Literature DB >> 23476273

5,10,15,20-Tetra-kis(4-acetyl-oxyphen-yl)porphyrin including an unknown solvate.

Micael D Miranda1, Manuela Ramos Silva, Teresa M R Maria, Avula Balakrishna, Abilio J F N Sobral.   

Abstract

Mol-ecules of the title compound, C52H38N4O8, are located on an inversion center so that the asymmetric cell contains one half of the mol-ecule. The macrocycle exhibits a ruffled conformation with a maximum deviation of 0.16 Å for the 24 macrocycle atoms: the dihedral angle between adjacent five-membered rings is 5.13 (19)°. The benzene rings are rotated by 70.25 (19)° with respect to their adjacent protonated five-membered rings, and by 65.56 (19)° with respect to the unprotonated rings. The porphyrin conformation is supported by bifurcated N-H⋯(N,N) hydrogen bonds. The structure contained poorly resolved solvent mol-ecules in voids of volume 217 Å(3) per unit cell. The latter were treated using the SQUEEZE routine in PLATON [Spek (2009 ▶). Acta Cryst. D65, 148-155]. As the solvent could not be identified exactly, it was not included in the calculation of the overall formula weight, density and absorption coefficient.

Entities:  

Year:  2012        PMID: 23476273      PMCID: PMC3589037          DOI: 10.1107/S1600536812047332

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background on porphyrin and porphyrin precursors synthesized in our group, see Paixão, Matos Beja et al. (2002 ▶); Paixão, Ramos Silva et al. (2002 ▶); Paixão et al. (2003 ▶); Ramos Silva et al. (2002a ▶,b ▶); Sobral et al. (2001a ▶,b ▶). For the applications of porphyrins, see: Zhang et al. (2010 ▶); Eichhorn (2000 ▶).

Experimental

Crystal data

C52H38N4O8 M = 846.86 Triclinic, a = 6.6203 (2) Å b = 14.1043 (3) Å c = 14.4936 (3) Å α = 113.862 (1)° β = 97.771 (2)° γ = 98.060 (2)° V = 1197.58 (5) Å3 Z = 1 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.30 × 0.12 × 0.04 mm

Data collection

Bruker APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.790, T max = 0.999 24062 measured reflections 4566 independent reflections 2956 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.080 wR(F 2) = 0.248 S = 1.14 4566 reflections 291 parameters H-atom parameters constrained Δρmax = 0.98 e Å−3 Δρmin = −0.51 e Å−3 Data collection: SMART (Bruker, 2003 ▶); cell refinement: SAINT (Bruker, 2003 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812047332/hb6985sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812047332/hb6985Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C52H38N4O8Z = 1
Mr = 846.86F(000) = 442
Triclinic, P1Dx = 1.174 Mg m3
a = 6.6203 (2) ÅMo Kα radiation, λ = 0.71073 Å
b = 14.1043 (3) ÅCell parameters from 4592 reflections
c = 14.4936 (3) Åθ = 2.9–21.4°
α = 113.862 (1)°µ = 0.08 mm1
β = 97.771 (2)°T = 293 K
γ = 98.060 (2)°Plate, violet
V = 1197.58 (5) Å30.30 × 0.12 × 0.04 mm
Bruker APEX CCD area-detector diffractometer4566 independent reflections
Radiation source: fine-focus sealed tube2956 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
φ and ω scansθmax = 25.8°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 2000)h = −8→8
Tmin = 0.790, Tmax = 0.999k = −17→17
24062 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.080Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.248H-atom parameters constrained
S = 1.14w = 1/[σ2(Fo2) + (0.1221P)2 + 0.5589P] where P = (Fo2 + 2Fc2)/3
4566 reflections(Δ/σ)max = 0.040
291 parametersΔρmax = 0.98 e Å3
0 restraintsΔρmin = −0.51 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.7700 (3)0.90482 (18)0.36681 (17)0.0397 (6)
H10.85530.95290.42120.048*
N21.1829 (3)1.03171 (17)0.41002 (17)0.0400 (6)
O10.8965 (4)0.7835 (2)−0.19208 (16)0.0709 (7)
O21.2299 (4)0.8442 (2)−0.1891 (2)0.0810 (8)
O3−0.1992 (4)0.5305 (2)0.3829 (3)0.0907 (9)
O4−0.1461 (12)0.4164 (5)0.2427 (5)0.270 (4)
C10.5249 (4)0.8381 (2)0.4526 (2)0.0404 (7)
C20.5916 (4)0.8419 (2)0.3666 (2)0.0399 (7)
C30.4952 (4)0.7749 (2)0.2613 (2)0.0477 (8)
H30.37130.72400.23770.057*
C40.6157 (5)0.7981 (3)0.2015 (2)0.0511 (8)
H40.58810.76640.12970.061*
C50.7918 (4)0.8795 (2)0.2676 (2)0.0418 (7)
C60.9617 (4)0.9196 (2)0.2367 (2)0.0414 (7)
C71.1447 (4)0.9906 (2)0.3043 (2)0.0419 (7)
C81.3182 (5)1.0335 (2)0.2720 (2)0.0513 (8)
H81.33061.01760.20440.062*
C91.4573 (5)1.1004 (3)0.3576 (2)0.0511 (8)
H91.58461.14020.36060.061*
C101.3752 (4)1.1001 (2)0.4445 (2)0.0410 (7)
C110.9478 (5)0.8834 (2)0.1239 (2)0.0453 (7)
C121.0830 (5)0.8245 (3)0.0745 (2)0.0601 (9)
H121.18290.80670.11250.072*
C131.0738 (6)0.7915 (3)−0.0297 (3)0.0672 (10)
H131.16580.7517−0.06200.081*
C140.9254 (5)0.8187 (3)−0.0849 (2)0.0558 (9)
C150.7864 (5)0.8749 (3)−0.0391 (2)0.0579 (9)
H150.68480.8913−0.07770.070*
C160.7987 (5)0.9072 (3)0.0653 (2)0.0529 (8)
H160.70460.94580.09690.063*
C171.0572 (6)0.7993 (3)−0.2359 (3)0.0599 (9)
C180.9824 (6)0.7539 (3)−0.3500 (3)0.0720 (11)
H18A0.99960.8098−0.37180.108*
H18B0.83750.7197−0.36820.108*
H18C1.06200.7030−0.38340.108*
C190.3332 (4)0.7556 (2)0.4305 (2)0.0411 (7)
C200.1366 (5)0.7666 (3)0.3969 (3)0.0550 (8)
H200.12150.82760.38880.066*
C21−0.0373 (5)0.6893 (3)0.3751 (3)0.0620 (9)
H21−0.16850.69670.35050.074*
C22−0.0155 (5)0.6014 (3)0.3900 (3)0.0575 (9)
C230.1759 (5)0.5883 (3)0.4238 (3)0.0658 (10)
H230.18960.52800.43340.079*
C240.3492 (5)0.6658 (3)0.4436 (3)0.0575 (9)
H240.48040.65700.46640.069*
C25−0.2590 (11)0.4459 (5)0.3054 (5)0.119 (2)
C26−0.4600 (7)0.3784 (4)0.2982 (4)0.1021 (16)
H26A−0.46790.30640.25020.153*
H26B−0.57420.40390.27480.153*
H26C−0.46770.38120.36490.153*
U11U22U33U12U13U23
N10.0341 (12)0.0479 (12)0.0322 (12)−0.0020 (10)0.0051 (9)0.0165 (10)
N20.0370 (13)0.0456 (12)0.0342 (12)−0.0015 (10)0.0070 (10)0.0176 (10)
O10.0544 (14)0.1086 (19)0.0343 (11)−0.0056 (13)0.0089 (10)0.0232 (12)
O20.0619 (16)0.0996 (19)0.0612 (15)−0.0139 (15)0.0127 (13)0.0248 (14)
O30.0685 (18)0.0697 (16)0.109 (2)−0.0121 (14)0.0007 (16)0.0276 (16)
O40.299 (7)0.196 (5)0.175 (5)−0.122 (5)0.121 (5)−0.023 (4)
C10.0297 (14)0.0450 (14)0.0472 (16)0.0001 (12)0.0055 (12)0.0239 (12)
C20.0334 (14)0.0447 (14)0.0406 (15)0.0011 (12)0.0046 (11)0.0207 (12)
C30.0365 (15)0.0565 (17)0.0412 (16)−0.0064 (13)0.0007 (12)0.0199 (14)
C40.0438 (17)0.0618 (18)0.0358 (15)−0.0013 (14)−0.0014 (13)0.0166 (14)
C50.0394 (15)0.0483 (15)0.0353 (14)0.0039 (13)0.0025 (12)0.0191 (12)
C60.0424 (15)0.0488 (15)0.0327 (14)0.0037 (13)0.0065 (12)0.0196 (12)
C70.0421 (16)0.0486 (15)0.0362 (14)0.0010 (13)0.0090 (12)0.0221 (12)
C80.0513 (18)0.0622 (18)0.0382 (15)−0.0011 (15)0.0123 (13)0.0229 (14)
C90.0425 (16)0.0617 (18)0.0452 (16)−0.0079 (14)0.0144 (13)0.0236 (14)
C100.0362 (15)0.0457 (14)0.0408 (15)0.0016 (12)0.0069 (12)0.0210 (12)
C110.0430 (16)0.0534 (16)0.0367 (15)0.0012 (13)0.0084 (12)0.0198 (13)
C120.0515 (19)0.085 (2)0.0425 (17)0.0186 (17)0.0065 (14)0.0258 (16)
C130.060 (2)0.089 (3)0.0459 (19)0.0179 (19)0.0127 (16)0.0211 (18)
C140.0491 (18)0.075 (2)0.0317 (15)−0.0069 (16)0.0033 (13)0.0195 (15)
C150.0530 (19)0.079 (2)0.0444 (17)0.0081 (17)0.0056 (14)0.0324 (16)
C160.0493 (18)0.0665 (19)0.0443 (17)0.0124 (15)0.0132 (14)0.0243 (15)
C170.060 (2)0.067 (2)0.0448 (18)0.0034 (17)0.0142 (16)0.0192 (16)
C180.079 (3)0.086 (3)0.0442 (19)0.010 (2)0.0208 (18)0.0222 (18)
C190.0344 (15)0.0481 (15)0.0400 (15)−0.0001 (12)0.0073 (11)0.0214 (12)
C200.0360 (16)0.0550 (17)0.078 (2)0.0039 (14)0.0074 (15)0.0366 (16)
C210.0350 (17)0.067 (2)0.085 (2)0.0023 (15)0.0050 (16)0.0390 (18)
C220.0392 (17)0.0559 (18)0.068 (2)−0.0092 (15)0.0073 (15)0.0252 (16)
C230.053 (2)0.0539 (18)0.092 (3)−0.0018 (16)0.0063 (18)0.0406 (18)
C240.0377 (17)0.0606 (19)0.078 (2)0.0025 (14)0.0046 (15)0.0387 (17)
C250.136 (5)0.106 (4)0.081 (3)−0.023 (4)0.005 (3)0.027 (3)
C260.071 (3)0.084 (3)0.126 (4)−0.032 (2)0.001 (3)0.042 (3)
N1—C51.368 (4)C11—C161.380 (4)
N1—C21.374 (3)C11—C121.380 (5)
N1—H10.8600C12—C131.378 (5)
N2—C71.372 (3)C12—H120.9300
N2—C101.376 (3)C13—C141.376 (5)
O1—C171.348 (4)C13—H130.9300
O1—C141.402 (4)C14—C151.364 (5)
O2—C171.187 (4)C15—C161.379 (4)
O3—C251.226 (6)C15—H150.9300
O3—C221.425 (4)C16—H160.9300
O4—C251.235 (8)C17—C181.490 (5)
C1—C21.395 (4)C18—H18A0.9600
C1—C10i1.394 (4)C18—H18B0.9600
C1—C191.497 (4)C18—H18C0.9600
C2—C31.425 (4)C19—C241.370 (4)
C3—C41.356 (4)C19—C201.379 (4)
C3—H30.9300C20—C211.373 (4)
C4—C51.424 (4)C20—H200.9300
C4—H40.9300C21—C221.365 (5)
C5—C61.396 (4)C21—H210.9300
C6—C71.406 (4)C22—C231.360 (5)
C6—C111.488 (4)C23—C241.378 (4)
C7—C81.445 (4)C23—H230.9300
C8—C91.333 (4)C24—H240.9300
C8—H80.9300C25—C261.489 (7)
C9—C101.439 (4)C26—H26A0.9600
C9—H90.9300C26—H26B0.9600
C10—C1i1.394 (4)C26—H26C0.9600
C5—N1—C2109.8 (2)C15—C14—C13121.4 (3)
C5—N1—H1125.1C15—C14—O1115.9 (3)
C2—N1—H1125.1C13—C14—O1122.5 (3)
C7—N2—C10105.8 (2)C14—C15—C16119.0 (3)
C17—O1—C14121.0 (3)C14—C15—H15120.5
C25—O3—C22118.6 (5)C16—C15—H15120.5
C2—C1—C10i126.2 (3)C11—C16—C15121.4 (3)
C2—C1—C19116.0 (2)C11—C16—H16119.3
C10i—C1—C19117.6 (3)C15—C16—H16119.3
N1—C2—C1126.8 (2)O2—C17—O1124.2 (3)
N1—C2—C3106.9 (2)O2—C17—C18126.3 (3)
C1—C2—C3126.2 (3)O1—C17—C18109.5 (3)
C4—C3—C2108.1 (2)C17—C18—H18A109.5
C4—C3—H3126.0C17—C18—H18B109.5
C2—C3—H3126.0H18A—C18—H18B109.5
C3—C4—C5108.2 (3)C17—C18—H18C109.5
C3—C4—H4125.9H18A—C18—H18C109.5
C5—C4—H4125.9H18B—C18—H18C109.5
N1—C5—C6126.7 (2)C24—C19—C20117.8 (3)
N1—C5—C4107.0 (3)C24—C19—C1120.2 (3)
C6—C5—C4126.2 (3)C20—C19—C1121.9 (3)
C5—C6—C7124.7 (3)C21—C20—C19121.2 (3)
C5—C6—C11117.3 (2)C21—C20—H20119.4
C7—C6—C11118.0 (3)C19—C20—H20119.4
N2—C7—C6125.5 (3)C22—C21—C20119.3 (3)
N2—C7—C8110.0 (2)C22—C21—H21120.4
C6—C7—C8124.5 (3)C20—C21—H21120.4
C9—C8—C7106.8 (3)C21—C22—C23121.0 (3)
C9—C8—H8126.6C21—C22—O3118.3 (3)
C7—C8—H8126.6C23—C22—O3120.1 (3)
C8—C9—C10107.8 (3)C22—C23—C24119.0 (3)
C8—C9—H9126.1C22—C23—H23120.5
C10—C9—H9126.1C24—C23—H23120.5
N2—C10—C1i125.9 (3)C23—C24—C19121.6 (3)
N2—C10—C9109.6 (2)C23—C24—H24119.2
C1i—C10—C9124.6 (3)C19—C24—H24119.2
C16—C11—C12117.9 (3)O3—C25—O4120.1 (6)
C16—C11—C6121.1 (3)O3—C25—C26116.5 (6)
C12—C11—C6121.0 (3)O4—C25—C26123.1 (5)
C13—C12—C11121.7 (3)C25—C26—H26A109.5
C13—C12—H12119.1C25—C26—H26B109.5
C11—C12—H12119.1H26A—C26—H26B109.5
C14—C13—C12118.5 (3)C25—C26—H26C109.5
C14—C13—H13120.7H26A—C26—H26C109.5
C12—C13—H13120.7H26B—C26—H26C109.5
C5—N1—C2—C1174.5 (3)C7—C6—C11—C1263.6 (4)
C5—N1—C2—C3−1.0 (3)C16—C11—C12—C131.1 (5)
C10i—C1—C2—N11.9 (5)C6—C11—C12—C13−179.2 (3)
C19—C1—C2—N1−175.0 (3)C11—C12—C13—C140.1 (6)
C10i—C1—C2—C3176.6 (3)C12—C13—C14—C15−1.5 (5)
C19—C1—C2—C3−0.3 (4)C12—C13—C14—O1−176.2 (3)
N1—C2—C3—C40.2 (3)C17—O1—C14—C15131.0 (4)
C1—C2—C3—C4−175.3 (3)C17—O1—C14—C13−54.0 (5)
C2—C3—C4—C50.6 (4)C13—C14—C15—C161.5 (5)
C2—N1—C5—C6−174.2 (3)O1—C14—C15—C16176.6 (3)
C2—N1—C5—C41.4 (3)C12—C11—C16—C15−1.1 (5)
C3—C4—C5—N1−1.2 (4)C6—C11—C16—C15179.3 (3)
C3—C4—C5—C6174.4 (3)C14—C15—C16—C11−0.2 (5)
N1—C5—C6—C72.8 (5)C14—O1—C17—O2−1.2 (6)
C4—C5—C6—C7−171.9 (3)C14—O1—C17—C18179.9 (3)
N1—C5—C6—C11−177.8 (3)C2—C1—C19—C24105.4 (3)
C4—C5—C6—C117.5 (5)C10i—C1—C19—C24−71.8 (4)
C10—N2—C7—C6−177.7 (3)C2—C1—C19—C20−74.7 (4)
C10—N2—C7—C80.6 (3)C10i—C1—C19—C20108.2 (3)
C5—C6—C7—N2−0.6 (5)C24—C19—C20—C21−1.3 (5)
C11—C6—C7—N2179.9 (3)C1—C19—C20—C21178.7 (3)
C5—C6—C7—C8−178.7 (3)C19—C20—C21—C221.9 (6)
C11—C6—C7—C81.9 (5)C20—C21—C22—C23−1.4 (6)
N2—C7—C8—C9−0.7 (4)C20—C21—C22—O3170.2 (3)
C6—C7—C8—C9177.6 (3)C25—O3—C22—C21104.7 (5)
C7—C8—C9—C100.5 (4)C25—O3—C22—C23−83.6 (6)
C7—N2—C10—C1i178.3 (3)C21—C22—C23—C240.3 (6)
C7—N2—C10—C9−0.3 (3)O3—C22—C23—C24−171.1 (3)
C8—C9—C10—N2−0.1 (4)C22—C23—C24—C190.3 (6)
C8—C9—C10—C1i−178.7 (3)C20—C19—C24—C230.2 (5)
C5—C6—C11—C1663.8 (4)C1—C19—C24—C23−179.9 (3)
C7—C6—C11—C16−116.7 (3)C22—O3—C25—O410.6 (10)
C5—C6—C11—C12−115.8 (3)C22—O3—C25—C26−175.6 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1···N20.862.352.885 (3)121
N1—H1···N2i0.862.422.944 (3)120
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯N20.862.352.885 (3)121
N1—H1⋯N2i 0.862.422.944 (3)120

Symmetry code: (i) .

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Journal:  Acta Crystallogr C       Date:  2002-10-31       Impact factor: 1.172

5.  Ethyl 4-dodecyl-3,5-dimethyl-1H-pyrrole-2-carboxylate: intermolecular interactions in an amphiphilic pyrrole.

Authors:  Manuela Ramos Silva; Ana Matos Beja; Jose Antonio Paixão; Abilio J F N Sobral; Susana H Lopes; A M d'A Rocha Gonsalves
Journal:  Acta Crystallogr C       Date:  2002-08-31       Impact factor: 1.172

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  1 in total

1.  Crystal structure of 5,10,15-triphenyl-20-(4,4,5,5-tetra-methyl-1,3,2-dioxaborolan-2-yl)porphyrin.

Authors:  Mathias O Senge; Hans-Georg Eckhardt
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-09-06
  1 in total

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