Literature DB >> 23476278

A triclinic polymorph of methyl (3R,3'S)-1',1''-dimethyl-2,2''-dioxodispiro-[indoline-3,2'-pyrrolidine-3',3''-indoline]-4'-carboxyl-ate.

G Ganesh1, Panneer Selvam Yuvaraj, Chinthalapuri Divakara, Boreddy S R Reddy, A Subbiahpandi.   

Abstract

In the title compound, C22H21N3O4, the central pyrrolidine ring adopts a C-envelope conformation with a C atom 0.6593 (13) Å displaced from the mean plane formed by the remaining ring atoms. The indoline ring systems (r.m.s. devisations of 0.0356 and 0.0547 Å) are almost perpendicular to the mean plane of the pyrrolidine ring, making dihedral angles of 89.7 (6) and 82.5 (6)°. The acetate group attached to the pyrrolidine ring assumes an extended conformation. In the crystal,N-H⋯O and C-H⋯O hydrogen bonds connect adjacent molecules, forming an infinite tape extending along [1-1-1]. The crystal packing is further consolidated by strong π-π inter-actions with a centroid-centroid distance of 3.2585 (8) Å. The title compound is a polymorph of previously reported monoclinic structure [Ganesh et al. (2012 ▶). Acta Cryst. E68, o2902-o2903].

Entities:  

Year:  2012        PMID: 23476278      PMCID: PMC3589042          DOI: 10.1107/S160053681204706X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background literature and the previously reported polymorph, see: Ganesh et al. (2008). For a related structure, see: Wei et al. (2011 ▶).

Experimental

Crystal data

C22H21N3O4 M = 391.42 Triclinic, a = 9.4418 (3) Å b = 10.0132 (3) Å c = 12.8861 (4) Å α = 67.465 (2)° β = 88.237 (2)° γ = 62.842 (1)° V = 985.68 (5) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.25 × 0.22 × 0.19 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.978, T max = 0.983 23829 measured reflections 8469 independent reflections 5108 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.158 S = 1.08 8469 reflections 265 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 2012) ▶; software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681204706X/pv2603sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681204706X/pv2603Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H21N3O4Z = 2
Mr = 391.42F(000) = 412
Triclinic, P1Dx = 1.319 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.4418 (3) ÅCell parameters from 8469 reflections
b = 10.0132 (3) Åθ = 2.4–34.7°
c = 12.8861 (4) ŵ = 0.09 mm1
α = 67.465 (2)°T = 293 K
β = 88.237 (2)°Block, colourless
γ = 62.842 (1)°0.25 × 0.22 × 0.19 mm
V = 985.68 (5) Å3
Bruker APEXII CCD area-detector diffractometer8469 independent reflections
Radiation source: fine-focus sealed tube5108 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.028
ω and φ scansθmax = 34.7°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −15→15
Tmin = 0.978, Tmax = 0.983k = −16→16
23829 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.158H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0823P)2 + 0.0657P] where P = (Fo2 + 2Fc2)/3
8469 reflections(Δ/σ)max < 0.001
265 parametersΔρmax = 0.29 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.7776 (3)1.0526 (3)0.51871 (15)0.0796 (6)
H1A0.66721.10890.52720.119*
H1B0.83111.11340.52100.119*
H1C0.83140.94420.57970.119*
C20.77232 (13)0.91697 (13)0.39598 (9)0.0340 (2)
C30.76315 (11)0.95234 (11)0.26878 (8)0.02661 (19)
C40.76056 (12)1.11630 (12)0.21751 (10)0.0322 (2)
C50.77058 (15)1.16217 (15)0.30477 (11)0.0422 (3)
C60.7641 (2)1.3110 (2)0.28366 (17)0.0670 (5)
H60.77391.33930.34290.080*
C70.7427 (2)1.41584 (19)0.17152 (19)0.0769 (6)
H70.73741.51720.15480.092*
C80.7291 (2)1.37485 (16)0.08406 (16)0.0648 (4)
H80.71361.44900.00910.078*
C90.73808 (15)1.22285 (14)0.10554 (11)0.0443 (3)
H90.72921.19470.04610.053*
C100.61443 (11)0.95525 (12)0.21822 (9)0.0294 (2)
H100.59640.86890.27570.035*
C110.66671 (12)0.90746 (15)0.11868 (10)0.0370 (2)
H11A0.64830.81730.12450.044*
H11B0.60701.00060.04650.044*
C120.90212 (11)0.81284 (11)0.24386 (8)0.02558 (18)
C130.93053 (14)0.73661 (15)0.08136 (10)0.0399 (3)
H13A1.04050.71580.08530.060*
H13B0.88290.77890.00330.060*
H13C0.92820.63570.12500.060*
C140.46237 (12)1.11772 (13)0.18539 (10)0.0347 (2)
C150.2897 (3)1.3079 (2)0.25589 (17)0.0936 (7)
H15A0.31431.39460.21310.140*
H15B0.26441.31250.32760.140*
H15C0.19861.32140.21350.140*
C160.92790 (12)0.63976 (11)0.32962 (8)0.0289 (2)
C171.16767 (12)0.63888 (13)0.34810 (9)0.0326 (2)
C181.06891 (11)0.79224 (12)0.26043 (9)0.0299 (2)
C191.13393 (14)0.89045 (15)0.19952 (12)0.0440 (3)
H191.06930.99230.13970.053*
C201.29723 (16)0.83568 (18)0.22851 (14)0.0543 (3)
H201.34220.90140.18800.065*
C211.39322 (15)0.68469 (19)0.31685 (14)0.0547 (4)
H211.50240.64990.33530.066*
C221.32993 (14)0.58367 (17)0.37874 (12)0.0482 (3)
H221.39460.48220.43890.058*
N10.78263 (14)1.03949 (13)0.41018 (9)0.0459 (3)
N20.83966 (10)0.85688 (10)0.12758 (7)0.02941 (18)
N31.08062 (11)0.55400 (11)0.38933 (8)0.0349 (2)
H31.11910.45870.44580.042*
O10.77037 (12)0.79974 (10)0.47206 (7)0.0499 (2)
O20.83142 (10)0.58935 (10)0.33842 (7)0.0409 (2)
O30.38293 (12)1.20557 (12)0.09240 (8)0.0593 (3)
O40.42723 (12)1.15085 (11)0.27609 (8)0.0563 (3)
U11U22U33U12U13U23
C10.1180 (16)0.0905 (13)0.0559 (10)−0.0537 (12)0.0155 (10)−0.0508 (10)
C20.0382 (5)0.0283 (5)0.0297 (5)−0.0120 (4)0.0025 (4)−0.0110 (4)
C30.0304 (4)0.0215 (4)0.0268 (5)−0.0134 (3)0.0023 (3)−0.0077 (3)
C40.0331 (5)0.0223 (4)0.0400 (6)−0.0148 (4)0.0053 (4)−0.0098 (4)
C50.0475 (6)0.0353 (6)0.0548 (8)−0.0246 (5)0.0098 (5)−0.0234 (5)
C60.0847 (11)0.0541 (8)0.0965 (13)−0.0476 (8)0.0291 (9)−0.0476 (9)
C70.0947 (13)0.0401 (7)0.1167 (16)−0.0464 (9)0.0458 (11)−0.0374 (9)
C80.0760 (10)0.0301 (6)0.0769 (11)−0.0284 (7)0.0299 (8)−0.0089 (7)
C90.0500 (6)0.0282 (5)0.0453 (7)−0.0189 (5)0.0117 (5)−0.0064 (5)
C100.0274 (4)0.0264 (4)0.0334 (5)−0.0130 (4)0.0027 (4)−0.0112 (4)
C110.0291 (4)0.0416 (6)0.0421 (6)−0.0132 (4)−0.0001 (4)−0.0234 (5)
C120.0269 (4)0.0216 (4)0.0264 (5)−0.0127 (3)0.0022 (3)−0.0067 (3)
C130.0400 (5)0.0421 (6)0.0370 (6)−0.0152 (5)0.0088 (4)−0.0216 (5)
C140.0307 (5)0.0321 (5)0.0385 (6)−0.0134 (4)0.0060 (4)−0.0142 (4)
C150.0981 (14)0.0496 (9)0.0712 (11)0.0100 (9)0.0338 (10)−0.0235 (8)
C160.0345 (5)0.0230 (4)0.0280 (5)−0.0140 (4)0.0065 (4)−0.0093 (4)
C170.0308 (4)0.0308 (5)0.0313 (5)−0.0122 (4)0.0003 (4)−0.0110 (4)
C180.0280 (4)0.0275 (4)0.0323 (5)−0.0141 (4)0.0019 (4)−0.0093 (4)
C190.0375 (5)0.0375 (6)0.0529 (7)−0.0237 (5)0.0029 (5)−0.0075 (5)
C200.0395 (6)0.0593 (8)0.0714 (10)−0.0340 (6)0.0086 (6)−0.0215 (7)
C210.0313 (5)0.0623 (8)0.0714 (9)−0.0229 (6)0.0003 (6)−0.0275 (7)
C220.0324 (5)0.0454 (7)0.0511 (7)−0.0102 (5)−0.0081 (5)−0.0143 (6)
N10.0614 (6)0.0455 (6)0.0404 (6)−0.0272 (5)0.0053 (5)−0.0250 (5)
N20.0285 (4)0.0307 (4)0.0262 (4)−0.0124 (3)0.0022 (3)−0.0112 (3)
N30.0359 (4)0.0236 (4)0.0309 (5)−0.0102 (3)0.0015 (3)−0.0025 (3)
O10.0732 (6)0.0317 (4)0.0308 (4)−0.0189 (4)0.0122 (4)−0.0076 (3)
O20.0455 (4)0.0325 (4)0.0490 (5)−0.0256 (3)0.0095 (4)−0.0125 (4)
O30.0468 (5)0.0492 (5)0.0499 (6)0.0017 (4)−0.0116 (4)−0.0191 (5)
O40.0584 (6)0.0415 (5)0.0428 (5)−0.0039 (4)0.0154 (4)−0.0178 (4)
C1—N11.4514 (18)C12—N21.4484 (13)
C1—H1A0.9600C12—C181.5028 (13)
C1—H1B0.9600C12—C161.5645 (13)
C1—H1C0.9600C13—N21.4548 (14)
C2—O11.2149 (13)C13—H13A0.9600
C2—N11.3529 (15)C13—H13B0.9600
C2—C31.5348 (14)C13—H13C0.9600
C3—C41.5052 (13)C14—O31.1904 (14)
C3—C101.5497 (13)C14—O41.3263 (14)
C3—C121.5558 (13)C15—O41.4389 (17)
C4—C91.3775 (16)C15—H15A0.9600
C4—C51.3879 (17)C15—H15B0.9600
C5—C61.3808 (18)C15—H15C0.9600
C5—N11.4035 (17)C16—O21.2112 (12)
C6—C71.376 (3)C16—N31.3565 (13)
C6—H60.9300C17—C221.3803 (15)
C7—C81.366 (3)C17—C181.3899 (14)
C7—H70.9300C17—N31.3946 (14)
C8—C91.4003 (18)C18—C191.3748 (15)
C8—H80.9300C19—C201.3871 (16)
C9—H90.9300C19—H190.9300
C10—C141.5048 (14)C20—C211.377 (2)
C10—C111.5276 (15)C20—H200.9300
C10—H100.9800C21—C221.386 (2)
C11—N21.4656 (13)C21—H210.9300
C11—H11A0.9700C22—H220.9300
C11—H11B0.9700N3—H30.8600
N1—C1—H1A109.5C18—C12—C16101.43 (7)
N1—C1—H1B109.5C3—C12—C16110.59 (7)
H1A—C1—H1B109.5N2—C13—H13A109.5
N1—C1—H1C109.5N2—C13—H13B109.5
H1A—C1—H1C109.5H13A—C13—H13B109.5
H1B—C1—H1C109.5N2—C13—H13C109.5
O1—C2—N1125.04 (11)H13A—C13—H13C109.5
O1—C2—C3126.49 (10)H13B—C13—H13C109.5
N1—C2—C3108.47 (9)O3—C14—O4123.86 (10)
C4—C3—C2101.98 (8)O3—C14—C10126.06 (10)
C4—C3—C10113.45 (8)O4—C14—C10110.09 (9)
C2—C3—C10113.21 (8)O4—C15—H15A109.5
C4—C3—C12114.98 (8)O4—C15—H15B109.5
C2—C3—C12113.55 (8)H15A—C15—H15B109.5
C10—C3—C12100.24 (7)O4—C15—H15C109.5
C9—C4—C5120.03 (10)H15A—C15—H15C109.5
C9—C4—C3131.23 (10)H15B—C15—H15C109.5
C5—C4—C3108.51 (10)O2—C16—N3126.22 (9)
C6—C5—C4122.02 (14)O2—C16—C12126.37 (9)
C6—C5—N1128.08 (13)N3—C16—C12107.37 (8)
C4—C5—N1109.88 (10)C22—C17—C18121.67 (11)
C7—C6—C5117.35 (15)C22—C17—N3128.28 (10)
C7—C6—H6121.3C18—C17—N3109.88 (9)
C5—C6—H6121.3C19—C18—C17119.80 (10)
C8—C7—C6121.67 (13)C19—C18—C12130.94 (9)
C8—C7—H7119.2C17—C18—C12109.02 (8)
C6—C7—H7119.2C18—C19—C20119.12 (11)
C7—C8—C9120.99 (15)C18—C19—H19120.4
C7—C8—H8119.5C20—C19—H19120.4
C9—C8—H8119.5C21—C20—C19120.50 (12)
C4—C9—C8117.92 (14)C21—C20—H20119.8
C4—C9—H9121.0C19—C20—H20119.8
C8—C9—H9121.0C20—C21—C22121.16 (11)
C14—C10—C11114.04 (9)C20—C21—H21119.4
C14—C10—C3113.06 (8)C22—C21—H21119.4
C11—C10—C3104.49 (8)C17—C22—C21117.72 (12)
C14—C10—H10108.3C17—C22—H22121.1
C11—C10—H10108.3C21—C22—H22121.1
C3—C10—H10108.3C2—N1—C5111.02 (10)
N2—C11—C10105.43 (8)C2—N1—C1122.76 (12)
N2—C11—H11A110.7C5—N1—C1125.37 (12)
C10—C11—H11A110.7C12—N2—C13115.72 (8)
N2—C11—H11B110.7C12—N2—C11108.13 (8)
C10—C11—H11B110.7C13—N2—C11114.45 (8)
H11A—C11—H11B108.8C16—N3—C17111.89 (8)
N2—C12—C18114.11 (8)C16—N3—H3124.1
N2—C12—C3100.86 (7)C17—N3—H3124.1
C18—C12—C3117.03 (8)C14—O4—C15116.15 (12)
N2—C12—C16113.33 (8)
O1—C2—C3—C4176.72 (11)C18—C12—C16—O2−171.33 (10)
N1—C2—C3—C4−3.10 (11)C3—C12—C16—O263.84 (13)
O1—C2—C3—C1054.46 (14)N2—C12—C16—N3129.09 (9)
N1—C2—C3—C10−125.36 (10)C18—C12—C16—N36.33 (10)
O1—C2—C3—C12−58.99 (14)C3—C12—C16—N3−118.50 (9)
N1—C2—C3—C12121.20 (10)C22—C17—C18—C192.17 (18)
C2—C3—C4—C9−173.11 (11)N3—C17—C18—C19−173.57 (10)
C10—C3—C4—C9−51.01 (15)C22—C17—C18—C12177.20 (10)
C12—C3—C4—C963.56 (15)N3—C17—C18—C121.46 (12)
C2—C3—C4—C51.16 (11)N2—C12—C18—C1947.46 (15)
C10—C3—C4—C5123.25 (10)C3—C12—C18—C19−69.93 (15)
C12—C3—C4—C5−122.17 (10)C16—C12—C18—C19169.68 (12)
C9—C4—C5—C6−2.22 (19)N2—C12—C18—C17−126.83 (9)
C3—C4—C5—C6−177.24 (12)C3—C12—C18—C17115.78 (10)
C9—C4—C5—N1176.11 (10)C16—C12—C18—C17−4.61 (11)
C3—C4—C5—N11.09 (13)C17—C18—C19—C20−1.35 (19)
C4—C5—C6—C71.7 (2)C12—C18—C19—C20−175.14 (12)
N1—C5—C6—C7−176.26 (14)C18—C19—C20—C210.2 (2)
C5—C6—C7—C8−0.3 (3)C19—C20—C21—C220.1 (2)
C6—C7—C8—C9−0.6 (3)C18—C17—C22—C21−1.76 (19)
C5—C4—C9—C81.18 (18)N3—C17—C22—C21173.13 (12)
C3—C4—C9—C8174.90 (12)C20—C21—C22—C170.6 (2)
C7—C8—C9—C40.2 (2)O1—C2—N1—C5−175.84 (11)
C4—C3—C10—C14−33.41 (12)C3—C2—N1—C53.98 (13)
C2—C3—C10—C1482.20 (10)O1—C2—N1—C1−5.9 (2)
C12—C3—C10—C14−156.52 (8)C3—C2—N1—C1173.94 (13)
C4—C3—C10—C1191.15 (10)C6—C5—N1—C2174.92 (14)
C2—C3—C10—C11−153.24 (8)C4—C5—N1—C2−3.28 (15)
C12—C3—C10—C11−31.96 (9)C6—C5—N1—C15.3 (2)
C14—C10—C11—N2132.27 (9)C4—C5—N1—C1−172.92 (14)
C3—C10—C11—N28.34 (11)C18—C12—N2—C1362.19 (11)
C4—C3—C12—N2−77.70 (9)C3—C12—N2—C13−171.46 (8)
C2—C3—C12—N2165.37 (8)C16—C12—N2—C13−53.25 (11)
C10—C3—C12—N244.33 (8)C18—C12—N2—C11−167.94 (8)
C4—C3—C12—C1846.69 (12)C3—C12—N2—C11−41.58 (9)
C2—C3—C12—C18−70.23 (11)C16—C12—N2—C1176.63 (10)
C10—C3—C12—C18168.72 (8)C10—C11—N2—C1221.22 (11)
C4—C3—C12—C16162.12 (8)C10—C11—N2—C13151.79 (9)
C2—C3—C12—C1645.19 (10)O2—C16—N3—C17171.68 (10)
C10—C3—C12—C16−75.85 (9)C12—C16—N3—C17−5.99 (11)
C11—C10—C14—O31.20 (16)C22—C17—N3—C16−172.33 (12)
C3—C10—C14—O3120.39 (13)C18—C17—N3—C163.04 (12)
C11—C10—C14—O4−178.99 (9)O3—C14—O4—C15−3.9 (2)
C3—C10—C14—O4−59.81 (12)C10—C14—O4—C15176.33 (15)
N2—C12—C16—O2−48.57 (13)
D—H···AD—HH···AD···AD—H···A
N3—H3···O1i0.862.102.9107 (12)157
C15—H15B···O1ii0.962.473.363 (2)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3⋯O1i 0.862.102.9107 (12)157
C15—H15B⋯O1ii 0.962.473.363 (2)155

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1'-Methyl-4'-[4-(trifluoro-meth-yl)phen-yl]dispiro-[indan-2,2'-pyrrolidine-3',2''-indan]-1,3,1''-trione.

Authors:  Ang Chee Wei; Mohamed Ashraf Ali; Tan Soo Choon; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-29

3.  Methyl (3R*,3'S*)-1',1''-dimethyl-2,2''-dioxodispiro-[indoline-3,2'-pyrrolidine-3',3''-indoline]-4'-carboxyl-ate.

Authors:  G Ganesh; Panneer Selvam Yuvaraj; E Govindan; Boreddy S R Reddy; A Subbiahpandi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-08

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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