Literature DB >> 23476319

Aqua-(4-cyano-pyridine-κN (4))(5,10,15,20-tetra-phenyl-porphyrinato-κ(4) N)magnesium.

Khaireddine Ezzayani1, Mohamed Salah Belkhiria, Shabir Najmudin, Cecilia Bonifácio, Habib Nasri.   

Abstract

In the title complex, [Mg(C44H28N4)(C6H4N2)(H2O)], the Mg(2+) cation is octa-hedrally coordinated and lies on an inversion center with the axially located 4-cyano-pyridine and aqua ligands exhibiting 50% substitutional disorder. The cyano-bound 4-cyano-pyridine mol-ecule also is disordered across the inversion centre. The four N atoms of the pyrrole rings of the dianionic 5,10,15,20-tetra-phenyl-porphyrin ligand occupy the equatorial sites of the octa-hedron [Mg-N = 2.0552 (10) and 2.0678 (11) Å] and the axial Mg-(N,O) bond length is 2.3798 (12) Å. The crystal packing is stabilized by weak inter-molecular C-H⋯π inter-actions.

Entities:  

Year:  2012        PMID: 23476319      PMCID: PMC3588276          DOI: 10.1107/S1600536812049434

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to magnesium porphyrin species and their applications, see: Ghosh et al. (2010 ▶). For the synthesis of the [Mg(TPP)(H2O)] (TPP is tetraphenylporphyrin) complex, see: Timkovich & Tulinsky (1969 ▶). For related structures, see: Choon et al. (1986 ▶); Imaz et al. (2005 ▶); Hibbs et al. (2003 ▶); Etkin et al. (1998 ▶); Yang et al. (2008 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

[Mg(C44H28N4)(C6H4N2)(H2O)] M = 757.13 Triclinic, a = 8.9080 (3) Å b = 10.7550 (4) Å c = 11.9530 (6) Å α = 63.446 (1)° β = 89.364 (2)° γ = 73.408 (1)° V = 972.60 (7) Å3 Z = 1 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.48 × 0.40 × 0.24 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.955, T max = 0.978 11765 measured reflections 3792 independent reflections 3307 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.103 S = 1.07 3792 reflections 268 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.54 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶) and ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812049434/zs2246sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812049434/zs2246Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Mg(C44H28N4)(C6H4N2)(H2O)]Z = 1
Mr = 757.13F(000) = 394.0
Triclinic, P1Dx = 1.293 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.9080 (3) ÅCell parameters from 6453 reflections
b = 10.7550 (4) Åθ = 2.7–27.9°
c = 11.9530 (6) ŵ = 0.09 mm1
α = 63.446 (1)°T = 296 K
β = 89.364 (2)°Block, purple
γ = 73.408 (1)°0.48 × 0.40 × 0.24 mm
V = 972.60 (7) Å3
Bruker APEXII CCD diffractometer3792 independent reflections
Radiation source: fine-focus sealed tube3307 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.023
φ and ω scansθmax = 26.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −8→10
Tmin = 0.955, Tmax = 0.978k = −13→13
11765 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.103H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0446P)2 + 0.2998P] where P = (Fo2 + 2Fc2)/3
3792 reflections(Δ/σ)max = 0.001
268 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.54 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Mg0.00000.50000.50000.0558 (3)
N10.12116 (13)0.31528 (11)0.66326 (11)0.0307 (3)
N2−0.15077 (13)0.39306 (11)0.48540 (10)0.0289 (2)
C10.25095 (15)0.29941 (14)0.73443 (12)0.0291 (3)
C20.30581 (17)0.15246 (14)0.83701 (13)0.0327 (3)
H20.39200.11390.89890.039*
C30.20800 (17)0.08127 (14)0.82614 (13)0.0320 (3)
H30.2143−0.01540.87930.038*
C40.09273 (15)0.18314 (13)0.71703 (12)0.0286 (3)
C5−0.02834 (15)0.15157 (13)0.66983 (12)0.0279 (3)
C6−0.14087 (15)0.25020 (13)0.56257 (12)0.0284 (3)
C7−0.26537 (16)0.21639 (15)0.51694 (14)0.0336 (3)
H7−0.28490.12690.55260.040*
C8−0.34809 (16)0.33799 (15)0.41330 (14)0.0342 (3)
H8−0.43550.34850.36420.041*
C9−0.27529 (15)0.44944 (14)0.39274 (13)0.0292 (3)
C100.32299 (15)0.40857 (14)0.70979 (13)0.0294 (3)
C110.45965 (16)0.37258 (14)0.80258 (13)0.0312 (3)
C120.61223 (18)0.34910 (18)0.77378 (16)0.0457 (4)
H120.63190.35270.69600.055*
C130.7370 (2)0.32017 (19)0.85992 (19)0.0557 (5)
H130.83940.30470.83930.067*
C140.7102 (2)0.31430 (17)0.97470 (17)0.0544 (5)
H140.79380.29531.03210.065*
C150.5591 (3)0.3367 (2)1.00457 (16)0.0604 (5)
H150.54020.33221.08280.073*
C160.4342 (2)0.36610 (19)0.91893 (15)0.0484 (4)
H160.33210.38160.94010.058*
C17−0.03842 (15)−0.00131 (14)0.73710 (12)0.0286 (3)
C18−0.1134 (2)−0.04637 (17)0.84312 (16)0.0474 (4)
H18−0.15290.01670.87770.057*
C19−0.1303 (2)−0.18509 (18)0.89874 (17)0.0546 (5)
H19−0.1808−0.21430.97030.065*
C20−0.07258 (19)−0.27960 (16)0.84860 (15)0.0423 (4)
H20−0.0866−0.37140.88460.051*
C210.00540 (19)−0.23746 (15)0.74544 (14)0.0402 (3)
H210.0466−0.30150.71220.048*
C220.02310 (18)−0.09931 (15)0.69032 (13)0.0355 (3)
H220.0773−0.07210.62070.043*
N30.17377 (15)0.40333 (15)0.38534 (13)0.0541 (3)0.50
C230.2697 (3)0.2742 (3)0.4230 (3)0.0370 (6)0.50
C240.38443 (16)0.13429 (15)0.45960 (14)0.0406 (3)0.50
C25A0.43163 (19)0.04190 (18)0.58443 (17)0.0465 (4)0.50
H25A0.38590.06920.64370.056*0.50
C26A0.45348 (19)0.09187 (17)0.37545 (16)0.0436 (4)0.50
H26A0.42300.15380.28940.052*0.50
O10.17377 (15)0.40333 (15)0.38534 (13)0.0541 (3)0.50
C25B0.43163 (19)0.04190 (18)0.58443 (17)0.0465 (4)0.50
H25B0.38590.06920.64370.056*0.50
C26B0.45348 (19)0.09187 (17)0.37545 (16)0.0436 (4)0.50
H26B0.42300.15380.28940.052*0.50
N40.38443 (16)0.13429 (15)0.45960 (14)0.0406 (3)0.50
U11U22U33U12U13U23
Mg0.0624 (5)0.0257 (4)0.0585 (5)−0.0250 (3)−0.0308 (4)0.0055 (3)
N10.0329 (6)0.0214 (5)0.0355 (6)−0.0107 (5)−0.0004 (5)−0.0098 (5)
N20.0306 (6)0.0205 (5)0.0339 (6)−0.0090 (4)0.0014 (5)−0.0103 (5)
C10.0312 (7)0.0237 (6)0.0315 (7)−0.0080 (5)0.0023 (5)−0.0125 (5)
C20.0379 (7)0.0262 (7)0.0306 (7)−0.0092 (6)−0.0013 (6)−0.0106 (6)
C30.0408 (8)0.0219 (6)0.0301 (7)−0.0105 (6)0.0026 (6)−0.0090 (5)
C40.0326 (7)0.0216 (6)0.0318 (7)−0.0093 (5)0.0063 (5)−0.0121 (5)
C50.0312 (7)0.0224 (6)0.0317 (7)−0.0103 (5)0.0074 (5)−0.0127 (5)
C60.0299 (7)0.0228 (6)0.0352 (7)−0.0112 (5)0.0076 (5)−0.0141 (6)
C70.0333 (7)0.0256 (7)0.0430 (8)−0.0143 (6)0.0042 (6)−0.0137 (6)
C80.0314 (7)0.0289 (7)0.0430 (8)−0.0134 (6)0.0013 (6)−0.0147 (6)
C90.0285 (7)0.0250 (6)0.0357 (7)−0.0094 (5)0.0038 (5)−0.0149 (6)
C100.0294 (7)0.0251 (6)0.0336 (7)−0.0084 (5)0.0027 (5)−0.0137 (6)
C110.0364 (7)0.0207 (6)0.0353 (7)−0.0104 (5)−0.0002 (6)−0.0111 (6)
C120.0351 (8)0.0512 (9)0.0553 (10)−0.0066 (7)0.0015 (7)−0.0325 (8)
C130.0335 (8)0.0517 (10)0.0795 (13)−0.0031 (7)−0.0095 (8)−0.0341 (10)
C140.0607 (11)0.0328 (8)0.0578 (11)−0.0146 (8)−0.0252 (9)−0.0103 (8)
C150.0873 (15)0.0642 (12)0.0346 (9)−0.0411 (11)−0.0020 (9)−0.0162 (8)
C160.0549 (10)0.0589 (10)0.0407 (9)−0.0323 (8)0.0104 (7)−0.0224 (8)
C170.0307 (7)0.0229 (6)0.0311 (7)−0.0108 (5)0.0024 (5)−0.0101 (5)
C180.0646 (11)0.0353 (8)0.0525 (10)−0.0237 (8)0.0282 (8)−0.0246 (8)
C190.0731 (12)0.0412 (9)0.0552 (10)−0.0326 (9)0.0328 (9)−0.0190 (8)
C200.0516 (9)0.0259 (7)0.0459 (9)−0.0199 (7)0.0004 (7)−0.0090 (6)
C210.0512 (9)0.0269 (7)0.0447 (8)−0.0114 (6)0.0011 (7)−0.0188 (7)
C220.0448 (8)0.0293 (7)0.0337 (7)−0.0133 (6)0.0081 (6)−0.0148 (6)
N30.0445 (7)0.0621 (9)0.0702 (9)−0.0178 (6)0.0123 (6)−0.0423 (8)
C230.0330 (14)0.0408 (16)0.0484 (17)−0.0179 (13)0.0103 (12)−0.0266 (14)
C240.0332 (7)0.0348 (7)0.0597 (9)−0.0124 (6)0.0090 (6)−0.0258 (7)
C25A0.0426 (9)0.0494 (9)0.0586 (10)−0.0149 (7)0.0168 (8)−0.0342 (9)
C26A0.0428 (9)0.0408 (8)0.0469 (9)−0.0141 (7)0.0085 (7)−0.0196 (7)
O10.0445 (7)0.0621 (9)0.0702 (9)−0.0178 (6)0.0123 (6)−0.0423 (8)
C25B0.0426 (9)0.0494 (9)0.0586 (10)−0.0149 (7)0.0168 (8)−0.0342 (9)
C26B0.0428 (9)0.0408 (8)0.0469 (9)−0.0141 (7)0.0085 (7)−0.0196 (7)
N40.0332 (7)0.0348 (7)0.0597 (9)−0.0124 (6)0.0090 (6)−0.0258 (7)
Mg—N2i2.0552 (10)C12—C131.391 (2)
Mg—N22.0552 (10)C12—H120.9300
Mg—N1i2.0678 (11)C13—C141.366 (3)
Mg—N12.0678 (11)C13—H130.9300
Mg—N32.3798 (12)C14—C151.371 (3)
Mg—O1i2.3798 (12)C14—H140.9300
Mg—N3i2.3798 (12)C15—C161.386 (2)
N1—C11.3670 (17)C15—H150.9300
N1—C41.3720 (16)C16—H160.9300
N2—C91.3666 (17)C17—C181.380 (2)
N2—C61.3700 (16)C17—C221.3835 (18)
C1—C101.4121 (18)C18—C191.389 (2)
C1—C21.4421 (18)C18—H180.9300
C2—C31.3545 (19)C19—C201.377 (2)
C2—H20.9300C19—H190.9300
C3—C41.4371 (19)C20—C211.367 (2)
C3—H30.9300C20—H200.9300
C4—C51.4109 (18)C21—C221.3866 (19)
C5—C61.4068 (19)C21—H210.9300
C5—C171.5029 (17)C22—H220.9300
C6—C71.4425 (18)N3—C231.278 (3)
C7—C81.345 (2)C23—C241.429 (3)
C7—H70.9300C24—C26A1.355 (2)
C8—C91.4473 (18)C24—C25A1.357 (2)
C8—H80.9300C25A—C26Aii1.379 (2)
C9—C10i1.4079 (19)C25A—H25A0.9300
C10—C111.4962 (18)C26A—C25Aii1.379 (2)
C11—C121.379 (2)C26A—H26A0.9300
C11—C161.381 (2)
N2i—Mg—N2180.0N2—C9—C8109.27 (11)
N2i—Mg—N1i89.69 (4)C10i—C9—C8124.75 (12)
N2—Mg—N1i90.31 (4)C9i—C10—C1125.94 (12)
N2i—Mg—N190.31 (4)C9i—C10—C11116.57 (11)
N2—Mg—N189.69 (4)C1—C10—C11117.46 (12)
N1i—Mg—N1180.00 (6)C12—C11—C16118.37 (14)
N2i—Mg—N390.58 (4)C12—C11—C10121.54 (13)
N2—Mg—N389.42 (4)C16—C11—C10120.07 (13)
N1i—Mg—N392.22 (5)C11—C12—C13120.64 (16)
N1—Mg—N387.78 (5)C11—C12—H12119.7
N2i—Mg—O1i89.42 (4)C13—C12—H12119.7
N2—Mg—O1i90.58 (4)C14—C13—C12120.42 (17)
N1i—Mg—O1i87.78 (5)C14—C13—H13119.8
N1—Mg—O1i92.22 (5)C12—C13—H13119.8
N3—Mg—O1i180.0C13—C14—C15119.42 (15)
N2i—Mg—N3i89.42 (4)C13—C14—H14120.3
N2—Mg—N3i90.58 (4)C15—C14—H14120.3
N1i—Mg—N3i87.78 (5)C14—C15—C16120.40 (17)
N1—Mg—N3i92.22 (5)C14—C15—H15119.8
N3—Mg—N3i180.0C16—C15—H15119.8
O1i—Mg—N3i0.00 (5)C11—C16—C15120.74 (16)
C1—N1—C4106.86 (11)C11—C16—H16119.6
C1—N1—Mg126.20 (9)C15—C16—H16119.6
C4—N1—Mg126.85 (9)C18—C17—C22118.23 (12)
C9—N2—C6107.11 (10)C18—C17—C5121.67 (12)
C9—N2—Mg126.19 (9)C22—C17—C5120.06 (12)
C6—N2—Mg126.63 (9)C17—C18—C19120.57 (14)
N1—C1—C10125.41 (12)C17—C18—H18119.7
N1—C1—C2109.50 (11)C19—C18—H18119.7
C10—C1—C2125.07 (12)C20—C19—C18120.41 (15)
C3—C2—C1106.99 (12)C20—C19—H19119.8
C3—C2—H2126.5C18—C19—H19119.8
C1—C2—H2126.5C21—C20—C19119.51 (13)
C2—C3—C4107.15 (12)C21—C20—H20120.2
C2—C3—H3126.4C19—C20—H20120.2
C4—C3—H3126.4C20—C21—C22120.09 (13)
N1—C4—C5125.00 (12)C20—C21—H21120.0
N1—C4—C3109.50 (11)C22—C21—H21120.0
C5—C4—C3125.48 (12)C17—C22—C21121.14 (13)
C6—C5—C4125.88 (12)C17—C22—H22119.4
C6—C5—C17115.96 (11)C21—C22—H22119.4
C4—C5—C17118.15 (11)C23—N3—Mg129.10 (16)
N2—C6—C5125.82 (11)N3—C23—C24176.0 (3)
N2—C6—C7109.15 (11)C26A—C24—C25A118.27 (14)
C5—C6—C7125.04 (12)C26A—C24—C23123.09 (18)
C8—C7—C6107.45 (12)C25A—C24—C23118.58 (17)
C8—C7—H7126.3C24—C25A—C26Aii120.85 (15)
C6—C7—H7126.3C24—C25A—H25A119.6
C7—C8—C9107.02 (12)C26Aii—C25A—H25A119.6
C7—C8—H8126.5C24—C26A—C25Aii120.88 (15)
C9—C8—H8126.5C24—C26A—H26A119.6
N2—C9—C10i125.94 (12)C25Aii—C26A—H26A119.6
D—H···AD—HH···AD···AD—H···A
C12—H12···Cg12iii0.932.973.8860 (19)168
C14—H14···Cg14iv0.932.703.584 (2)159
C21—H21···Cg12v0.932.853.6240 (18)141
Table 1

Hydrogen-bond geometry (Å, °)

Cg12 and Cg14 are the centroids of the N2/C6–C9 C17–C22 rings, respectively.

D—H⋯A D—HH⋯A DA D—H⋯A
C12—H12⋯Cg12i 0.932.973.8860 (19)168
C14—H14⋯Cg14ii 0.932.703.584 (2)159
C21—H21⋯Cg12iii 0.932.853.6240 (18)141

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  Effect of five membered versus six membered meso-substituents on structure and electronic properties of Mg(II) porphyrins: a combined experimental and theoretical study.

Authors:  Avijit Ghosh; Shaikh M Mobin; Roland Fröhlich; Ray J Butcher; Dilip K Maity; Mangalampalli Ravikanth
Journal:  Inorg Chem       Date:  2010-09-20       Impact factor: 5.165

3.  Structural and zeolitic features of a 3D heterometallic porous architecture constructed from a {M(oxalate)4}4- building unit.

Authors:  Inhar Imaz; Georges Bravic; Jean-Pascal Sutter
Journal:  Chem Commun (Camb)       Date:  2005-01-10       Impact factor: 6.222

4.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

5.  Structure and magnetic properties of tetraarylporphinatomagnesium(II) electron transfer salts of 2,3,5,6-tetrafluoro-7,7,8,8-tetracyanoquinodimethane, TCNQF4.

Authors:  Wendy Hibbs; Atta M Arif; Mark Botoshansky; Menahem Kaftory; Joel S Miller
Journal:  Inorg Chem       Date:  2003-04-07       Impact factor: 5.165

6.  catena-Poly[[nickel(II)-μ(3)-1,1-dicyano-ethene-2,2-dithiol-ato-κS,S':N:N'-bis-[(15-crown-5)magnesium(II)]-μ(3)-1,1-dicyano-ethene-2,2-dithiol-ato-κN:N':S,S'] dichloride].

Authors:  Junli Yang; Chengjuan Li; Dacheng Li; Daqi Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-12
  6 in total

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