Literature DB >> 23476280

3β-Chloro-N-methoxy-N-methyl-cholest-5-ene-24-carboxamide.

Karilys González1, Karinel Nieves, Abimael D Rodríguez.   

Abstract

The title compound, C26H42ClNO2, is a 3β-chloro steroid with a Weinreb amide at the C-24 position. The two cyclo-hexane and the cyclo-hexene rings adopt chair and boat conformations, respectively. The cyclo-pentane ring has an envelope conformation.

Entities:  

Year:  2012        PMID: 23476280      PMCID: PMC3589044          DOI: 10.1107/S160053681204679X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound was obtained as part of our studies on the synthesis of chlorinated steroids as anti­malarial agents. For chlorination of 3β-hydroxyl-5-Δ steroids, see: Liu et al. (2005 ▶). For anti­malarial steroids, see: Corrales et al. (2011 ▶); Sharma et al. (2008 ▶). For the emerging role of chlorinated lipids and fatty acids in pathology, see: Spickett (2007 ▶). For the use of steryl chlorides as synthetic inter­mediates, see: Ochi et al. (1977 ▶). For liquid crystal properties of steryl chlorides, see: Leder (1971 ▶). For chloro­quine-resistant malaria, see: Wellems & Plowe (2001 ▶). For drug resistance in malaria, see: Bloland (2001 ▶).

Experimental

Crystal data

C26H42ClNO2 M = 436.06 Orthorhombic, a = 7.5263 (2) Å b = 16.2157 (4) Å c = 20.8850 (5) Å V = 2548.89 (11) Å3 Z = 4 Mo Kα radiation μ = 0.17 mm−1 T = 296 K 0.31 × 0.09 × 0.08 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008a ▶) T min = 0.949, T max = 0.987 23203 measured reflections 6244 independent reflections 3307 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.157 S = 1.01 6244 reflections 276 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.14 e Å−3 Absolute structure: Flack (1983 ▶), 2662 Friedel pairs Flack parameter: −0.04 (9) Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 1999 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008b ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008b ▶); molecular graphics: SHELXTL (Sheldrick, 2008b ▶); software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681204679X/fy2071sup1.cif Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681204679X/fy2071Isup2.cdx Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681204679X/fy2071Isup3.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H42ClNO2F(000) = 952
Mr = 436.06Dx = 1.136 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 5845 reflections
a = 7.5263 (2) Åθ = 2.7–20.9°
b = 16.2157 (4) ŵ = 0.17 mm1
c = 20.8850 (5) ÅT = 296 K
V = 2548.89 (11) Å3Needle, colourless
Z = 40.31 × 0.09 × 0.08 mm
Bruker APEXII CCD diffractometer6244 independent reflections
Radiation source: fine-focus sealed tube3307 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.035
φ and ω scansθmax = 28.3°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008a)h = −9→10
Tmin = 0.949, Tmax = 0.987k = −19→21
23203 measured reflectionsl = −27→25
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.056H-atom parameters constrained
wR(F2) = 0.157w = 1/[σ2(Fo2) + (0.0698P)2 + 0.2353P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max = 0.001
6244 reflectionsΔρmax = 0.19 e Å3
276 parametersΔρmin = −0.14 e Å3
0 restraintsAbsolute structure: Flack (1983), 2662 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.04 (9)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.4754 (4)0.8660 (2)0.82833 (14)0.0888 (8)
H1A0.50590.80750.82340.107*
C20.3024 (4)0.8823 (2)0.79438 (14)0.0873 (8)
H2A0.26790.93950.80010.105*
H2B0.20950.84760.81200.105*
C30.3269 (3)0.86371 (18)0.72355 (14)0.0786 (7)
H3A0.21500.87350.70180.094*
H3B0.35510.80570.71880.094*
C40.4729 (3)0.91473 (15)0.69012 (13)0.0666 (6)
C50.6421 (3)0.90625 (15)0.72909 (14)0.0721 (7)
C60.6235 (4)0.9177 (2)0.80067 (14)0.0901 (9)
H6A0.73450.90280.82130.108*
H6B0.60050.97530.80980.108*
C70.4179 (4)1.00624 (17)0.68853 (16)0.0969 (9)
H7A0.49911.03650.66200.145*
H7B0.42051.02830.73120.145*
H7C0.29991.01100.67150.145*
C80.7984 (3)0.89137 (17)0.70284 (15)0.0805 (7)
H80.89450.88440.73030.097*
C90.8336 (3)0.88485 (18)0.63301 (14)0.0823 (8)
H9A0.86360.82820.62280.099*
H9B0.93540.91890.62240.099*
C100.6762 (3)0.91138 (15)0.59167 (13)0.0655 (6)
H100.67330.97180.59030.079*
C110.5021 (3)0.88085 (15)0.62200 (13)0.0653 (6)
H110.51540.82110.62680.078*
C120.3419 (3)0.8934 (2)0.57734 (13)0.0838 (8)
H12A0.31190.95160.57680.101*
H12B0.24100.86400.59500.101*
C130.3702 (3)0.86456 (19)0.50792 (14)0.0820 (8)
H13A0.38050.80490.50710.098*
H13B0.26760.87980.48240.098*
C140.5371 (3)0.90269 (14)0.47859 (13)0.0650 (6)
C150.6915 (3)0.87954 (15)0.52369 (13)0.0661 (6)
H150.68800.81930.52720.079*
C160.8581 (3)0.89897 (19)0.48523 (13)0.0841 (8)
H16A0.95680.86470.49890.101*
H16B0.89110.95650.48990.101*
C170.8063 (3)0.87974 (18)0.41608 (15)0.0838 (8)
H17A0.87000.83150.40100.101*
H17B0.83550.92590.38850.101*
C180.6013 (3)0.86341 (15)0.41517 (13)0.0683 (7)
H180.58470.80370.41930.082*
C190.5143 (4)0.88930 (16)0.35166 (13)0.0748 (7)
H190.53420.94860.34630.090*
C200.3108 (4)0.8747 (2)0.35159 (16)0.0934 (9)
H20A0.25510.91250.38070.140*
H20B0.28630.81910.36480.140*
H20C0.26500.88340.30920.140*
C210.6022 (4)0.84559 (17)0.29503 (14)0.0828 (8)
H21A0.72990.85160.29890.099*
H21B0.57530.78720.29780.099*
C220.5466 (4)0.87628 (18)0.22971 (15)0.0924 (9)
H22A0.42380.86100.22220.111*
H22B0.55350.93600.22920.111*
C230.6578 (5)0.84295 (18)0.17692 (17)0.0880 (9)
C240.6782 (7)0.8149 (3)0.06221 (17)0.169 (2)
H24A0.66170.86000.03310.253*
H24B0.63730.76480.04260.253*
H24C0.80210.80980.07250.253*
C250.2820 (7)0.8083 (4)0.1041 (3)0.206 (3)
H25A0.25530.78690.14590.308*
H25B0.32440.76440.07730.308*
H25C0.17660.83160.08570.308*
C260.5199 (4)0.99713 (16)0.47055 (16)0.0927 (9)
H26A0.49931.02200.51160.139*
H26B0.42211.00920.44260.139*
H26C0.62751.01870.45250.139*
Cl10.45336 (14)0.88904 (7)0.91266 (4)0.1218 (4)
N10.5778 (4)0.83019 (19)0.12042 (14)0.1117 (10)
O10.8116 (3)0.82332 (15)0.18387 (12)0.1129 (7)
O20.4135 (4)0.86944 (18)0.10918 (12)0.1320 (10)
U11U22U33U12U13U23
C10.0777 (19)0.097 (2)0.091 (2)−0.0030 (17)−0.0064 (16)−0.0126 (16)
C20.0667 (16)0.102 (2)0.093 (2)−0.0062 (16)0.0050 (15)0.0007 (17)
C30.0428 (12)0.1019 (19)0.091 (2)−0.0067 (12)0.0009 (12)0.0023 (15)
C40.0453 (12)0.0642 (14)0.0902 (18)0.0023 (10)0.0011 (12)−0.0030 (13)
C50.0516 (14)0.0700 (15)0.0948 (19)−0.0081 (11)−0.0044 (13)−0.0106 (14)
C60.0706 (17)0.107 (2)0.092 (2)−0.0107 (16)−0.0056 (15)−0.0163 (17)
C70.094 (2)0.0828 (19)0.114 (2)0.0204 (16)0.0149 (19)−0.0036 (16)
C80.0492 (14)0.0975 (19)0.095 (2)−0.0045 (14)−0.0098 (13)−0.0044 (16)
C90.0358 (12)0.0944 (19)0.117 (2)0.0002 (12)−0.0061 (13)−0.0015 (17)
C100.0367 (11)0.0642 (13)0.0956 (18)−0.0018 (10)0.0029 (11)−0.0019 (13)
C110.0356 (11)0.0671 (14)0.0932 (17)−0.0009 (11)0.0039 (11)0.0005 (13)
C120.0402 (12)0.121 (2)0.0902 (19)0.0062 (13)0.0041 (12)−0.0024 (18)
C130.0367 (11)0.111 (2)0.098 (2)−0.0021 (13)−0.0015 (12)0.0061 (16)
C140.0389 (11)0.0667 (14)0.0894 (17)0.0043 (10)0.0049 (11)0.0033 (13)
C150.0379 (11)0.0656 (13)0.0947 (18)0.0012 (10)0.0050 (11)0.0048 (14)
C160.0430 (12)0.110 (2)0.099 (2)−0.0041 (13)0.0065 (13)0.0074 (17)
C170.0508 (13)0.0987 (19)0.102 (2)0.0067 (14)0.0164 (14)0.0180 (17)
C180.0510 (13)0.0613 (14)0.0927 (18)0.0052 (10)0.0045 (13)0.0092 (13)
C190.0675 (15)0.0658 (15)0.0912 (19)0.0138 (13)0.0064 (14)0.0027 (14)
C200.0644 (16)0.110 (2)0.106 (2)0.0140 (17)−0.0067 (16)0.0072 (18)
C210.0738 (17)0.0792 (18)0.095 (2)0.0127 (14)0.0052 (16)0.0098 (14)
C220.092 (2)0.0893 (19)0.096 (2)0.0216 (18)−0.0097 (18)−0.0166 (18)
C230.089 (2)0.0821 (19)0.093 (2)0.0076 (16)0.0044 (19)0.0093 (16)
C240.187 (5)0.238 (5)0.080 (3)0.081 (4)0.019 (3)0.009 (3)
C250.130 (4)0.230 (6)0.257 (7)−0.053 (4)−0.007 (4)−0.138 (6)
C260.091 (2)0.0758 (17)0.112 (2)0.0209 (15)−0.0037 (18)−0.0001 (16)
Cl10.1189 (7)0.1578 (9)0.0887 (5)−0.0178 (6)−0.0027 (5)−0.0117 (6)
N10.111 (2)0.138 (2)0.0864 (19)0.045 (2)0.0087 (18)−0.0013 (17)
O10.0845 (16)0.1295 (17)0.1247 (19)0.0151 (14)0.0060 (14)−0.0026 (15)
O20.140 (2)0.146 (2)0.1100 (18)0.051 (2)−0.0210 (16)−0.0116 (15)
C1—C21.506 (4)C14—C181.547 (4)
C1—C61.510 (4)C15—C161.522 (3)
C1—Cl11.808 (3)C15—H150.9800
C1—H1A0.9800C16—C171.528 (4)
C2—C31.521 (4)C16—H16A0.9700
C2—H2A0.9700C16—H16B0.9700
C2—H2B0.9700C17—C181.566 (4)
C3—C41.543 (4)C17—H17A0.9700
C3—H3A0.9700C17—H17B0.9700
C3—H3B0.9700C18—C191.538 (4)
C4—C51.518 (3)C18—H180.9800
C4—C71.541 (4)C19—C211.529 (4)
C4—C111.541 (4)C19—C201.550 (4)
C5—C81.320 (4)C19—H190.9800
C5—C61.513 (4)C20—H20A0.9600
C6—H6A0.9700C20—H20B0.9600
C6—H6B0.9700C20—H20C0.9600
C7—H7A0.9600C21—C221.511 (4)
C7—H7B0.9600C21—H21A0.9700
C7—H7C0.9600C21—H21B0.9700
C8—C91.486 (4)C22—C231.486 (4)
C8—H80.9300C22—H22A0.9700
C9—C101.527 (3)C22—H22B0.9700
C9—H9A0.9700C23—O11.209 (4)
C9—H9B0.9700C23—N11.341 (4)
C10—C151.515 (4)C24—N11.453 (4)
C10—C111.537 (3)C24—H24A0.9600
C10—H100.9800C24—H24B0.9600
C11—C121.538 (3)C24—H24C0.9600
C11—H110.9800C25—O21.405 (5)
C12—C131.538 (4)C25—H25A0.9600
C12—H12A0.9700C25—H25B0.9600
C12—H12B0.9700C25—H25C0.9600
C13—C141.529 (3)C26—H26A0.9600
C13—H13A0.9700C26—H26B0.9600
C13—H13B0.9700C26—H26C0.9600
C14—C151.542 (3)N1—O21.410 (4)
C14—C261.546 (3)
C2—C1—C6111.1 (2)C15—C14—C18100.81 (18)
C2—C1—Cl1110.1 (2)C26—C14—C18109.9 (2)
C6—C1—Cl1109.0 (2)C10—C15—C16119.1 (2)
C2—C1—H1A108.9C10—C15—C14115.59 (19)
C6—C1—H1A108.9C16—C15—C14104.4 (2)
Cl1—C1—H1A108.9C10—C15—H15105.5
C1—C2—C3108.6 (2)C16—C15—H15105.5
C1—C2—H2A110.0C14—C15—H15105.5
C3—C2—H2A110.0C15—C16—C17104.3 (2)
C1—C2—H2B110.0C15—C16—H16A110.9
C3—C2—H2B110.0C17—C16—H16A110.9
H2A—C2—H2B108.4C15—C16—H16B110.9
C2—C3—C4114.8 (2)C17—C16—H16B110.9
C2—C3—H3A108.6H16A—C16—H16B108.9
C4—C3—H3A108.6C16—C17—C18107.3 (2)
C2—C3—H3B108.6C16—C17—H17A110.3
C4—C3—H3B108.6C18—C17—H17A110.3
H3A—C3—H3B107.5C16—C17—H17B110.3
C5—C4—C7108.9 (2)C18—C17—H17B110.3
C5—C4—C11110.07 (19)H17A—C17—H17B108.5
C7—C4—C11111.2 (2)C19—C18—C14119.5 (2)
C5—C4—C3107.8 (2)C19—C18—C17112.6 (2)
C7—C4—C3109.6 (2)C14—C18—C17103.2 (2)
C11—C4—C3109.2 (2)C19—C18—H18106.9
C8—C5—C6121.0 (2)C14—C18—H18106.9
C8—C5—C4122.8 (3)C17—C18—H18106.9
C6—C5—C4116.2 (2)C21—C19—C18110.9 (2)
C1—C6—C5112.2 (2)C21—C19—C20110.9 (2)
C1—C6—H6A109.2C18—C19—C20112.3 (2)
C5—C6—H6A109.2C21—C19—H19107.5
C1—C6—H6B109.2C18—C19—H19107.5
C5—C6—H6B109.2C20—C19—H19107.5
H6A—C6—H6B107.9C19—C20—H20A109.5
C4—C7—H7A109.5C19—C20—H20B109.5
C4—C7—H7B109.5H20A—C20—H20B109.5
H7A—C7—H7B109.5C19—C20—H20C109.5
C4—C7—H7C109.5H20A—C20—H20C109.5
H7A—C7—H7C109.5H20B—C20—H20C109.5
H7B—C7—H7C109.5C22—C21—C19115.2 (2)
C5—C8—C9125.4 (2)C22—C21—H21A108.5
C5—C8—H8117.3C19—C21—H21A108.5
C9—C8—H8117.3C22—C21—H21B108.5
C8—C9—C10113.4 (2)C19—C21—H21B108.5
C8—C9—H9A108.9H21A—C21—H21B107.5
C10—C9—H9A108.9C23—C22—C21113.2 (2)
C8—C9—H9B108.9C23—C22—H22A108.9
C10—C9—H9B108.9C21—C22—H22A108.9
H9A—C9—H9B107.7C23—C22—H22B108.9
C15—C10—C9112.0 (2)C21—C22—H22B108.9
C15—C10—C11109.96 (19)H22A—C22—H22B107.7
C9—C10—C11109.7 (2)O1—C23—N1119.7 (3)
C15—C10—H10108.4O1—C23—C22123.1 (3)
C9—C10—H10108.4N1—C23—C22117.1 (3)
C11—C10—H10108.4N1—C24—H24A109.5
C10—C11—C12112.1 (2)N1—C24—H24B109.5
C10—C11—C4112.8 (2)H24A—C24—H24B109.5
C12—C11—C4113.62 (19)N1—C24—H24C109.5
C10—C11—H11105.9H24A—C24—H24C109.5
C12—C11—H11105.9H24B—C24—H24C109.5
C4—C11—H11105.9O2—C25—H25A109.5
C11—C12—C13115.00 (19)O2—C25—H25B109.5
C11—C12—H12A108.5H25A—C25—H25B109.5
C13—C12—H12A108.5O2—C25—H25C109.5
C11—C12—H12B108.5H25A—C25—H25C109.5
C13—C12—H12B108.5H25B—C25—H25C109.5
H12A—C12—H12B107.5C14—C26—H26A109.5
C14—C13—C12111.6 (2)C14—C26—H26B109.5
C14—C13—H13A109.3H26A—C26—H26B109.5
C12—C13—H13A109.3C14—C26—H26C109.5
C14—C13—H13B109.3H26A—C26—H26C109.5
C12—C13—H13B109.3H26B—C26—H26C109.5
H13A—C13—H13B108.0C23—N1—O2118.1 (3)
C13—C14—C15106.0 (2)C23—N1—C24121.9 (3)
C13—C14—C26112.0 (2)O2—N1—C24113.2 (3)
C15—C14—C26111.8 (2)C25—O2—N1108.1 (3)
C13—C14—C18115.7 (2)
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Review 4.  Chloroquine-resistant malaria.

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