbie Dietzel, Helmer Fjellvåg.   

Abstract

In the title coordination polymer, [Zr(C8H2O6)(C6H12N2O)2] n , the Zr(IV) atom, which lies on a crystallographic twofold rotation axis, is coordinated by two O,O'-bidentate 2,5-dioxidoterephthalate (DHTP(4-)) ligands and two O-bonded 1,3-dimethyl-1,3-diazinan-2-one (DMPU) ligands (the latter in a cis orientation) in a distorted ZrO6 octa-hedral geometry. The deprotonated hy-droxy and carb-oxy O atoms of the DHTP(4-) ligand chelate the Zr(IV) ion via a six-membered ring; the dihedral angle between the carboxyl-ate group and the aromatic ring is 19.94 (11)°. The DHTP(4-) ligand is completed by crystallographic inversion symmetry and coordinates to two Zr(IV) atoms, thereby forming polymeric zigzag chains propagating in the c-axis direction.

Entities:  

Year:  2013        PMID: 23476499      PMCID: PMC3588472          DOI: 10.1107/S1600536813003437

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For examples of DHTP-containing MOFs, see: Dietzel et al. (2005 ▶, 2006 ▶). For examples of zirconium MOFs, see: Chavan et al. (2012 ▶). For a related structure, see: Maercz et al. (2013 ▶).

Experimental

Crystal data

[Zr(C8H2O6)(C6H12N2O)2] M = 541.67 Monoclinic, a = 18.761 (2) Å b = 8.4049 (10) Å c = 14.8816 (17) Å β = 102.239 (1)° V = 2293.3 (5) Å3 Z = 4 Mo Kα radiation μ = 0.53 mm−1 T = 293 K 0.10 × 0.08 × 0.06 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2003 ▶) T min = 0.949, T max = 0.969 8477 measured reflections 2730 independent reflections 2437 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.096 S = 1.07 2730 reflections 150 parameters H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −0.32 e Å−3 Data collection: SMART (Bruker, 2003 ▶); cell refinement: SAINT (Bruker, 2003 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813003437/hb7026sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813003437/hb7026Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zr(C8H2O6)(C6H12N2O)2]F(000) = 1112
Mr = 541.67Dx = 1.569 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 18.761 (2) ÅCell parameters from 2840 reflections
b = 8.4049 (10) Åθ = 2.8–24.3°
c = 14.8816 (17) ŵ = 0.53 mm1
β = 102.239 (1)°T = 293 K
V = 2293.3 (5) Å3Block, colourless
Z = 40.10 × 0.08 × 0.06 mm
Bruker SMART CCD diffractometer2730 independent reflections
Radiation source: fine-focus sealed tube2437 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.024
phi and ω scansθmax = 28.8°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2003)h = −24→25
Tmin = 0.949, Tmax = 0.969k = −10→10
8477 measured reflectionsl = −19→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.096H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0462P)2 + 2.0694P] where P = (Fo2 + 2Fc2)/3
2730 reflections(Δ/σ)max < 0.001
150 parametersΔρmax = 0.39 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.01168 (12)0.8750 (3)0.06523 (15)0.0370 (5)
C2−0.04708 (11)0.9809 (3)0.06010 (16)0.0389 (5)
C3−0.10053 (13)0.9651 (4)0.12208 (19)0.0494 (6)
C40.05755 (12)0.8979 (3)0.00446 (16)0.0409 (5)
H40.09680.82920.00720.049*
C50.13245 (14)0.4514 (3)0.28509 (18)0.0460 (6)
C60.1951 (3)0.2463 (6)0.2172 (4)0.1152 (19)
H6A0.18110.14380.23800.138*
H6B0.20430.23280.15590.138*
C70.2608 (3)0.3007 (6)0.2785 (6)0.137 (3)
H7A0.28130.38740.24910.164*
H7B0.29610.21460.28800.164*
C80.25001 (19)0.3551 (5)0.3685 (4)0.0998 (15)
H8A0.24470.26350.40610.120*
H8B0.29270.41390.39930.120*
C90.1770 (2)0.5490 (5)0.4385 (2)0.0860 (12)
H9A0.22010.53960.48620.129*
H9B0.13570.51040.46070.129*
H9C0.16940.65870.42110.129*
C100.0730 (3)0.3413 (7)0.1388 (3)0.1198 (18)
H10A0.08490.27120.09320.180*
H10B0.05940.44350.11170.180*
H10C0.03310.29770.16170.180*
N10.18563 (12)0.4566 (3)0.35990 (19)0.0583 (6)
N20.13613 (17)0.3589 (3)0.2142 (2)0.0732 (8)
O10.07673 (10)0.5374 (2)0.28218 (12)0.0532 (5)
O2−0.07967 (9)0.8873 (2)0.19808 (13)0.0519 (5)
O30.02342 (9)0.7526 (2)0.12481 (12)0.0424 (4)
O4−0.16069 (11)1.0250 (4)0.10048 (17)0.0870 (9)
Zr10.00000.72101 (4)0.25000.03776 (12)
U11U22U33U12U13U23
C10.0321 (10)0.0424 (14)0.0359 (11)0.0017 (9)0.0060 (8)−0.0032 (9)
C20.0295 (10)0.0489 (15)0.0387 (12)0.0026 (10)0.0086 (9)−0.0011 (10)
C30.0397 (13)0.0587 (17)0.0531 (15)0.0122 (12)0.0173 (11)0.0085 (12)
C40.0306 (10)0.0495 (15)0.0432 (12)0.0076 (10)0.0095 (9)0.0001 (10)
C50.0470 (13)0.0399 (14)0.0542 (15)0.0022 (11)0.0176 (11)0.0035 (11)
C60.145 (5)0.082 (3)0.140 (5)0.039 (3)0.078 (4)−0.006 (3)
C70.083 (3)0.077 (3)0.277 (9)0.013 (2)0.098 (5)−0.021 (4)
C80.0489 (19)0.069 (3)0.169 (5)0.0175 (18)−0.004 (2)0.017 (3)
C90.086 (2)0.094 (3)0.062 (2)0.013 (2)−0.0200 (18)−0.0037 (19)
C100.172 (5)0.107 (4)0.069 (3)0.012 (4)0.001 (3)−0.037 (3)
N10.0422 (12)0.0490 (15)0.0787 (17)0.0082 (10)0.0014 (11)0.0044 (12)
N20.097 (2)0.0551 (17)0.0735 (18)0.0136 (16)0.0320 (16)−0.0102 (14)
O10.0458 (10)0.0629 (13)0.0478 (10)0.0151 (9)0.0028 (8)−0.0043 (9)
O20.0445 (9)0.0666 (13)0.0492 (10)0.0150 (9)0.0205 (8)0.0134 (9)
O30.0408 (9)0.0467 (11)0.0410 (9)0.0073 (7)0.0117 (7)0.0035 (7)
O40.0529 (12)0.134 (2)0.0840 (16)0.0459 (14)0.0373 (11)0.0487 (16)
Zr10.03075 (17)0.0470 (2)0.03504 (18)0.0000.00586 (12)0.000
C1—O31.346 (3)C7—H7B0.9700
C1—C41.388 (3)C8—N11.462 (4)
C1—C21.406 (3)C8—H8A0.9700
C2—C4i1.386 (3)C8—H8B0.9700
C2—C31.505 (3)C9—N11.442 (4)
C3—O41.215 (3)C9—H9A0.9600
C3—O21.293 (3)C9—H9B0.9600
C4—C2i1.386 (3)C9—H9C0.9600
C4—H40.9300C10—N21.456 (5)
C5—O11.264 (3)C10—H10A0.9600
C5—N21.325 (4)C10—H10B0.9600
C5—N11.329 (3)C10—H10C0.9600
C6—C71.443 (8)Zr1—O12.0955 (18)
C6—N21.449 (5)Zr2—O22.0723 (18)
C6—H6A0.9700Zr3—O32.0203 (17)
C6—H6B0.9700Zr1—O3ii2.0203 (17)
C7—C81.470 (8)Zr1—O2ii2.0723 (18)
C7—H7A0.9700Zr1—O1ii2.0955 (18)
O3—C1—C4119.9 (2)H9A—C9—H9B109.5
O3—C1—C2122.5 (2)N1—C9—H9C109.5
C4—C1—C2117.7 (2)H9A—C9—H9C109.5
C4i—C2—C1119.8 (2)H9B—C9—H9C109.5
C4i—C2—C3118.3 (2)N2—C10—H10A109.5
C1—C2—C3121.8 (2)N2—C10—H10B109.5
O4—C3—O2122.2 (2)H10A—C10—H10B109.5
O4—C3—C2120.2 (2)N2—C10—H10C109.5
O2—C3—C2117.6 (2)H10A—C10—H10C109.5
C2i—C4—C1122.5 (2)H10B—C10—H10C109.5
C2i—C4—H4118.7C5—N1—C9120.3 (2)
C1—C4—H4118.7C5—N1—C8120.9 (3)
O1—C5—N2119.4 (3)C9—N1—C8118.4 (3)
O1—C5—N1118.6 (2)C5—N2—C6121.8 (4)
N2—C5—N1122.0 (3)C5—N2—C10120.2 (3)
C7—C6—N2110.9 (4)C6—N2—C10116.7 (4)
C7—C6—H6A109.5C5—O1—Zr1162.17 (19)
N2—C6—H6A109.5C3—O2—Zr1136.71 (16)
C7—C6—H6B109.5C1—O3—Zr1132.13 (15)
N2—C6—H6B109.5O3—Zr1—O3ii164.90 (10)
H6A—C6—H6B108.0O3—Zr1—O2ii88.54 (7)
C6—C7—C8114.2 (4)O3ii—Zr1—O2ii81.27 (7)
C6—C7—H7A108.7O3—Zr1—O281.27 (7)
C8—C7—H7A108.7O3ii—Zr1—O288.54 (7)
C6—C7—H7B108.7O2ii—Zr1—O295.19 (12)
C8—C7—H7B108.7O3—Zr1—O1ii99.16 (7)
H7A—C7—H7B107.6O3ii—Zr1—O1ii91.97 (7)
N1—C8—C7111.9 (4)O2ii—Zr1—O1ii171.16 (7)
N1—C8—H8A109.2O2—Zr1—O1ii90.30 (8)
C7—C8—H8A109.2O3—Zr1—O191.97 (7)
N1—C8—H8B109.2O3ii—Zr1—O199.16 (7)
C7—C8—H8B109.2O2ii—Zr1—O190.30 (8)
H8A—C8—H8B107.9O2—Zr1—O1171.16 (7)
N1—C9—H9A109.5O1ii—Zr1—O185.13 (11)
N1—C9—H9B109.5
O3—C1—C2—C4i−178.2 (2)C7—C6—N2—C10164.6 (5)
C4—C1—C2—C4i0.3 (4)N2—C5—O1—Zr1−75.3 (7)
O3—C1—C2—C30.7 (4)N1—C5—O1—Zr1104.9 (6)
C4—C1—C2—C3179.2 (2)O4—C3—O2—Zr1160.2 (3)
C4i—C2—C3—O420.1 (4)C2—C3—O2—Zr1−20.1 (4)
C1—C2—C3—O4−158.8 (3)C4—C1—O3—Zr1152.68 (18)
C4i—C2—C3—O2−159.5 (3)C2—C1—O3—Zr1−28.8 (3)
C1—C2—C3—O221.6 (4)C1—O3—Zr1—O3ii−23.03 (19)
O3—C1—C4—C2i178.2 (2)C1—O3—Zr1—O2ii−70.4 (2)
C2—C1—C4—C2i−0.3 (4)C1—O3—Zr1—O225.1 (2)
N2—C6—C7—C847.7 (6)C1—O3—Zr1—O1ii114.0 (2)
C6—C7—C8—N1−44.6 (6)C1—O3—Zr1—O1−160.7 (2)
O1—C5—N1—C94.8 (4)C3—O2—Zr1—O30.6 (3)
N2—C5—N1—C9−175.0 (3)C3—O2—Zr1—O3ii169.4 (3)
O1—C5—N1—C8177.6 (3)C3—O2—Zr1—O2ii88.3 (3)
N2—C5—N1—C8−2.2 (5)C3—O2—Zr1—O1ii−98.6 (3)
C7—C8—N1—C521.3 (5)C3—O2—Zr1—O1−39.9 (6)
C7—C8—N1—C9−165.7 (4)C5—O1—Zr1—O329.7 (6)
O1—C5—N2—C6−173.7 (3)C5—O1—Zr1—O3ii−140.1 (6)
N1—C5—N2—C66.0 (5)C5—O1—Zr1—O2ii−58.9 (6)
O1—C5—N2—C10−7.7 (5)C5—O1—Zr1—O269.6 (9)
N1—C5—N2—C10172.1 (4)C5—O1—Zr1—O1ii128.7 (6)
C7—C6—N2—C5−28.8 (6)
Table 1

Selected bond lengths (Å)

Zr1—O12.0955 (18)
Zr2—O22.0723 (18)
Zr3—O32.0203 (17)
  5 in total

1.  An in situ high-temperature single-crystal investigation of a dehydrated metal-organic framework compound and field-induced magnetization of one-dimensional metal-oxygen chains.

Authors:  Pascal D C Dietzel; Yusuke Morita; Richard Blom; Helmer Fjellvåg
Journal:  Angew Chem Int Ed Engl       Date:  2005-10-07       Impact factor: 15.336

2.  Hydrogen adsorption in a nickel based coordination polymer with open metal sites in the cylindrical cavities of the desolvated framework.

Authors:  Pascal D C Dietzel; Barbara Panella; Michael Hirscher; Richard Blom; Helmer Fjellvåg
Journal:  Chem Commun (Camb)       Date:  2006-01-20       Impact factor: 6.222

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  H2 storage in isostructural UiO-67 and UiO-66 MOFs.

Authors:  Sachin Chavan; Jenny G Vitillo; Diego Gianolio; Olena Zavorotynska; Bartolomeo Civalleri; Søren Jakobsen; Merete H Nilsen; Loredana Valenzano; Carlo Lamberti; Karl Petter Lillerud; Silvia Bordiga
Journal:  Phys Chem Chem Phys       Date:  2011-12-20       Impact factor: 3.676

5.  Poly[bis-(1,3-dimethyl-imidazolidin-2-one)(μ2-2,5-dioxidoterephthalato)zirconium(IV)].

Authors:  Matthias Maercz; David Stephen Wragg; Pascal Daniel Croumbie Dietzel; Helmer Fjellvåg
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-02-16
  5 in total

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