| Literature DB >> 23476453 |
Rami Y Morjan1, Bassam A Abu Thaher, Dieter Schollmeyer, Adel M Awadallah, John M Gardiner.
Abstract
The title mol-ecule, C9H8ClN3O3, lies on a mirror plane. Intra-molecular N-H⋯O and N-H⋯Cl hydrogen bonds occur. One of the nitro O atoms is disordered (site occupancy ratio = 0.40:0.10).Entities:
Year: 2012 PMID: 23476453 PMCID: PMC3588268 DOI: 10.1107/S1600536812049938
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H8ClN3O3 | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2ac 2n | Cell parameters from 1147 reflections |
| θ = 2.3–25.8° | |
| µ = 0.36 mm−1 | |
| Needle, yellow | |
| 0.25 × 0.13 × 0.05 mm |
| Bruker APEXII diffractometer | 1003 reflections with |
| Radiation source: sealed Tube | |
| Graphite monochromator | θmax = 27.9°, θmin = 2.3° |
| CCD scan | |
| 6908 measured reflections | |
| 1365 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1365 reflections | (Δ/σ)max = 0.001 |
| 109 parameters | Δρmax = 0.58 e Å−3 |
| 0 restraints | Δρmin = −0.28 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| Cl1 | 0.17306 (5) | 0.2500 | 0.30944 (6) | 0.0416 (3) | |
| C1 | −0.00994 (17) | 0.2500 | 0.0079 (2) | 0.0227 (5) | |
| C2 | 0.02943 (17) | 0.2500 | −0.1054 (2) | 0.0240 (5) | |
| C3 | −0.02668 (19) | 0.2500 | −0.2057 (2) | 0.0276 (6) | |
| H3 | 0.0012 | 0.2500 | −0.2798 | 0.033* | |
| C4 | −0.12361 (18) | 0.2500 | −0.1949 (2) | 0.0294 (6) | |
| H4 | −0.1617 | 0.2500 | −0.2616 | 0.035* | |
| C5 | −0.16419 (17) | 0.2500 | −0.0832 (2) | 0.0302 (6) | |
| H5 | −0.2297 | 0.2500 | −0.0759 | 0.036* | |
| C6 | −0.10892 (18) | 0.2500 | 0.0161 (2) | 0.0268 (6) | |
| H6 | −0.1375 | 0.2500 | 0.0898 | 0.032* | |
| N7 | 0.13162 (16) | 0.2500 | −0.1243 (2) | 0.0357 (6) | |
| O8 | 0.18551 (13) | 0.2500 | −0.04010 (17) | 0.0413 (5) | |
| O9 | 0.1605 (11) | 0.2922 (10) | −0.2234 (15) | 0.031 (9) | 0.40 |
| O9B | 0.156 (5) | 0.135 (13) | −0.225 (6) | 0.033 (15) | 0.10 |
| N10 | 0.04475 (14) | 0.2500 | 0.10920 (17) | 0.0270 (5) | |
| H10 | 0.1106 | 0.2500 | 0.1091 | 0.040* | |
| N11 | 0.00142 (15) | 0.2500 | 0.21389 (18) | 0.0259 (5) | |
| C12 | 0.05021 (18) | 0.2500 | 0.3081 (2) | 0.0277 (6) | |
| C13 | 0.0018 (2) | 0.2500 | 0.4244 (2) | 0.0362 (7) | |
| O14 | 0.04865 (17) | 0.2500 | 0.51438 (17) | 0.0502 (6) | |
| C15 | −0.1042 (2) | 0.2500 | 0.4226 (3) | 0.0517 (9) | |
| H15A | −0.1274 | 0.2500 | 0.5019 | 0.078* | |
| H15B | −0.1265 | 0.1302 | 0.3826 | 0.078* |
| Cl1 | 0.0303 (4) | 0.0640 (5) | 0.0305 (4) | 0.000 | −0.0087 (3) | 0.000 |
| C1 | 0.0224 (12) | 0.0260 (13) | 0.0198 (11) | 0.000 | −0.0032 (9) | 0.000 |
| C2 | 0.0186 (11) | 0.0320 (14) | 0.0215 (12) | 0.000 | 0.0008 (9) | 0.000 |
| C3 | 0.0321 (13) | 0.0315 (14) | 0.0192 (12) | 0.000 | 0.0016 (10) | 0.000 |
| C4 | 0.0270 (13) | 0.0376 (15) | 0.0236 (13) | 0.000 | −0.0081 (11) | 0.000 |
| C5 | 0.0196 (11) | 0.0413 (16) | 0.0297 (14) | 0.000 | −0.0047 (10) | 0.000 |
| C6 | 0.0234 (12) | 0.0373 (15) | 0.0197 (12) | 0.000 | 0.0029 (10) | 0.000 |
| N7 | 0.0293 (12) | 0.0544 (16) | 0.0235 (12) | 0.000 | 0.0018 (10) | 0.000 |
| O8 | 0.0236 (10) | 0.0659 (15) | 0.0344 (11) | 0.000 | −0.0027 (9) | 0.000 |
| O9 | 0.031 (2) | 0.03 (3) | 0.028 (2) | 0.002 (5) | 0.0129 (16) | 0.006 (6) |
| O9B | 0.040 (10) | 0.03 (4) | 0.027 (8) | −0.010 (18) | 0.001 (7) | −0.016 (19) |
| N10 | 0.0214 (10) | 0.0401 (13) | 0.0194 (10) | 0.000 | −0.0004 (8) | 0.000 |
| N11 | 0.0265 (11) | 0.0307 (12) | 0.0206 (10) | 0.000 | 0.0007 (9) | 0.000 |
| C12 | 0.0277 (13) | 0.0352 (15) | 0.0203 (13) | 0.000 | −0.0011 (10) | 0.000 |
| C13 | 0.0430 (16) | 0.0457 (18) | 0.0199 (12) | 0.000 | 0.0012 (12) | 0.000 |
| O14 | 0.0572 (14) | 0.0749 (17) | 0.0186 (10) | 0.000 | −0.0033 (10) | 0.000 |
| C15 | 0.0446 (18) | 0.079 (3) | 0.0315 (17) | 0.000 | 0.0111 (15) | 0.000 |
| Cl1—C12 | 1.736 (3) | N7—O9 | 1.230 (16) |
| C1—N10 | 1.388 (3) | N7—O9i | 1.230 (16) |
| C1—C6 | 1.402 (3) | N7—O9B | 1.42 (6) |
| C1—C2 | 1.403 (3) | N7—O9Bi | 1.42 (6) |
| C2—C3 | 1.390 (3) | O9—O9i | 0.553 (13) |
| C2—N7 | 1.460 (3) | O9B—O9Bi | 1.50 (17) |
| C3—C4 | 1.376 (4) | N10—N11 | 1.339 (3) |
| C3—H3 | 0.9300 | N10—H10 | 0.9315 |
| C4—C5 | 1.394 (4) | N11—C12 | 1.275 (3) |
| C4—H4 | 0.9300 | C12—C13 | 1.489 (4) |
| C5—C6 | 1.374 (3) | C13—O14 | 1.220 (3) |
| C5—H5 | 0.9300 | C13—C15 | 1.497 (4) |
| C6—H6 | 0.9300 | C15—H15A | 0.9600 |
| N7—O8 | 1.224 (3) | C15—H15B | 0.9600 |
| N10—C1—C6 | 120.0 (2) | O8—N7—O9Bi | 119 (3) |
| N10—C1—C2 | 122.8 (2) | O9—N7—O9Bi | 19 (3) |
| C6—C1—C2 | 117.2 (2) | O9i—N7—O9Bi | 45 (4) |
| C3—C2—C1 | 121.8 (2) | O9B—N7—O9Bi | 64 (7) |
| C3—C2—N7 | 116.3 (2) | O8—N7—C2 | 120.0 (2) |
| C1—C2—N7 | 121.8 (2) | O9—N7—C2 | 117.6 (8) |
| C4—C3—C2 | 119.7 (2) | O9i—N7—C2 | 117.6 (8) |
| C4—C3—H3 | 120.2 | O9B—N7—C2 | 111 (2) |
| C2—C3—H3 | 120.2 | O9Bi—N7—C2 | 111 (2) |
| C3—C4—C5 | 119.4 (2) | O9i—O9—N7 | 77.0 (3) |
| C3—C4—H4 | 120.3 | N7—O9B—O9Bi | 58 (4) |
| C5—C4—H4 | 120.3 | N11—N10—C1 | 118.9 (2) |
| C6—C5—C4 | 121.1 (2) | N11—N10—H10 | 117.3 |
| C6—C5—H5 | 119.5 | C1—N10—H10 | 123.8 |
| C4—C5—H5 | 119.5 | C12—N11—N10 | 120.0 (2) |
| C5—C6—C1 | 120.8 (2) | N11—C12—C13 | 119.9 (2) |
| C5—C6—H6 | 119.6 | N11—C12—Cl1 | 123.26 (19) |
| C1—C6—H6 | 119.6 | C13—C12—Cl1 | 116.89 (18) |
| O8—N7—O9 | 120.7 (8) | O14—C13—C12 | 119.7 (3) |
| O8—N7—O9i | 120.7 (8) | O14—C13—C15 | 123.7 (3) |
| O9—N7—O9i | 26.0 (6) | C12—C13—C15 | 116.6 (2) |
| O8—N7—O9B | 119 (3) | C13—C15—H15A | 109.2 |
| O9—N7—O9B | 45 (4) | C13—C15—H15B | 109.6 |
| O9i—N7—O9B | 19 (3) | H15A—C15—H15B | 109.5 |
| N10—C1—C2—C3 | 180.0 | C3—C2—N7—O9Bi | 35 (4) |
| C6—C1—C2—C3 | −0.0 | C1—C2—N7—O9Bi | −145 (4) |
| N10—C1—C2—N7 | −0.0 | O8—N7—O9—O9i | 97.9 (3) |
| C6—C1—C2—N7 | 180.0 | O9B—N7—O9—O9i | −4 (5) |
| C1—C2—C3—C4 | 0.0 | O9Bi—N7—O9—O9i | −172 (11) |
| N7—C2—C3—C4 | 180.0 | C2—N7—O9—O9i | −96.9 (3) |
| C2—C3—C4—C5 | −0.0 | O8—N7—O9B—O9Bi | −110 (2) |
| C3—C4—C5—C6 | 0.0 | O9—N7—O9B—O9Bi | −4 (6) |
| C4—C5—C6—C1 | −0.0 | O9i—N7—O9B—O9Bi | −9 (13) |
| N10—C1—C6—C5 | 180.0 | C2—N7—O9B—O9Bi | 104 (3) |
| C2—C1—C6—C5 | 0.0 | C6—C1—N10—N11 | −0.0 |
| C3—C2—N7—O8 | 180.0 | C2—C1—N10—N11 | 180.0 |
| C1—C2—N7—O8 | 0.0 | C1—N10—N11—C12 | 180.0 |
| C3—C2—N7—O9 | 14.7 (4) | N10—N11—C12—C13 | 180.0 |
| C1—C2—N7—O9 | −165.3 (4) | N10—N11—C12—Cl1 | −0.0 |
| C3—C2—N7—O9i | −14.7 (4) | N11—C12—C13—O14 | 180.0 |
| C1—C2—N7—O9i | 165.3 (4) | Cl1—C12—C13—O14 | 0.0 |
| C3—C2—N7—O9B | −35 (4) | N11—C12—C13—C15 | −0.0 |
| C1—C2—N7—O9B | 145 (4) | Cl1—C12—C13—C15 | 180.0 |
| H··· | ||||
| N10—H10···Cl1 | 0.93 | 2.44 | 2.912 (2) | 111 |
| N10—H10···O8 | 0.93 | 2.00 | 2.616 (3) | 122 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N10—H10⋯Cl1 | 0.93 | 2.44 | 2.912 (2) | 111 |
| N10—H10⋯O8 | 0.93 | 2.00 | 2.616 (3) | 122 |