Literature DB >> 23476373

1,5-Bis(piperidin-1-yl)-9,10-anthraquin-one.

Paweł Niedziałkowski1, Elżbieta Wnuk, Anna Wcisło, Damian Trzybiński.   

Abstract

In the centrosymmetric title compound, C24H26N2O2, the piperidine ring adopts a chair conformation and is inclined at a dihedral angle of 37.5 (1)°to the anthracene ring system. In the crystal, adjacent mol-ecules are linked through C-H⋯π and π-π [centroid-centroid distances = 3.806 (1) Å] inter-actions, forming a layer parallel to the bc plane.

Entities:  

Year:  2012        PMID: 23476373      PMCID: PMC3588357          DOI: 10.1107/S1600536812050313

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to quinone compounds, see: Alves et al. (2004 ▶); El-Najjar et al. (2011 ▶); Czupryniak et al. (2012 ▶); Krohn (2008 ▶); Wannalerse et al. (2008 ▶). For related structures, see: Niedziałkowski et al. (2010 ▶, 2011 ▶); Wnuk et al. (2012 ▶); Yatsenko et al. (2000 ▶).

Experimental

Crystal data

C24H26N2O2 M = 374.47 Monoclinic, a = 10.9115 (4) Å b = 7.0127 (2) Å c = 12.5984 (5) Å β = 97.819 (4)° V = 955.05 (6) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 295 K 0.45 × 0.22 × 0.05 mm

Data collection

Oxford Diffraction Gemini R Ultra Ruby CCD diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2008 ▶) T min = 0.909, T max = 1.000 12625 measured reflections 1699 independent reflections 1274 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.102 S = 1.04 1699 reflections 127 parameters H-atom parameters constrained Δρmax = 0.13 e Å−3 Δρmin = −0.14 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2008 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812050313/xu5662sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812050313/xu5662Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812050313/xu5662Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H26N2O2F(000) = 400
Mr = 374.47Dx = 1.302 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5096 reflections
a = 10.9115 (4) Åθ = 3.3–29.2°
b = 7.0127 (2) ŵ = 0.08 mm1
c = 12.5984 (5) ÅT = 295 K
β = 97.819 (4)°Plate, dark-red
V = 955.05 (6) Å30.45 × 0.22 × 0.05 mm
Z = 2
Oxford Diffraction Gemini R Ultra Ruby CCD diffractometer1699 independent reflections
Radiation source: Enhanced (Mo) X-ray Source1274 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.042
Detector resolution: 10.4002 pixels mm-1θmax = 25.1°, θmin = 3.3°
ω scansh = −13→13
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2008)k = −8→8
Tmin = 0.909, Tmax = 1.000l = −15→15
12625 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.102H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0491P)2 + 0.0697P] where P = (Fo2 + 2Fc2)/3
1699 reflections(Δ/σ)max < 0.001
127 parametersΔρmax = 0.13 e Å3
0 restraintsΔρmin = −0.14 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
C10.09986 (14)0.19940 (19)0.37606 (11)0.0393 (4)
C20.01598 (16)0.0605 (2)0.33222 (14)0.0513 (4)
H20.0428−0.03380.28890.062*
C3−0.10447 (16)0.0595 (2)0.35124 (15)0.0559 (5)
H3−0.1586−0.03200.31840.067*
C4−0.14652 (15)0.1917 (2)0.41814 (13)0.0472 (4)
H4−0.22730.18520.43380.057*
C5−0.06790 (13)0.33481 (18)0.46218 (12)0.0383 (4)
C60.05433 (13)0.34603 (18)0.43854 (11)0.0368 (4)
C70.12218 (14)0.5249 (2)0.46817 (13)0.0430 (4)
O80.21900 (12)0.56569 (16)0.43513 (12)0.0720 (4)
N90.22226 (11)0.19390 (17)0.35623 (10)0.0436 (3)
C100.32009 (14)0.1930 (2)0.44808 (12)0.0499 (4)
H10A0.33080.06450.47630.060*
H10B0.29610.27420.50410.060*
C110.44077 (15)0.2628 (3)0.41651 (14)0.0588 (5)
H11A0.50470.25700.47800.071*
H11B0.43200.39460.39340.071*
C120.47827 (16)0.1425 (3)0.32700 (15)0.0609 (5)
H12A0.49740.01410.35270.073*
H12B0.55180.19580.30300.073*
C130.37392 (16)0.1369 (3)0.23460 (14)0.0578 (5)
H13A0.36280.26300.20320.069*
H13B0.39580.05070.18000.069*
C140.25403 (16)0.0721 (2)0.27005 (14)0.0537 (5)
H14A0.18840.07720.20990.064*
H14B0.2621−0.05880.29480.064*
U11U22U33U12U13U23
C10.0474 (9)0.0385 (8)0.0304 (8)−0.0024 (6)−0.0002 (7)0.0035 (6)
C20.0595 (11)0.0423 (9)0.0505 (11)−0.0062 (8)0.0019 (9)−0.0084 (7)
C30.0566 (11)0.0439 (9)0.0651 (12)−0.0167 (8)0.0002 (9)−0.0133 (8)
C40.0447 (9)0.0413 (8)0.0546 (10)−0.0110 (7)0.0028 (8)−0.0001 (7)
C50.0438 (9)0.0341 (7)0.0354 (8)−0.0056 (6)−0.0009 (7)0.0058 (6)
C60.0425 (9)0.0349 (7)0.0313 (8)−0.0050 (6)−0.0012 (7)0.0029 (6)
C70.0424 (9)0.0419 (8)0.0444 (10)−0.0089 (7)0.0049 (8)0.0008 (7)
O80.0637 (8)0.0614 (8)0.0985 (11)−0.0251 (6)0.0386 (8)−0.0237 (7)
N90.0458 (8)0.0498 (7)0.0340 (7)0.0008 (6)0.0010 (6)−0.0046 (6)
C100.0501 (10)0.0603 (10)0.0375 (10)−0.0003 (7)−0.0009 (8)0.0037 (8)
C110.0489 (11)0.0720 (11)0.0539 (11)−0.0041 (8)0.0018 (9)0.0006 (9)
C120.0520 (11)0.0673 (11)0.0640 (13)0.0094 (8)0.0101 (9)0.0045 (9)
C130.0668 (12)0.0613 (10)0.0478 (11)0.0120 (9)0.0162 (9)−0.0037 (9)
C140.0614 (11)0.0528 (9)0.0457 (11)0.0040 (8)0.0032 (9)−0.0116 (8)
C1—N91.3923 (19)N9—C101.4637 (19)
C1—C21.398 (2)C10—C111.508 (2)
C1—C61.425 (2)C10—H10A0.9700
C2—C31.368 (2)C10—H10B0.9700
C2—H20.9300C11—C121.509 (2)
C3—C41.373 (2)C11—H11A0.9700
C3—H30.9300C11—H11B0.9700
C4—C51.386 (2)C12—C131.514 (2)
C4—H40.9300C12—H12A0.9700
C5—C61.4078 (19)C12—H12B0.9700
C5—C7i1.493 (2)C13—C141.509 (2)
C6—C71.479 (2)C13—H13A0.9700
C7—O81.2209 (18)C13—H13B0.9700
C7—C5i1.493 (2)C14—H14A0.9700
N9—C141.4595 (19)C14—H14B0.9700
N9—C1—C2120.15 (13)N9—C10—H10B109.4
N9—C1—C6122.30 (13)C11—C10—H10B109.4
C2—C1—C6117.53 (14)H10A—C10—H10B108.0
C3—C2—C1121.86 (15)C10—C11—C12110.53 (15)
C3—C2—H2119.1C10—C11—H11A109.5
C1—C2—H2119.1C12—C11—H11A109.5
C2—C3—C4120.87 (14)C10—C11—H11B109.5
C2—C3—H3119.6C12—C11—H11B109.5
C4—C3—H3119.6H11A—C11—H11B108.1
C3—C4—C5119.62 (15)C11—C12—C13109.70 (14)
C3—C4—H4120.2C11—C12—H12A109.7
C5—C4—H4120.2C13—C12—H12A109.7
C4—C5—C6120.55 (14)C11—C12—H12B109.7
C4—C5—C7i116.03 (14)C13—C12—H12B109.7
C6—C5—C7i123.40 (12)H12A—C12—H12B108.2
C5—C6—C1119.22 (12)C14—C13—C12111.83 (15)
C5—C6—C7116.76 (13)C14—C13—H13A109.3
C1—C6—C7123.47 (13)C12—C13—H13A109.3
O8—C7—C6122.64 (14)C14—C13—H13B109.3
O8—C7—C5i118.49 (13)C12—C13—H13B109.3
C6—C7—C5i118.83 (13)H13A—C13—H13B107.9
C1—N9—C14118.71 (12)N9—C14—C13110.33 (13)
C1—N9—C10118.19 (12)N9—C14—H14A109.6
C14—N9—C10111.35 (12)C13—C14—H14A109.6
N9—C10—C11111.04 (13)N9—C14—H14B109.6
N9—C10—H10A109.4C13—C14—H14B109.6
C11—C10—H10A109.4H14A—C14—H14B108.1
N9—C1—C2—C3178.97 (15)C1—C6—C7—O85.0 (2)
C6—C1—C2—C3−2.4 (2)C5—C6—C7—C5i11.1 (2)
C1—C2—C3—C4−2.6 (3)C1—C6—C7—C5i−177.48 (13)
C2—C3—C4—C53.7 (3)C2—C1—N9—C1414.6 (2)
C3—C4—C5—C60.2 (2)C6—C1—N9—C14−163.92 (13)
C3—C4—C5—C7i178.57 (15)C2—C1—N9—C10−125.26 (15)
C4—C5—C6—C1−5.3 (2)C6—C1—N9—C1056.21 (18)
C7i—C5—C6—C1176.55 (13)C1—N9—C10—C11−157.87 (14)
C4—C5—C6—C7166.56 (14)C14—N9—C10—C1159.50 (17)
C7i—C5—C6—C7−11.6 (2)N9—C10—C11—C12−57.34 (18)
N9—C1—C6—C5−175.20 (13)C10—C11—C12—C1354.17 (19)
C2—C1—C6—C56.2 (2)C11—C12—C13—C14−54.10 (19)
N9—C1—C6—C713.6 (2)C1—N9—C14—C13159.33 (13)
C2—C1—C6—C7−164.99 (14)C10—N9—C14—C13−58.25 (17)
C5—C6—C7—O8−166.46 (16)C12—C13—C14—N956.03 (18)
D—H···AD—HH···AD···AD—H···A
C2—H2···Cg2ii0.932.983.850 (2)156
IJCgI···CgJDihedral angleCgI_PerpCgJ_PerpCgI_OffsetCgJ_Offset
22ii3.806 (1)03.702 (1)3.702 (1)0.884 (1)0.884 (1)
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 is the centroid of the C1–C6 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C2—H2⋯Cg2i 0.932.983.850 (2)156

Symmetry code: (i) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Membrane-related effects underlying the biological activity of the anthraquinones emodin and barbaloin.

Authors:  Daiane S Alves; Laura Pérez-Fons; Amparo Estepa; Vicente Micol
Journal:  Biochem Pharmacol       Date:  2004-08-01       Impact factor: 5.858

3.  1,8-Bis(tos-yloxy)-9,10-anthraquinone.

Authors:  Paweł Niedziałkowski; Damian Trzybiński; Artur Sikorski; Tadeusz Ossowski
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-04

4.  1-Dimethyl-amino-9,10-anthraquinone.

Authors:  Paweł Niedziałkowski; Joanna Narloch; Damian Trzybiński; Tadeusz Ossowski
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-26

5.  1-(Piperidin-1-yl)-9,10-anthraquinone.

Authors:  Elżbieta Wnuk; Paweł Niedziałkowski; Damian Trzybiński; Tadeusz Ossowski
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-08

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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