Literature DB >> 23476357

Diaqua-bis-[4-(1H-imidazol-2-yl)pyridine-κN]bis-(nitrato-κO)cadmium.

Chuan-Yue Zhang1, Tao Wang, Chuan-Ming Jin.   

Abstract

In the title compound, [Cd(NO3)2(C8H7N3)2(H2O)2], the Cd(II) cation is situated on an inversion center and is coordinated by the O atoms of two nitrate anions, by the N atoms of two 4-(imidazol-2-yl)pyridine ligands and by two water O atoms in a slightly distorted N2O4 octa-hedral geometry. The dihedral angle between the imidazole and pyridine rings is 1.6 (2)°. In the crystal, mol-ecules are linked by N-H⋯O, O-H⋯N and O-H⋯O hydrogen bonds, forming a three-dimensional network.

Entities:  

Year:  2012        PMID: 23476357      PMCID: PMC3588280          DOI: 10.1107/S1600536812050908

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to compounds with metal-organic framework (MOF) structures, see: Batten & Robson (1998 ▶); Burrows (2011 ▶); Jin et al. (2010 ▶); Tanabe & Cohen (2011 ▶). For the use of N,N′-type ligands in MOFs, see: Custelcean (2010 ▶); Pschirer et al. (2002 ▶). For the structural analysis of an imidazole closely related to the ligand, see: Voss et al. (2008 ▶).

Experimental

Crystal data

[Cd(NO3)2(C8H7N3)2(H2O)2] M = 562.78 Monoclinic, a = 7.2508 (7) Å b = 12.1372 (12) Å c = 12.3509 (12) Å β = 102.278 (2)° V = 1062.07 (18) Å3 Z = 2 Mo Kα radiation μ = 1.09 mm−1 T = 298 K 0.16 × 0.12 × 0.10 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.845, T max = 0.899 6543 measured reflections 2462 independent reflections 2272 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.084 S = 1.10 2462 reflections 157 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.73 e Å−3 Δρmin = −0.47 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2004 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812050908/im2415sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812050908/im2415Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cd(NO3)2(C8H7N3)2(H2O)2]F(000) = 564
Mr = 562.78Dx = 1.760 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4257 reflections
a = 7.2508 (7) Åθ = 2.4–28.3°
b = 12.1372 (12) ŵ = 1.09 mm1
c = 12.3509 (12) ÅT = 298 K
β = 102.278 (2)°Block, colorless
V = 1062.07 (18) Å30.16 × 0.12 × 0.10 mm
Z = 2
Bruker APEXII CCD area-detector diffractometer2462 independent reflections
Radiation source: fine-focus sealed tube2272 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.046
phi and ω scansθmax = 28.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −7→9
Tmin = 0.845, Tmax = 0.899k = −15→15
6543 measured reflectionsl = −14→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.084H atoms treated by a mixture of independent and constrained refinement
S = 1.10w = 1/[σ2(Fo2) + (0.0252P)2 + 1.0694P] where P = (Fo2 + 2Fc2)/3
2462 reflections(Δ/σ)max = 0.001
157 parametersΔρmax = 0.73 e Å3
3 restraintsΔρmin = −0.47 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cd11.00000.50000.50000.03811 (11)
C10.8396 (5)0.6142 (2)0.2671 (2)0.0466 (7)
H10.84650.67540.31310.056*
C20.7823 (5)0.6301 (2)0.1550 (2)0.0456 (7)
H20.74980.70020.12690.055*
C30.7732 (4)0.5408 (2)0.0842 (2)0.0341 (5)
C40.8205 (5)0.4390 (2)0.1325 (2)0.0499 (8)
H40.81460.37640.08850.060*
C50.8761 (5)0.4304 (3)0.2458 (2)0.0497 (7)
H50.90860.36120.27620.060*
C60.7176 (4)0.5554 (2)−0.0359 (2)0.0337 (5)
C70.6323 (5)0.6241 (3)−0.1984 (2)0.0502 (7)
H70.59500.6748−0.25520.060*
C80.6534 (5)0.5154 (3)−0.2132 (3)0.0506 (8)
H80.63500.4779−0.28030.061*
N10.8860 (4)0.51635 (18)0.3142 (2)0.0396 (5)
N20.6733 (4)0.6497 (2)−0.08794 (19)0.0426 (5)
N30.7075 (4)0.4715 (2)−0.1096 (2)0.0427 (6)
H30.73090.4032−0.09390.051*
N40.7084 (3)0.6785 (2)0.5340 (2)0.0411 (5)
O10.8766 (3)0.6853 (3)0.5384 (2)0.0747 (8)
O20.6297 (5)0.5914 (2)0.5037 (3)0.0965 (11)
O30.6156 (3)0.75586 (18)0.5590 (2)0.0562 (6)
O41.2220 (3)0.63059 (19)0.4800 (2)0.0573 (6)
H4B1.200 (5)0.6945 (15)0.461 (4)0.086*
H4A1.334 (2)0.617 (3)0.490 (4)0.086*
U11U22U33U12U13U23
Cd10.05052 (19)0.03477 (16)0.02528 (16)−0.00965 (11)−0.00034 (11)0.00115 (10)
C10.071 (2)0.0372 (14)0.0297 (13)−0.0023 (14)0.0073 (13)−0.0033 (11)
C20.069 (2)0.0356 (14)0.0303 (14)0.0046 (14)0.0079 (13)0.0017 (11)
C30.0388 (13)0.0346 (12)0.0279 (12)−0.0030 (11)0.0050 (10)0.0008 (10)
C40.081 (2)0.0318 (14)0.0306 (14)−0.0012 (14)−0.0011 (14)−0.0041 (11)
C50.074 (2)0.0355 (14)0.0333 (15)−0.0032 (14)−0.0040 (13)0.0036 (12)
C60.0389 (13)0.0332 (13)0.0285 (12)0.0001 (10)0.0059 (10)−0.0012 (10)
C70.065 (2)0.0547 (18)0.0284 (14)0.0112 (15)0.0049 (13)0.0079 (12)
C80.069 (2)0.0556 (19)0.0252 (14)0.0020 (15)0.0045 (13)−0.0020 (12)
N10.0523 (14)0.0368 (12)0.0267 (12)−0.0080 (10)0.0014 (10)0.0007 (9)
N20.0578 (15)0.0393 (12)0.0303 (11)0.0077 (11)0.0083 (10)0.0027 (9)
N30.0615 (16)0.0356 (11)0.0293 (12)0.0016 (11)0.0055 (11)−0.0029 (9)
N40.0460 (13)0.0387 (13)0.0408 (13)0.0056 (10)0.0142 (10)0.0112 (10)
O10.0446 (13)0.111 (2)0.0681 (17)0.0082 (14)0.0112 (12)0.0077 (16)
O20.114 (3)0.0367 (14)0.151 (3)−0.0131 (15)0.055 (2)−0.0218 (17)
O30.0654 (14)0.0389 (11)0.0700 (16)0.0107 (11)0.0271 (12)0.0021 (10)
O40.0418 (11)0.0386 (12)0.0886 (18)−0.0045 (9)0.0075 (12)0.0101 (12)
Cd1—N12.276 (2)C5—N11.335 (4)
Cd1—N1i2.276 (2)C5—H50.9300
Cd1—O42.310 (2)C6—N21.319 (3)
Cd1—O4i2.310 (2)C6—N31.357 (3)
Cd1—O12.503 (3)C7—C81.345 (4)
Cd1—O1i2.503 (3)C7—N21.368 (4)
C1—N11.333 (4)C7—H70.9300
C1—C21.371 (4)C8—N31.364 (4)
C1—H10.9300C8—H80.9300
C2—C31.386 (4)N3—H30.8600
C2—H20.9300N4—O11.211 (3)
C3—C41.384 (4)N4—O21.222 (4)
C3—C61.463 (3)N4—O31.232 (3)
C4—C51.374 (4)O4—H4B0.816 (10)
C4—H40.9300O4—H4A0.814 (10)
N1—Cd1—N1i180.00 (4)N1—C5—C4123.4 (3)
N1—Cd1—O486.81 (9)N1—C5—H5118.3
N1i—Cd1—O493.19 (9)C4—C5—H5118.3
N1—Cd1—O4i93.19 (9)N2—C6—N3110.6 (2)
N1i—Cd1—O4i86.81 (9)N2—C6—C3125.8 (2)
O4—Cd1—O4i180.0N3—C6—C3123.6 (2)
N1—Cd1—O192.58 (9)C8—C7—N2110.6 (3)
N1i—Cd1—O187.42 (9)C8—C7—H7124.7
O4—Cd1—O171.89 (9)N2—C7—H7124.7
O4i—Cd1—O1108.11 (9)C7—C8—N3105.9 (3)
N1—Cd1—O1i87.42 (9)C7—C8—H8127.1
N1i—Cd1—O1i92.58 (9)N3—C8—H8127.1
O4—Cd1—O1i108.11 (9)C1—N1—C5116.4 (3)
O4i—Cd1—O1i71.89 (9)C1—N1—Cd1121.42 (18)
O1—Cd1—O1i180.00 (7)C5—N1—Cd1121.97 (19)
N1—C1—C2124.1 (3)C6—N2—C7105.5 (2)
N1—C1—H1118.0C6—N3—C8107.4 (3)
C2—C1—H1118.0C6—N3—H3126.3
C1—C2—C3119.4 (3)C8—N3—H3126.3
C1—C2—H2120.3O1—N4—O2118.2 (3)
C3—C2—H2120.3O1—N4—O3122.4 (3)
C4—C3—C2116.9 (2)O2—N4—O3119.4 (3)
C4—C3—C6122.3 (3)N4—O1—Cd1109.1 (2)
C2—C3—C6120.8 (2)Cd1—O4—H4B126 (3)
C5—C4—C3119.9 (3)Cd1—O4—H4A123 (3)
C5—C4—H4120.0H4B—O4—H4A111 (2)
C3—C4—H4120.0
N1—C1—C2—C3−0.9 (5)O1i—Cd1—N1—C1−161.4 (3)
C1—C2—C3—C41.1 (5)N1i—Cd1—N1—C5−114 (15)
C1—C2—C3—C6−178.3 (3)O4—Cd1—N1—C5121.5 (3)
C2—C3—C4—C5−1.0 (5)O4i—Cd1—N1—C5−58.5 (3)
C6—C3—C4—C5178.4 (3)O1—Cd1—N1—C5−166.8 (3)
C3—C4—C5—N10.7 (6)O1i—Cd1—N1—C513.2 (3)
C4—C3—C6—N2−179.0 (3)N3—C6—N2—C70.5 (3)
C2—C3—C6—N20.4 (4)C3—C6—N2—C7179.7 (3)
C4—C3—C6—N30.1 (4)C8—C7—N2—C6−0.6 (4)
C2—C3—C6—N3179.4 (3)N2—C6—N3—C8−0.2 (4)
N2—C7—C8—N30.5 (4)C3—C6—N3—C8−179.4 (3)
C2—C1—N1—C50.6 (5)C7—C8—N3—C6−0.2 (4)
C2—C1—N1—Cd1175.5 (3)O2—N4—O1—Cd1−6.3 (4)
C4—C5—N1—C1−0.5 (5)O3—N4—O1—Cd1173.7 (2)
C4—C5—N1—Cd1−175.3 (3)N1—Cd1—O1—N477.8 (2)
N1i—Cd1—N1—C172 (15)N1i—Cd1—O1—N4−102.2 (2)
O4—Cd1—N1—C1−53.1 (3)O4—Cd1—O1—N4163.6 (2)
O4i—Cd1—N1—C1126.9 (3)O4i—Cd1—O1—N4−16.4 (2)
O1—Cd1—N1—C118.6 (3)O1i—Cd1—O1—N429 (12)
D—H···AD—HH···AD···AD—H···A
N3—H3···O3ii0.862.102.923 (3)160
O4—H4B···N2iii0.82 (1)1.98 (1)2.796 (3)174 (4)
O4—H4A···O2iv0.81 (1)2.14 (1)2.946 (4)174 (4)
O4—H4A···O3iv0.81 (1)2.65 (3)3.197 (3)126 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3⋯O3i 0.862.102.923 (3)160
O4—H4B⋯N2ii 0.82 (1)1.98 (1)2.796 (3)174 (4)
O4—H4A⋯O2iii 0.81 (1)2.14 (1)2.946 (4)174 (4)
O4—H4A⋯O3iii 0.81 (1)2.65 (3)3.197 (3)126 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  Anions in crystal engineering.

Authors:  Radu Custelcean
Journal:  Chem Soc Rev       Date:  2010-08-23       Impact factor: 54.564

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 3.  Postsynthetic modification of metal-organic frameworks--a progress report.

Authors:  Kristine K Tanabe; Seth M Cohen
Journal:  Chem Soc Rev       Date:  2010-11-23       Impact factor: 54.564

  3 in total

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