Literature DB >> 23476404

5-(Prop-2-yn-1-yl)-5H-dibenzo[b,f]azepine: ortho-rhom-bic polymorph.

M M M Abdoh1, S Madan Kumar, K S Vinay Kumar, B C Manjunath, M P Sadashiva, N K Lokanath.   

Abstract

In the title ortho-rhom-bic polymorph (space group Iba2), C17H13N, the dihedral angle between the benzene rings is 55.99 (10)° and the azepine ring adopts a boat conformation. In the crystal, mol-ecules are linked by C-H⋯π contacts. The previously-reported polymorph [Yousuf et al. (2012 ▶). Acta Cryst. E68, o1101] crystallizes in the monoclinic system (space group P21/c) with two mol-ecules in the asymmetric unit.

Entities:  

Year:  2012        PMID: 23476404      PMCID: PMC3588308          DOI: 10.1107/S1600536812048908

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the previously-reported monoclinic polymorph, see: Yousuf et al. (2012 ▶). For biochemical background, see: Sadashiva et al. (2005 ▶).

Experimental

Crystal data

C17H13N M = 231.28 Orthorhombic, a = 16.2444 (6) Å b = 21.1700 (6) Å c = 7.2399 (2) Å V = 2489.76 (13) Å3 Z = 8 Mo Kα radiation μ = 0.07 mm−1 T = 103 K 0.35 × 0.30 × 0.25 mm

Data collection

Oxford Diffraction Xcalibur Eos diffractometer 10081 measured reflections 1199 independent reflections 1132 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.067 S = 1.09 1199 reflections 164 parameters 1 restraint H-atom parameters constrained Δρmax = 0.08 e Å−3 Δρmin = −0.10 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812048908/hb6998sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812048908/hb6998Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812048908/hb6998Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H13NF(000) = 976
Mr = 231.28Dx = 1.234 Mg m3
Orthorhombic, Iba2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: I 2 -2cCell parameters from 1199 reflections
a = 16.2444 (6) Åθ = 3.2–25.0°
b = 21.1700 (6) ŵ = 0.07 mm1
c = 7.2399 (2) ÅT = 103 K
V = 2489.76 (13) Å3Block, yellow
Z = 80.35 × 0.30 × 0.25 mm
Oxford Diffraction Xcalibur Eos diffractometer1132 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.027
Graphite monochromatorθmax = 25.0°, θmin = 3.2°
Detector resolution: 16.0839 pixels mm-1h = −19→19
ω scansk = −25→25
10081 measured reflectionsl = −8→8
1199 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.026H-atom parameters constrained
wR(F2) = 0.067w = 1/[σ2(Fo2) + (0.0354P)2 + 0.3725P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max < 0.001
1199 reflectionsΔρmax = 0.08 e Å3
164 parametersΔρmin = −0.10 e Å3
1 restraintExtinction correction: SHELXL97 (Sheldrick, 2008), FC*=KFC[1+0.001XFC2Λ3/SIN(2Θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0046 (6)
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.23053 (8)0.36797 (6)0.6618 (2)0.0409 (4)
C20.31311 (10)0.36894 (7)0.5957 (3)0.0414 (5)
C30.34432 (10)0.42627 (8)0.5292 (3)0.0492 (6)
C40.29519 (12)0.48379 (8)0.5170 (3)0.0560 (6)
C50.21579 (11)0.48775 (7)0.4806 (3)0.0538 (6)
C60.15967 (10)0.43569 (8)0.4423 (3)0.0450 (5)
C70.16937 (9)0.37583 (7)0.5219 (2)0.0399 (5)
C80.11790 (10)0.32691 (8)0.4686 (3)0.0483 (6)
C90.05556 (11)0.33719 (9)0.3419 (3)0.0592 (7)
C100.04355 (11)0.39633 (10)0.2688 (3)0.0635 (7)
C110.09515 (11)0.44467 (9)0.3192 (3)0.0571 (6)
C120.36307 (11)0.31589 (9)0.5992 (3)0.0532 (6)
C130.44347 (12)0.31917 (11)0.5374 (3)0.0705 (8)
C140.47460 (12)0.37508 (13)0.4711 (4)0.0791 (9)
C150.42559 (12)0.42769 (11)0.4679 (4)0.0691 (8)
C160.21109 (11)0.32276 (8)0.8082 (3)0.0491 (6)
C170.26199 (11)0.33371 (8)0.9703 (3)0.0474 (6)
C180.30303 (14)0.34250 (9)1.1020 (3)0.0616 (7)
H40.323400.522500.537400.0670*
H50.192700.529000.479200.0650*
H80.125500.286000.519500.0580*
H90.021000.303200.305400.0710*
H10−0.000100.403700.184100.0760*
H110.086500.485500.268300.0690*
H120.341900.277000.644300.0640*
H130.477300.282600.540700.0850*
H140.529700.377200.427900.0950*
H150.447600.466300.422600.0830*
H16A0.152300.326800.842400.0590*
H16B0.220300.279300.762400.0590*
H180.336100.349601.208200.0740*
U11U22U33U12U13U23
N10.0432 (7)0.0429 (7)0.0367 (8)−0.0037 (6)0.0005 (6)0.0061 (6)
C20.0424 (8)0.0505 (9)0.0314 (8)−0.0034 (8)−0.0036 (8)−0.0045 (7)
C30.0494 (9)0.0594 (10)0.0389 (10)−0.0153 (8)−0.0019 (8)−0.0043 (8)
C40.0762 (12)0.0439 (10)0.0479 (11)−0.0187 (8)0.0020 (10)−0.0015 (8)
C50.0747 (11)0.0393 (9)0.0474 (11)0.0003 (8)0.0066 (11)0.0039 (8)
C60.0506 (9)0.0464 (8)0.0380 (9)0.0061 (7)0.0079 (8)0.0023 (8)
C70.0385 (8)0.0449 (8)0.0362 (9)0.0031 (7)0.0050 (7)−0.0001 (7)
C80.0464 (9)0.0486 (9)0.0498 (11)−0.0009 (8)−0.0006 (9)−0.0001 (8)
C90.0498 (10)0.0693 (12)0.0584 (13)−0.0044 (9)−0.0072 (10)−0.0051 (10)
C100.0506 (10)0.0866 (14)0.0533 (13)0.0091 (11)−0.0072 (10)0.0044 (12)
C110.0574 (11)0.0628 (11)0.0511 (11)0.0143 (9)0.0018 (10)0.0122 (9)
C120.0539 (10)0.0610 (11)0.0448 (11)0.0056 (9)−0.0074 (9)−0.0068 (9)
C130.0560 (11)0.1000 (17)0.0554 (13)0.0212 (12)−0.0066 (11)−0.0157 (13)
C140.0453 (11)0.131 (2)0.0610 (14)−0.0082 (12)0.0035 (11)−0.0112 (15)
C150.0540 (11)0.0919 (15)0.0615 (13)−0.0257 (11)0.0031 (11)−0.0036 (13)
C160.0545 (10)0.0483 (9)0.0446 (11)−0.0065 (8)−0.0006 (9)0.0095 (8)
C170.0632 (11)0.0407 (8)0.0384 (10)−0.0004 (8)0.0064 (10)0.0056 (8)
C180.0885 (15)0.0558 (11)0.0404 (11)−0.0061 (11)−0.0077 (11)0.0014 (9)
N1—C21.424 (2)C14—C151.369 (3)
N1—C71.429 (2)C16—C171.454 (3)
N1—C161.463 (2)C17—C181.178 (3)
C2—C31.401 (2)C4—H40.9500
C2—C121.386 (2)C5—H50.9500
C3—C41.459 (2)C8—H80.9500
C3—C151.393 (3)C9—H90.9500
C4—C51.319 (3)C10—H100.9500
C5—C61.457 (2)C11—H110.9500
C6—C71.401 (2)C12—H120.9500
C6—C111.389 (3)C13—H130.9500
C7—C81.386 (2)C14—H140.9500
C8—C91.384 (3)C15—H150.9500
C9—C101.373 (3)C16—H16A0.9900
C10—C111.372 (3)C16—H16B0.9900
C12—C131.382 (3)C18—H180.9500
C13—C141.374 (4)
C2—N1—C7114.53 (14)C3—C4—H4117.00
C2—N1—C16117.15 (13)C5—C4—H4117.00
C7—N1—C16116.10 (13)C4—C5—H5117.00
N1—C2—C3117.96 (14)C6—C5—H5116.00
N1—C2—C12122.26 (15)C7—C8—H8120.00
C3—C2—C12119.77 (16)C9—C8—H8120.00
C2—C3—C4123.10 (16)C8—C9—H9120.00
C2—C3—C15118.11 (17)C10—C9—H9120.00
C4—C3—C15118.76 (17)C9—C10—H10120.00
C3—C4—C5126.88 (16)C11—C10—H10120.00
C4—C5—C6127.00 (15)C6—C11—H11119.00
C5—C6—C7122.38 (16)C10—C11—H11119.00
C5—C6—C11119.39 (16)C2—C12—H12120.00
C7—C6—C11118.21 (15)C13—C12—H12120.00
N1—C7—C6118.38 (14)C12—C13—H13120.00
N1—C7—C8122.01 (14)C14—C13—H13120.00
C6—C7—C8119.58 (15)C13—C14—H14120.00
C7—C8—C9120.57 (16)C15—C14—H14120.00
C8—C9—C10120.19 (17)C3—C15—H15119.00
C9—C10—C11119.39 (18)C14—C15—H15119.00
C6—C11—C10121.97 (18)N1—C16—H16A109.00
C2—C12—C13120.44 (18)N1—C16—H16B109.00
C12—C13—C14120.3 (2)C17—C16—H16A109.00
C13—C14—C15119.5 (2)C17—C16—H16B109.00
C3—C15—C14121.9 (2)H16A—C16—H16B108.00
N1—C16—C17110.96 (14)C17—C18—H18180.00
C16—C17—C18179.8 (2)
C7—N1—C2—C369.0 (2)C4—C3—C15—C14−178.4 (2)
C7—N1—C2—C12−112.4 (2)C3—C4—C5—C6−0.8 (4)
C16—N1—C2—C3−149.95 (18)C4—C5—C6—C732.0 (3)
C16—N1—C2—C1228.6 (3)C4—C5—C6—C11−146.4 (2)
C2—N1—C7—C6−72.36 (18)C5—C6—C7—N17.6 (3)
C2—N1—C7—C8110.12 (17)C5—C6—C7—C8−174.84 (18)
C16—N1—C7—C6146.21 (16)C11—C6—C7—N1−174.02 (16)
C16—N1—C7—C8−31.3 (2)C11—C6—C7—C83.6 (3)
C2—N1—C16—C1758.9 (2)C5—C6—C11—C10175.77 (19)
C7—N1—C16—C17−160.75 (14)C7—C6—C11—C10−2.7 (3)
N1—C2—C3—C4−2.9 (3)N1—C7—C8—C9175.51 (16)
N1—C2—C3—C15178.7 (2)C6—C7—C8—C9−2.0 (3)
C12—C2—C3—C4178.5 (2)C7—C8—C9—C10−0.6 (3)
C12—C2—C3—C150.1 (3)C8—C9—C10—C111.6 (3)
N1—C2—C12—C13−178.59 (19)C9—C10—C11—C60.1 (3)
C3—C2—C12—C130.0 (3)C2—C12—C13—C14−0.3 (3)
C2—C3—C4—C5−33.6 (4)C12—C13—C14—C150.5 (4)
C15—C3—C4—C5144.8 (2)C13—C14—C15—C3−0.4 (4)
C2—C3—C15—C140.1 (4)
D—H···AD—HH···AD···AD—H···A
C10—H10···Cg2i0.952.753.659 (2)160
C18—H18···Cg1ii0.952.583.512 (2)167
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C2/C3/C12–C15 and C6-C11 rings, respectively.

D—H⋯A D—HH⋯A DA D—H⋯A
C10—H10⋯Cg2i 0.952.753.659 (2)160
C18—H18⋯Cg1ii 0.952.583.512 (2)167

Symmetry codes: (i) ; (ii) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
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Authors:  M P Sadashiva; H Mallesha; K Karunakara Murthy; K S Rangappa
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3.  5-(Prop-2-yn-yl)-5H-dibenzo[b,f]azepine.

Authors:  S Yousuf; M Khan; S Fazal; M Butt; F Z Basha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-17
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