Literature DB >> 23476453

(Z)-1-Chloro-1-[2-(2-nitro-phen-yl)hydrazinyl-idene]propan-2-one.

Rami Y Morjan1, Bassam A Abu Thaher, Dieter Schollmeyer, Adel M Awadallah, John M Gardiner.   

Abstract

The title mol-ecule, C9H8ClN3O3, lies on a mirror plane. Intra-molecular N-H⋯O and N-H⋯Cl hydrogen bonds occur. One of the nitro O atoms is disordered (site occupancy ratio = 0.40:0.10).

Entities:  

Year:  2012        PMID: 23476453      PMCID: PMC3588268          DOI: 10.1107/S1600536812049938

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of the synthesis and for the importance of hydrazonoyl halides in organic synthesis and their biological activity and metabolism, see: Awadallah et al. (2006 ▶, 2008 ▶); Budarina et al. (2007 ▶); Shawalia et al. (2009 ▶); Thaher et al. (2002 ▶).

Experimental

Crystal data

C9H8ClN3O3 M = 241.63 Orthorhombic, a = 14.1344 (10) Å b = 6.5420 (5) Å c = 11.3748 (8) Å V = 1051.80 (13) Å3 Z = 4 Mo Kα radiation μ = 0.36 mm−1 T = 173 K 0.25 × 0.13 × 0.05 mm

Data collection

Bruker APEXII diffractometer 6908 measured reflections 1365 independent reflections 1003 reflections with I > 2σ(I) R int = 0.045

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.121 S = 1.05 1365 reflections 109 parameters H-atom parameters constrained Δρmax = 0.58 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812049938/rn2108sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812049938/rn2108Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812049938/rn2108Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H8ClN3O3F(000) = 496
Mr = 241.63Dx = 1.526 Mg m3
Orthorhombic, PnmaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2nCell parameters from 1147 reflections
a = 14.1344 (10) Åθ = 2.3–25.8°
b = 6.5420 (5) ŵ = 0.36 mm1
c = 11.3748 (8) ÅT = 173 K
V = 1051.80 (13) Å3Needle, yellow
Z = 40.25 × 0.13 × 0.05 mm
Bruker APEXII diffractometer1003 reflections with I > 2σ(I)
Radiation source: sealed TubeRint = 0.045
Graphite monochromatorθmax = 27.9°, θmin = 2.3°
CCD scanh = −18→18
6908 measured reflectionsk = −8→8
1365 independent reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0651P)2 + 0.198P] where P = (Fo2 + 2Fc2)/3
1365 reflections(Δ/σ)max = 0.001
109 parametersΔρmax = 0.58 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cl10.17306 (5)0.25000.30944 (6)0.0416 (3)
C1−0.00994 (17)0.25000.0079 (2)0.0227 (5)
C20.02943 (17)0.2500−0.1054 (2)0.0240 (5)
C3−0.02668 (19)0.2500−0.2057 (2)0.0276 (6)
H30.00120.2500−0.27980.033*
C4−0.12361 (18)0.2500−0.1949 (2)0.0294 (6)
H4−0.16170.2500−0.26160.035*
C5−0.16419 (17)0.2500−0.0832 (2)0.0302 (6)
H5−0.22970.2500−0.07590.036*
C6−0.10892 (18)0.25000.0161 (2)0.0268 (6)
H6−0.13750.25000.08980.032*
N70.13162 (16)0.2500−0.1243 (2)0.0357 (6)
O80.18551 (13)0.2500−0.04010 (17)0.0413 (5)
O90.1605 (11)0.2922 (10)−0.2234 (15)0.031 (9)0.40
O9B0.156 (5)0.135 (13)−0.225 (6)0.033 (15)0.10
N100.04475 (14)0.25000.10920 (17)0.0270 (5)
H100.11060.25000.10910.040*
N110.00142 (15)0.25000.21389 (18)0.0259 (5)
C120.05021 (18)0.25000.3081 (2)0.0277 (6)
C130.0018 (2)0.25000.4244 (2)0.0362 (7)
O140.04865 (17)0.25000.51438 (17)0.0502 (6)
C15−0.1042 (2)0.25000.4226 (3)0.0517 (9)
H15A−0.12740.25000.50190.078*
H15B−0.12650.13020.38260.078*
U11U22U33U12U13U23
Cl10.0303 (4)0.0640 (5)0.0305 (4)0.000−0.0087 (3)0.000
C10.0224 (12)0.0260 (13)0.0198 (11)0.000−0.0032 (9)0.000
C20.0186 (11)0.0320 (14)0.0215 (12)0.0000.0008 (9)0.000
C30.0321 (13)0.0315 (14)0.0192 (12)0.0000.0016 (10)0.000
C40.0270 (13)0.0376 (15)0.0236 (13)0.000−0.0081 (11)0.000
C50.0196 (11)0.0413 (16)0.0297 (14)0.000−0.0047 (10)0.000
C60.0234 (12)0.0373 (15)0.0197 (12)0.0000.0029 (10)0.000
N70.0293 (12)0.0544 (16)0.0235 (12)0.0000.0018 (10)0.000
O80.0236 (10)0.0659 (15)0.0344 (11)0.000−0.0027 (9)0.000
O90.031 (2)0.03 (3)0.028 (2)0.002 (5)0.0129 (16)0.006 (6)
O9B0.040 (10)0.03 (4)0.027 (8)−0.010 (18)0.001 (7)−0.016 (19)
N100.0214 (10)0.0401 (13)0.0194 (10)0.000−0.0004 (8)0.000
N110.0265 (11)0.0307 (12)0.0206 (10)0.0000.0007 (9)0.000
C120.0277 (13)0.0352 (15)0.0203 (13)0.000−0.0011 (10)0.000
C130.0430 (16)0.0457 (18)0.0199 (12)0.0000.0012 (12)0.000
O140.0572 (14)0.0749 (17)0.0186 (10)0.000−0.0033 (10)0.000
C150.0446 (18)0.079 (3)0.0315 (17)0.0000.0111 (15)0.000
Cl1—C121.736 (3)N7—O91.230 (16)
C1—N101.388 (3)N7—O9i1.230 (16)
C1—C61.402 (3)N7—O9B1.42 (6)
C1—C21.403 (3)N7—O9Bi1.42 (6)
C2—C31.390 (3)O9—O9i0.553 (13)
C2—N71.460 (3)O9B—O9Bi1.50 (17)
C3—C41.376 (4)N10—N111.339 (3)
C3—H30.9300N10—H100.9315
C4—C51.394 (4)N11—C121.275 (3)
C4—H40.9300C12—C131.489 (4)
C5—C61.374 (3)C13—O141.220 (3)
C5—H50.9300C13—C151.497 (4)
C6—H60.9300C15—H15A0.9600
N7—O81.224 (3)C15—H15B0.9600
N10—C1—C6120.0 (2)O8—N7—O9Bi119 (3)
N10—C1—C2122.8 (2)O9—N7—O9Bi19 (3)
C6—C1—C2117.2 (2)O9i—N7—O9Bi45 (4)
C3—C2—C1121.8 (2)O9B—N7—O9Bi64 (7)
C3—C2—N7116.3 (2)O8—N7—C2120.0 (2)
C1—C2—N7121.8 (2)O9—N7—C2117.6 (8)
C4—C3—C2119.7 (2)O9i—N7—C2117.6 (8)
C4—C3—H3120.2O9B—N7—C2111 (2)
C2—C3—H3120.2O9Bi—N7—C2111 (2)
C3—C4—C5119.4 (2)O9i—O9—N777.0 (3)
C3—C4—H4120.3N7—O9B—O9Bi58 (4)
C5—C4—H4120.3N11—N10—C1118.9 (2)
C6—C5—C4121.1 (2)N11—N10—H10117.3
C6—C5—H5119.5C1—N10—H10123.8
C4—C5—H5119.5C12—N11—N10120.0 (2)
C5—C6—C1120.8 (2)N11—C12—C13119.9 (2)
C5—C6—H6119.6N11—C12—Cl1123.26 (19)
C1—C6—H6119.6C13—C12—Cl1116.89 (18)
O8—N7—O9120.7 (8)O14—C13—C12119.7 (3)
O8—N7—O9i120.7 (8)O14—C13—C15123.7 (3)
O9—N7—O9i26.0 (6)C12—C13—C15116.6 (2)
O8—N7—O9B119 (3)C13—C15—H15A109.2
O9—N7—O9B45 (4)C13—C15—H15B109.6
O9i—N7—O9B19 (3)H15A—C15—H15B109.5
N10—C1—C2—C3180.0C3—C2—N7—O9Bi35 (4)
C6—C1—C2—C3−0.0C1—C2—N7—O9Bi−145 (4)
N10—C1—C2—N7−0.0O8—N7—O9—O9i97.9 (3)
C6—C1—C2—N7180.0O9B—N7—O9—O9i−4 (5)
C1—C2—C3—C40.0O9Bi—N7—O9—O9i−172 (11)
N7—C2—C3—C4180.0C2—N7—O9—O9i−96.9 (3)
C2—C3—C4—C5−0.0O8—N7—O9B—O9Bi−110 (2)
C3—C4—C5—C60.0O9—N7—O9B—O9Bi−4 (6)
C4—C5—C6—C1−0.0O9i—N7—O9B—O9Bi−9 (13)
N10—C1—C6—C5180.0C2—N7—O9B—O9Bi104 (3)
C2—C1—C6—C50.0C6—C1—N10—N11−0.0
C3—C2—N7—O8180.0C2—C1—N10—N11180.0
C1—C2—N7—O80.0C1—N10—N11—C12180.0
C3—C2—N7—O914.7 (4)N10—N11—C12—C13180.0
C1—C2—N7—O9−165.3 (4)N10—N11—C12—Cl1−0.0
C3—C2—N7—O9i−14.7 (4)N11—C12—C13—O14180.0
C1—C2—N7—O9i165.3 (4)Cl1—C12—C13—O140.0
C3—C2—N7—O9B−35 (4)N11—C12—C13—C15−0.0
C1—C2—N7—O9B145 (4)Cl1—C12—C13—C15180.0
D—H···AD—HH···AD···AD—H···A
N10—H10···Cl10.932.442.912 (2)111
N10—H10···O80.932.002.616 (3)122
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N10—H10⋯Cl10.932.442.912 (2)111
N10—H10⋯O80.932.002.616 (3)122
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