Literature DB >> 23476446

4-(5-Chloro-thio-phen-2-yl)-1,2,3-selenadiazole.

Paramasivam Sugumar1, Subramaniyan Sankari, Paramasivam Manisankar, Mondikalipudur Nanjappa Gounder Ponnuswamy.   

Abstract

In the title compound, C6H3ClN2SSe, the selenadiazole and chloro-thio-phene rings are almost coplanar [dihedral angle = 5.24 (15)°]. In the crystal, C-H⋯N inter-actions link the mol-ecules into chains extending along the b-axis direction. C-H⋯π inter-actions also occur.

Entities:  

Year:  2012        PMID: 23476446      PMCID: PMC3588267          DOI: 10.1107/S1600536812049549

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of selenadiazole derivatives, see: El-Bahaie et al. (1990 ▶); El-Kashef et al. (1986 ▶); Padmavathi et al. (2002 ▶); Plano et al. (2010 ▶); Stadtman (1991 ▶); Velusamy et al. (2005 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C6H3ClN2SSe M = 249.57 Monoclinic, a = 6.0412 (3) Å b = 19.5870 (11) Å c = 7.2010 (4) Å β = 110.257 (3)° V = 799.38 (7) Å3 Z = 4 Mo Kα radiation μ = 5.22 mm−1 T = 293 K 0.22 × 0.20 × 0.18 mm

Data collection

Bruker SMART APEX CCD detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.330, T max = 0.391 7064 measured reflections 1978 independent reflections 1558 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.121 S = 1.01 1978 reflections 100 parameters H-atom parameters constrained Δρmax = 0.44 e Å−3 Δρmin = −0.52 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812049549/bt6854sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812049549/bt6854Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812049549/bt6854Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H3ClN2SSeF(000) = 480
Mr = 249.57Dx = 2.074 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1558 reflections
a = 6.0412 (3) Åθ = 2.1–28.3°
b = 19.5870 (11) ŵ = 5.22 mm1
c = 7.2010 (4) ÅT = 293 K
β = 110.257 (3)°Black, white crystalline
V = 799.38 (7) Å30.22 × 0.20 × 0.18 mm
Z = 4
Bruker SMART APEX CCD detector diffractometer1978 independent reflections
Radiation source: fine-focus sealed tube1558 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.044
ω scansθmax = 28.3°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −8→6
Tmin = 0.330, Tmax = 0.391k = −25→26
7064 measured reflectionsl = −9→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0716P)2 + 0.3075P] where P = (Fo2 + 2Fc2)/3
1978 reflections(Δ/σ)max = 0.001
100 parametersΔρmax = 0.44 e Å3
0 restraintsΔρmin = −0.52 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.3771 (6)0.60797 (19)0.2132 (5)0.0397 (7)
H10.52880.60780.20810.048*
C20.2578 (6)0.55180 (18)0.2343 (4)0.0333 (7)
C30.3344 (6)0.48114 (17)0.2494 (5)0.0328 (7)
C40.5358 (6)0.45391 (19)0.2353 (5)0.0412 (8)
H40.65320.47990.21340.049*
C50.5478 (6)0.38256 (19)0.2573 (5)0.0413 (8)
H50.67260.35620.25020.050*
C60.3579 (6)0.35688 (18)0.2896 (5)0.0376 (7)
Cl10.29911 (17)0.27326 (5)0.32523 (15)0.0529 (3)
N1−0.0347 (5)0.62617 (17)0.2239 (5)0.0482 (8)
N20.0334 (5)0.56419 (16)0.2406 (4)0.0428 (7)
S10.15880 (15)0.41890 (5)0.29606 (14)0.0408 (2)
Se10.19762 (7)0.684213 (19)0.19625 (6)0.04757 (18)
U11U22U33U12U13U23
C10.0304 (16)0.0409 (19)0.0469 (18)0.0004 (14)0.0120 (14)−0.0018 (15)
C20.0271 (15)0.0379 (18)0.0349 (15)−0.0008 (12)0.0107 (12)−0.0014 (13)
C30.0286 (15)0.0333 (16)0.0368 (15)−0.0044 (13)0.0120 (13)−0.0002 (13)
C40.0325 (17)0.0404 (19)0.056 (2)−0.0015 (14)0.0216 (15)0.0038 (16)
C50.0336 (17)0.042 (2)0.055 (2)0.0011 (14)0.0232 (16)−0.0024 (16)
C60.0353 (17)0.0351 (18)0.0427 (17)−0.0030 (14)0.0138 (14)−0.0027 (14)
Cl10.0501 (6)0.0375 (5)0.0727 (6)−0.0066 (4)0.0234 (5)0.0031 (4)
N10.0335 (15)0.0461 (19)0.068 (2)0.0029 (13)0.0221 (15)0.0005 (15)
N20.0308 (14)0.0443 (18)0.0577 (18)−0.0008 (13)0.0208 (13)−0.0007 (14)
S10.0289 (4)0.0409 (5)0.0559 (5)−0.0041 (3)0.0190 (4)0.0004 (4)
Se10.0375 (2)0.0371 (3)0.0659 (3)0.00047 (14)0.01514 (19)0.00089 (16)
C1—C21.352 (5)C4—H40.9300
C1—Se11.825 (4)C5—C61.345 (5)
C1—H10.9300C5—H50.9300
C2—N21.394 (4)C6—Cl11.714 (4)
C2—C31.451 (5)C6—S11.721 (4)
C3—C41.364 (5)N1—N21.274 (4)
C3—S11.724 (3)N1—Se11.870 (3)
C4—C51.406 (5)
C2—C1—Se1110.2 (3)C5—C4—H4123.4
C2—C1—H1124.9C6—C5—C4112.2 (3)
Se1—C1—H1124.9C6—C5—H5123.9
C1—C2—N2115.1 (3)C4—C5—H5123.9
C1—C2—C3128.0 (3)C5—C6—Cl1128.1 (3)
N2—C2—C3116.9 (3)C5—C6—S1112.7 (3)
C4—C3—C2129.5 (3)Cl1—C6—S1119.2 (2)
C4—C3—S1111.3 (3)N2—N1—Se1111.1 (2)
C2—C3—S1119.2 (2)N1—N2—C2116.7 (3)
C3—C4—C5113.1 (3)C3—S1—C690.63 (17)
C3—C4—H4123.4C1—Se1—N186.89 (15)
Se1—C1—C2—N2−0.7 (4)C4—C5—C6—S1−0.4 (4)
Se1—C1—C2—C3178.8 (3)Se1—N1—N2—C2−0.3 (4)
C1—C2—C3—C4−4.0 (6)C1—C2—N2—N10.7 (5)
N2—C2—C3—C4175.4 (3)C3—C2—N2—N1−178.8 (3)
C1—C2—C3—S1174.7 (3)C4—C3—S1—C6−1.4 (3)
N2—C2—C3—S1−5.8 (4)C2—C3—S1—C6179.7 (3)
C2—C3—C4—C5−179.7 (3)C5—C6—S1—C31.0 (3)
S1—C3—C4—C51.4 (4)Cl1—C6—S1—C3−179.5 (2)
C3—C4—C5—C6−0.7 (5)C2—C1—Se1—N10.4 (3)
C4—C5—C6—Cl1−179.8 (3)N2—N1—Se1—C1−0.1 (3)
D—H···AD—HH···AD···AD—H···A
C1—H1···N1i0.932.623.545 (5)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C1—H1⋯N1i 0.932.623.545 (5)171

Symmetry code: (i) .

  4 in total

1.  Synthesis and biological activity of some azoles and azines.

Authors:  S el-Bahaie; M G Assy; M M Hassanien
Journal:  Pharmazie       Date:  1990-10       Impact factor: 1.267

Review 2.  Biosynthesis and function of selenocysteine-containing enzymes.

Authors:  T C Stadtman
Journal:  J Biol Chem       Date:  1991-09-05       Impact factor: 5.157

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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