Literature DB >> 23476369

4-Bromo-2-[(E)-(2-fluoro-5-nitro-phenyl)iminometh-yl]phenol.

Shaaban K Mohamed1, Mehmet Akkurt, Peter N Horton, Antar A Abdelhamid, Adel A Marzouk.   

Abstract

The mol-ecular conformation of the title compound, C13H8BrFN2O3, is essentially planar, with maximum deviations of 0.076 (1) and -0.080 (2) Å for the O atoms of the NO2 group. The mol-ecular conformation is stabilized by an intra-molecular O-H⋯N hydrogen bond, forming an S(6) ring motif. In the crystal, pairs of mol-ecules are linked via two pairs of C-H⋯O hydrogen bonds, forming inversion dimers that enclose R(2)2(7)R(2)2(10)R(2)2(7) ring motifs.

Entities:  

Year:  2012        PMID: 23476369      PMCID: PMC3588360          DOI: 10.1107/S1600536812050696

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and biological activity of azomethines, see: Przybylski et al. (2009 ▶); Kalaivani et al. (2012 ▶); Blair et al. (2000 ▶). For the synthesis of fluorinated azomethines, see: Mohamed et al. (2012 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C13H8BrFN2O3 M = 339.11 Monoclinic, a = 4.5082 (9) Å b = 19.815 (4) Å c = 13.853 (3) Å β = 95.484 (5)° V = 1231.8 (4) Å3 Z = 4 Mo Kα radiation μ = 3.36 mm−1 T = 100 K 0.24 × 0.04 × 0.03 mm

Data collection

Rigaku AFC12 (Right) diffractometer Absorption correction: multi-scan (CrystalClear-SM Expert; Rigaku, 2012 ▶) T min = 0.500, T max = 0.906 8107 measured reflections 2811 independent reflections 2633 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.059 S = 1.05 2811 reflections 182 parameters H-atom parameters constrained Δρmax = 0.52 e Å−3 Δρmin = −0.54 e Å−3 Data collection: CrystalClear-SM Expert (Rigaku, 2012 ▶); cell refinement: CrystalClear-SM Expert; data reduction: CrystalClear-SM Expert; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812050696/xu5665sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812050696/xu5665Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812050696/xu5665Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H8BrFN2O3F(000) = 672
Mr = 339.11Dx = 1.829 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71075 Å
Hall symbol: -P 2ynCell parameters from 4566 reflections
a = 4.5082 (9) Åθ = 2.5–31.2°
b = 19.815 (4) ŵ = 3.36 mm1
c = 13.853 (3) ÅT = 100 K
β = 95.484 (5)°Rod, yellow
V = 1231.8 (4) Å30.24 × 0.04 × 0.03 mm
Z = 4
Rigaku AFC12 (Right) diffractometer2811 independent reflections
Radiation source: Rotating Anode2633 reflections with I > 2σ(I)
Detector resolution: 28.5714 pixels mm-1Rint = 0.023
profile data from ω–scansθmax = 27.5°, θmin = 3.0°
Absorption correction: multi-scan (CrystalClear-SM Expert; Rigaku, 2012)h = −5→5
Tmin = 0.500, Tmax = 0.906k = −25→24
8107 measured reflectionsl = −17→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.025Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.059H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0255P)2 + 1.1447P] where P = (Fo2 + 2Fc2)/3
2811 reflections(Δ/σ)max = 0.001
182 parametersΔρmax = 0.52 e Å3
0 restraintsΔρmin = −0.54 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br1−0.15532 (4)0.22619 (1)0.43736 (1)0.0188 (1)
F10.7510 (2)0.50903 (6)0.05672 (7)0.0202 (3)
O10.2171 (3)0.37891 (7)0.09274 (9)0.0171 (4)
O21.5039 (3)0.63282 (8)0.41030 (11)0.0290 (4)
O31.2227 (5)0.56614 (11)0.48212 (12)0.0614 (8)
N10.5847 (3)0.44689 (7)0.21201 (11)0.0140 (4)
N21.3057 (4)0.59101 (9)0.40914 (12)0.0227 (5)
C10.2662 (4)0.36222 (8)0.26646 (12)0.0123 (5)
C20.1398 (4)0.34652 (9)0.17204 (12)0.0135 (5)
C3−0.0742 (4)0.29535 (9)0.15895 (13)0.0157 (5)
C4−0.1635 (4)0.26099 (9)0.23746 (13)0.0159 (5)
C5−0.0389 (4)0.27669 (9)0.33084 (12)0.0140 (5)
C60.1728 (4)0.32683 (9)0.34603 (12)0.0145 (5)
C70.4936 (4)0.41399 (9)0.28338 (13)0.0138 (5)
C80.8050 (4)0.49730 (9)0.22592 (13)0.0136 (5)
C90.8877 (4)0.52873 (9)0.14215 (12)0.0150 (5)
C101.0992 (4)0.57931 (9)0.14290 (13)0.0165 (5)
C111.2365 (4)0.60049 (9)0.23159 (13)0.0157 (5)
C121.1566 (4)0.56969 (9)0.31484 (13)0.0156 (5)
C130.9451 (4)0.51880 (9)0.31435 (13)0.0154 (5)
H10.348300.407900.109300.0260*
H3−0.158300.284300.095400.0190*
H4−0.310100.226600.228100.0190*
H60.255000.337300.410000.0170*
H70.575300.423500.347700.0170*
H101.149200.599100.084100.0200*
H111.381900.635300.235100.0190*
H130.896900.499000.373300.0180*
U11U22U33U12U13U23
Br10.0189 (1)0.0213 (1)0.0161 (1)−0.0045 (1)0.0003 (1)0.0053 (1)
F10.0209 (6)0.0273 (6)0.0115 (5)−0.0064 (5)−0.0028 (4)0.0011 (4)
O10.0208 (7)0.0184 (6)0.0119 (6)−0.0042 (5)0.0007 (5)0.0008 (5)
O20.0326 (8)0.0292 (8)0.0243 (7)−0.0159 (7)−0.0022 (6)−0.0043 (6)
O30.0880 (16)0.0804 (15)0.0135 (8)−0.0628 (13)−0.0074 (9)0.0082 (8)
N10.0128 (7)0.0141 (7)0.0150 (7)0.0001 (6)0.0013 (6)−0.0005 (5)
N20.0290 (9)0.0228 (8)0.0156 (8)−0.0085 (7)−0.0011 (7)−0.0008 (6)
C10.0110 (8)0.0124 (8)0.0136 (8)0.0021 (6)0.0011 (6)−0.0003 (6)
C20.0137 (8)0.0135 (8)0.0133 (8)0.0026 (6)0.0015 (6)0.0004 (6)
C30.0156 (9)0.0171 (8)0.0140 (8)0.0000 (7)−0.0011 (6)−0.0047 (7)
C40.0145 (8)0.0144 (8)0.0186 (9)−0.0005 (7)0.0001 (7)−0.0018 (7)
C50.0144 (8)0.0148 (8)0.0127 (8)0.0009 (7)0.0015 (6)0.0021 (6)
C60.0147 (8)0.0160 (8)0.0125 (8)0.0014 (7)0.0000 (6)0.0002 (6)
C70.0123 (8)0.0151 (8)0.0137 (8)0.0012 (7)−0.0005 (6)−0.0014 (6)
C80.0129 (8)0.0129 (8)0.0151 (8)0.0007 (6)0.0016 (7)−0.0003 (6)
C90.0139 (8)0.0179 (8)0.0125 (8)0.0022 (7)−0.0023 (6)−0.0014 (6)
C100.0164 (9)0.0166 (8)0.0167 (9)0.0011 (7)0.0022 (7)0.0036 (7)
C110.0155 (8)0.0126 (8)0.0191 (9)−0.0009 (7)0.0017 (7)0.0007 (7)
C120.0163 (9)0.0155 (8)0.0145 (8)−0.0004 (7)−0.0010 (7)−0.0021 (6)
C130.0160 (9)0.0159 (8)0.0143 (8)−0.0009 (7)0.0012 (7)0.0007 (6)
Br1—C51.8980 (18)C5—C61.380 (3)
F1—C91.339 (2)C8—C131.390 (3)
O1—C21.347 (2)C8—C91.399 (2)
O2—N21.218 (2)C9—C101.383 (3)
O3—N21.215 (3)C10—C111.387 (3)
O1—H10.8400C11—C121.383 (3)
N1—C71.284 (2)C12—C131.387 (3)
N1—C81.409 (2)C3—H30.9500
N2—C121.473 (2)C4—H40.9500
C1—C61.405 (2)C6—H60.9500
C1—C71.453 (2)C7—H70.9500
C1—C21.411 (2)C10—H100.9500
C2—C31.399 (3)C11—H110.9500
C3—C41.376 (3)C13—H130.9500
C4—C51.395 (2)
C2—O1—H1109.00F1—C9—C10118.47 (15)
C7—N1—C8121.86 (16)C8—C9—C10123.70 (16)
O2—N2—C12118.63 (16)C9—C10—C11118.36 (16)
O3—N2—C12118.09 (18)C10—C11—C12118.40 (17)
O2—N2—O3123.29 (18)N2—C12—C11118.69 (16)
C2—C1—C7121.43 (15)C11—C12—C13123.40 (17)
C6—C1—C7119.05 (15)N2—C12—C13117.91 (16)
C2—C1—C6119.52 (16)C8—C13—C12118.76 (16)
O1—C2—C3117.94 (15)C2—C3—H3120.00
C1—C2—C3119.50 (16)C4—C3—H3120.00
O1—C2—C1122.56 (16)C3—C4—H4120.00
C2—C3—C4120.43 (16)C5—C4—H4120.00
C3—C4—C5120.02 (17)C1—C6—H6120.00
Br1—C5—C4119.11 (13)C5—C6—H6120.00
Br1—C5—C6119.98 (13)N1—C7—H7120.00
C4—C5—C6120.88 (16)C1—C7—H7120.00
C1—C6—C5119.65 (15)C9—C10—H10121.00
N1—C7—C1120.45 (16)C11—C10—H10121.00
N1—C8—C9116.27 (16)C10—C11—H11121.00
N1—C8—C13126.35 (16)C12—C11—H11121.00
C9—C8—C13117.38 (16)C8—C13—H13121.00
F1—C9—C8117.83 (16)C12—C13—H13121.00
C8—N1—C7—C1−179.92 (16)C3—C4—C5—C60.4 (3)
C7—N1—C8—C9179.13 (17)C3—C4—C5—Br1−177.66 (14)
C7—N1—C8—C13−1.3 (3)Br1—C5—C6—C1177.55 (13)
O3—N2—C12—C13−4.7 (3)C4—C5—C6—C1−0.5 (3)
O2—N2—C12—C11−3.3 (3)N1—C8—C9—C10179.72 (16)
O2—N2—C12—C13175.80 (17)C13—C8—C9—F1−179.08 (16)
O3—N2—C12—C11176.20 (19)C13—C8—C9—C100.1 (3)
C7—C1—C2—C3178.71 (17)N1—C8—C9—F10.5 (2)
C7—C1—C6—C5−178.80 (17)N1—C8—C13—C12−179.49 (17)
C2—C1—C7—N10.1 (3)C9—C8—C13—C120.1 (3)
C2—C1—C6—C50.7 (3)F1—C9—C10—C11178.83 (16)
C6—C1—C2—C3−0.8 (3)C8—C9—C10—C11−0.4 (3)
C7—C1—C2—O1−1.2 (3)C9—C10—C11—C120.4 (3)
C6—C1—C7—N1179.58 (16)C10—C11—C12—N2178.83 (16)
C6—C1—C2—O1179.35 (16)C10—C11—C12—C13−0.3 (3)
O1—C2—C3—C4−179.43 (16)N2—C12—C13—C8−179.08 (16)
C1—C2—C3—C40.7 (3)C11—C12—C13—C80.0 (3)
C2—C3—C4—C5−0.5 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.841.862.601 (2)146
C7—H7···O3i0.952.453.399 (3)173
C13—H13···O3i0.952.483.430 (3)173
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N10.841.862.601 (2)146
C7—H7⋯O3i 0.952.453.399 (3)173
C13—H13⋯O3i 0.952.483.430 (3)173

Symmetry code: (i) .

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