| Literature DB >> 23476443 |
A Thiruvalluvar1, S Rosepriya, K Jayamoorthy, J Jayabharathi, Sema Oztürk Yildirim, R J Butcher.
Abstract
In the title mol-ecule, C19H14N2O, the benzimidazole unit is close to being planar [maximum deviation = 0.0253 (11) Å] and forms dihedral angles of 68.98 (6) and 20.38 (7)° with the adjacent phenyl and benzene rings; the dihedral angle between the latter two planes is 64.30 (7)°. An intra-molecular O-H⋯N hydrogen bond generates an S(6) ring motif. In the crystal, mol-ecules are linked by C-H⋯N and C-H⋯O hydrogen bonds, and consolidated into a three-dimensional architecture by π-π stacking inter-actions, with a centroid-centroid distance of 3.8428 (12) Å.Entities:
Year: 2012 PMID: 23476443 PMCID: PMC3588362 DOI: 10.1107/S1600536812049859
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C19H14N2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Melting point: 387 K |
| Cu | |
| Cell parameters from 772 reflections | |
| θ = 4.8–75.4° | |
| α = 64.637 (16)° | µ = 0.66 mm−1 |
| β = 80.356 (10)° | |
| γ = 83.610 (9)° | Block, colourless |
| 0.76 × 0.46 × 0.32 mm |
| Agilent Xcalibur Ruby Gemini diffractometer | 2826 independent reflections |
| Radiation source: Enhance (Cu) X-ray Source | 2420 reflections with |
| Graphite monochromator | |
| Detector resolution: 10.5081 pixels mm-1 | θmax = 75.8°, θmin = 5.5° |
| ω scans | |
| Absorption correction: analytical [ | |
| 4335 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2826 reflections | (Δ/σ)max = 0.001 |
| 203 parameters | Δρmax = 0.32 e Å−3 |
| 0 restraints | Δρmin = −0.31 e Å−3 |
| Geometry. Bond distances, angles |
| Refinement. Refinement of |
| O26 | 0.61570 (15) | −0.11111 (15) | −0.08352 (15) | 0.0336 (4) | |
| N1 | 0.78361 (16) | 0.03924 (16) | 0.19436 (15) | 0.0249 (4) | |
| N3 | 0.70983 (17) | −0.15812 (16) | 0.15919 (16) | 0.0262 (4) | |
| C2 | 0.75812 (18) | −0.01378 (18) | 0.09515 (18) | 0.0238 (4) | |
| C4 | 0.6537 (2) | −0.3401 (2) | 0.4242 (2) | 0.0331 (5) | |
| C5 | 0.6508 (2) | −0.3488 (2) | 0.5613 (2) | 0.0384 (5) | |
| C6 | 0.6940 (3) | −0.2238 (2) | 0.5834 (2) | 0.0386 (6) | |
| C7 | 0.7442 (2) | −0.0876 (2) | 0.4680 (2) | 0.0340 (5) | |
| C8 | 0.7465 (2) | −0.07982 (18) | 0.33084 (19) | 0.0272 (5) | |
| C9 | 0.70108 (19) | −0.20226 (19) | 0.30605 (19) | 0.0269 (5) | |
| C11 | 0.8035 (2) | 0.19445 (18) | 0.17495 (18) | 0.0250 (5) | |
| C12 | 0.9424 (2) | 0.2276 (2) | 0.2142 (2) | 0.0301 (5) | |
| C13 | 0.9554 (2) | 0.3752 (2) | 0.2042 (2) | 0.0344 (5) | |
| C14 | 0.8320 (2) | 0.4876 (2) | 0.1542 (2) | 0.0331 (5) | |
| C15 | 0.6936 (2) | 0.4524 (2) | 0.1156 (2) | 0.0345 (5) | |
| C16 | 0.6775 (2) | 0.30484 (19) | 0.1263 (2) | 0.0306 (5) | |
| C21 | 0.77729 (18) | 0.07290 (18) | −0.06192 (18) | 0.0245 (5) | |
| C22 | 0.8703 (2) | 0.2056 (2) | −0.13605 (19) | 0.0286 (5) | |
| C23 | 0.8821 (2) | 0.2863 (2) | −0.2849 (2) | 0.0343 (5) | |
| C24 | 0.7977 (2) | 0.2376 (2) | −0.3632 (2) | 0.0359 (5) | |
| C25 | 0.7070 (2) | 0.1065 (2) | −0.2933 (2) | 0.0330 (5) | |
| C26 | 0.69972 (19) | 0.0214 (2) | −0.14465 (19) | 0.0272 (5) | |
| H4 | 0.62439 | −0.42523 | 0.41012 | 0.0397* | |
| H5 | 0.61885 | −0.44136 | 0.64270 | 0.0460* | |
| H6 | 0.68856 | −0.23287 | 0.67934 | 0.0463* | |
| H7 | 0.77567 | −0.00349 | 0.48246 | 0.0408* | |
| H12 | 1.02792 | 0.15069 | 0.24756 | 0.0361* | |
| H13 | 1.04993 | 0.39890 | 0.23189 | 0.0413* | |
| H14 | 0.84218 | 0.58863 | 0.14649 | 0.0397* | |
| H15 | 0.60863 | 0.52966 | 0.08129 | 0.0414* | |
| H16 | 0.58178 | 0.28037 | 0.10080 | 0.0367* | |
| H22 | 0.92633 | 0.24072 | −0.08287 | 0.0343* | |
| H23 | 0.94752 | 0.37448 | −0.33327 | 0.0411* | |
| H24 | 0.80249 | 0.29466 | −0.46494 | 0.0431* | |
| H25 | 0.64902 | 0.07421 | −0.34740 | 0.0395* | |
| H26 | 0.629 (4) | −0.158 (3) | 0.018 (3) | 0.057 (7)* |
| O26 | 0.0296 (6) | 0.0337 (7) | 0.0436 (8) | −0.0070 (5) | −0.0042 (5) | −0.0208 (6) |
| N1 | 0.0230 (7) | 0.0213 (7) | 0.0301 (7) | −0.0004 (5) | −0.0039 (5) | −0.0105 (6) |
| N3 | 0.0218 (6) | 0.0218 (7) | 0.0342 (8) | −0.0001 (5) | −0.0030 (5) | −0.0113 (6) |
| C2 | 0.0175 (7) | 0.0225 (7) | 0.0316 (8) | 0.0013 (5) | −0.0026 (6) | −0.0123 (6) |
| C4 | 0.0269 (8) | 0.0230 (8) | 0.0422 (10) | −0.0008 (6) | −0.0021 (7) | −0.0078 (7) |
| C5 | 0.0349 (9) | 0.0295 (9) | 0.0374 (10) | −0.0012 (7) | 0.0001 (8) | −0.0032 (8) |
| C6 | 0.0390 (10) | 0.0397 (10) | 0.0310 (9) | 0.0025 (8) | −0.0034 (8) | −0.0106 (8) |
| C7 | 0.0360 (9) | 0.0297 (9) | 0.0360 (9) | 0.0011 (7) | −0.0065 (7) | −0.0135 (8) |
| C8 | 0.0222 (7) | 0.0231 (8) | 0.0335 (9) | 0.0006 (6) | −0.0020 (6) | −0.0103 (7) |
| C9 | 0.0209 (7) | 0.0236 (8) | 0.0342 (9) | 0.0019 (6) | −0.0034 (6) | −0.0111 (7) |
| C11 | 0.0252 (8) | 0.0201 (8) | 0.0287 (8) | −0.0022 (6) | −0.0007 (6) | −0.0100 (6) |
| C12 | 0.0244 (8) | 0.0262 (8) | 0.0401 (10) | 0.0016 (6) | −0.0068 (7) | −0.0140 (7) |
| C13 | 0.0265 (8) | 0.0341 (10) | 0.0474 (10) | −0.0045 (7) | −0.0055 (7) | −0.0206 (8) |
| C14 | 0.0331 (9) | 0.0237 (8) | 0.0422 (10) | −0.0041 (7) | 0.0008 (7) | −0.0149 (7) |
| C15 | 0.0289 (9) | 0.0243 (8) | 0.0481 (11) | 0.0034 (6) | −0.0053 (7) | −0.0141 (8) |
| C16 | 0.0234 (8) | 0.0251 (8) | 0.0433 (10) | −0.0007 (6) | −0.0068 (7) | −0.0135 (7) |
| C21 | 0.0170 (7) | 0.0243 (8) | 0.0322 (9) | 0.0023 (6) | −0.0018 (6) | −0.0130 (7) |
| C22 | 0.0208 (7) | 0.0293 (9) | 0.0347 (9) | −0.0009 (6) | −0.0013 (6) | −0.0134 (7) |
| C23 | 0.0285 (9) | 0.0318 (9) | 0.0357 (10) | −0.0009 (7) | 0.0019 (7) | −0.0100 (8) |
| C24 | 0.0316 (9) | 0.0406 (10) | 0.0300 (9) | 0.0077 (7) | −0.0027 (7) | −0.0122 (8) |
| C25 | 0.0259 (8) | 0.0399 (10) | 0.0368 (10) | 0.0059 (7) | −0.0054 (7) | −0.0208 (8) |
| C26 | 0.0189 (7) | 0.0295 (8) | 0.0352 (9) | 0.0029 (6) | −0.0018 (6) | −0.0170 (7) |
| O26—C26 | 1.361 (2) | C21—C26 | 1.411 (3) |
| O26—H26 | 0.97 (3) | C21—C22 | 1.405 (3) |
| N1—C2 | 1.376 (2) | C22—C23 | 1.384 (3) |
| N1—C8 | 1.392 (2) | C23—C24 | 1.390 (3) |
| N1—C11 | 1.440 (2) | C24—C25 | 1.381 (3) |
| N3—C9 | 1.379 (2) | C25—C26 | 1.389 (3) |
| N3—C2 | 1.328 (2) | C4—H4 | 0.9500 |
| C2—C21 | 1.460 (2) | C5—H5 | 0.9500 |
| C4—C9 | 1.401 (3) | C6—H6 | 0.9500 |
| C4—C5 | 1.377 (3) | C7—H7 | 0.9500 |
| C5—C6 | 1.405 (3) | C12—H12 | 0.9500 |
| C6—C7 | 1.385 (3) | C13—H13 | 0.9500 |
| C7—C8 | 1.382 (3) | C14—H14 | 0.9500 |
| C8—C9 | 1.404 (3) | C15—H15 | 0.9500 |
| C11—C12 | 1.381 (2) | C16—H16 | 0.9500 |
| C11—C16 | 1.384 (3) | C22—H22 | 0.9500 |
| C12—C13 | 1.391 (3) | C23—H23 | 0.9500 |
| C13—C14 | 1.381 (3) | C24—H24 | 0.9500 |
| C14—C15 | 1.382 (2) | C25—H25 | 0.9500 |
| C15—C16 | 1.392 (3) | ||
| C26—O26—H26 | 106.6 (19) | C23—C24—C25 | 120.11 (17) |
| C2—N1—C8 | 106.88 (15) | C24—C25—C26 | 120.62 (17) |
| C8—N1—C11 | 121.93 (15) | O26—C26—C25 | 117.70 (16) |
| C2—N1—C11 | 129.56 (15) | C21—C26—C25 | 120.26 (17) |
| C2—N3—C9 | 106.46 (15) | O26—C26—C21 | 122.04 (16) |
| N1—C2—C21 | 126.44 (16) | C5—C4—H4 | 121.00 |
| N3—C2—C21 | 121.90 (16) | C9—C4—H4 | 121.00 |
| N1—C2—N3 | 111.66 (15) | C4—C5—H5 | 119.00 |
| C5—C4—C9 | 118.13 (18) | C6—C5—H5 | 119.00 |
| C4—C5—C6 | 121.46 (18) | C5—C6—H6 | 119.00 |
| C5—C6—C7 | 121.27 (18) | C7—C6—H6 | 119.00 |
| C6—C7—C8 | 116.87 (18) | C6—C7—H7 | 122.00 |
| N1—C8—C7 | 131.52 (18) | C8—C7—H7 | 122.00 |
| N1—C8—C9 | 105.57 (15) | C11—C12—H12 | 120.00 |
| C7—C8—C9 | 122.88 (17) | C13—C12—H12 | 120.00 |
| N3—C9—C8 | 109.43 (16) | C12—C13—H13 | 120.00 |
| C4—C9—C8 | 119.38 (17) | C14—C13—H13 | 120.00 |
| N3—C9—C4 | 131.18 (18) | C13—C14—H14 | 120.00 |
| N1—C11—C16 | 119.08 (15) | C15—C14—H14 | 120.00 |
| C12—C11—C16 | 121.35 (18) | C14—C15—H15 | 120.00 |
| N1—C11—C12 | 119.43 (16) | C16—C15—H15 | 120.00 |
| C11—C12—C13 | 119.07 (17) | C11—C16—H16 | 121.00 |
| C12—C13—C14 | 120.50 (17) | C15—C16—H16 | 121.00 |
| C13—C14—C15 | 119.69 (19) | C21—C22—H22 | 119.00 |
| C14—C15—C16 | 120.66 (17) | C23—C22—H22 | 119.00 |
| C11—C16—C15 | 118.73 (16) | C22—C23—H23 | 120.00 |
| C2—C21—C26 | 118.85 (16) | C24—C23—H23 | 120.00 |
| C22—C21—C26 | 117.79 (16) | C23—C24—H24 | 120.00 |
| C2—C21—C22 | 123.35 (16) | C25—C24—H24 | 120.00 |
| C21—C22—C23 | 121.43 (17) | C24—C25—H25 | 120.00 |
| C22—C23—C24 | 119.65 (18) | C26—C25—H25 | 120.00 |
| C8—N1—C2—N3 | −0.83 (19) | C6—C7—C8—N1 | 177.26 (19) |
| C8—N1—C2—C21 | 178.31 (15) | C6—C7—C8—C9 | −0.1 (3) |
| C11—N1—C2—N3 | −166.19 (16) | N1—C8—C9—N3 | −0.26 (19) |
| C11—N1—C2—C21 | 13.0 (3) | N1—C8—C9—C4 | −179.06 (15) |
| C2—N1—C8—C7 | −177.06 (18) | C7—C8—C9—N3 | 177.69 (16) |
| C2—N1—C8—C9 | 0.64 (18) | C7—C8—C9—C4 | −1.1 (3) |
| C11—N1—C8—C7 | −10.3 (3) | N1—C11—C12—C13 | −175.74 (16) |
| C11—N1—C8—C9 | 167.36 (15) | C16—C11—C12—C13 | −0.1 (3) |
| C2—N1—C11—C12 | −124.86 (19) | N1—C11—C16—C15 | 176.42 (16) |
| C2—N1—C11—C16 | 59.4 (2) | C12—C11—C16—C15 | 0.8 (3) |
| C8—N1—C11—C12 | 71.7 (2) | C11—C12—C13—C14 | −0.7 (3) |
| C8—N1—C11—C16 | −104.04 (19) | C12—C13—C14—C15 | 0.8 (3) |
| C9—N3—C2—N1 | 0.66 (19) | C13—C14—C15—C16 | −0.2 (3) |
| C9—N3—C2—C21 | −178.53 (15) | C14—C15—C16—C11 | −0.6 (3) |
| C2—N3—C9—C4 | 178.37 (18) | C2—C21—C22—C23 | −178.51 (17) |
| C2—N3—C9—C8 | −0.23 (19) | C26—C21—C22—C23 | 1.8 (3) |
| N1—C2—C21—C22 | 19.6 (3) | C2—C21—C26—O26 | −3.8 (3) |
| N1—C2—C21—C26 | −160.78 (16) | C2—C21—C26—C25 | 176.02 (16) |
| N3—C2—C21—C22 | −161.38 (17) | C22—C21—C26—O26 | 175.86 (16) |
| N3—C2—C21—C26 | 18.3 (2) | C22—C21—C26—C25 | −4.3 (3) |
| C9—C4—C5—C6 | −0.1 (3) | C21—C22—C23—C24 | 1.4 (3) |
| C5—C4—C9—N3 | −177.34 (17) | C22—C23—C24—C25 | −2.1 (3) |
| C5—C4—C9—C8 | 1.2 (3) | C23—C24—C25—C26 | −0.4 (3) |
| C4—C5—C6—C7 | −1.2 (3) | C24—C25—C26—O26 | −176.50 (17) |
| C5—C6—C7—C8 | 1.2 (3) | C24—C25—C26—C21 | 3.7 (3) |
| H··· | ||||
| O26—H26···N3 | 0.97 (3) | 1.70 (3) | 2.583 (2) | 150 (3) |
| C14—H14···N3i | 0.95 | 2.60 | 3.456 (3) | 151 |
| C16—H16···O26ii | 0.95 | 2.49 | 3.388 (2) | 157 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O26—H26⋯N3 | 0.97 (3) | 1.70 (3) | 2.583 (2) | 150 (3) |
| C14—H14⋯N3i | 0.95 | 2.60 | 3.456 (3) | 151 |
| C16—H16⋯O26ii | 0.95 | 2.49 | 3.388 (2) | 157 |
Symmetry codes: (i) ; (ii) .