| Literature DB >> 23476273 |
Micael D Miranda1, Manuela Ramos Silva, Teresa M R Maria, Avula Balakrishna, Abilio J F N Sobral.
Abstract
Mol-ecules of the title compound, C52H38N4O8, are located on an inversion center so that the asymmetric cell contains one half of the mol-ecule. The macrocycle exhibits a ruffled conformation with a maximum deviation of 0.16 Å for the 24 macrocycle atoms: the dihedral angle between adjacent five-membered rings is 5.13 (19)°. The benzene rings are rotated by 70.25 (19)° with respect to their adjacent protonated five-membered rings, and by 65.56 (19)° with respect to the unprotonated rings. The porphyrin conformation is supported by bifurcated N-H⋯(N,N) hydrogen bonds. The structure contained poorly resolved solvent mol-ecules in voids of volume 217 Å(3) per unit cell. The latter were treated using the SQUEEZE routine in PLATON [Spek (2009 ▶). Acta Cryst. D65, 148-155]. As the solvent could not be identified exactly, it was not included in the calculation of the overall formula weight, density and absorption coefficient.Entities:
Year: 2012 PMID: 23476273 PMCID: PMC3589037 DOI: 10.1107/S1600536812047332
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C52H38N4O8 | |
| Triclinic, | |
| Mo | |
| Cell parameters from 4592 reflections | |
| θ = 2.9–21.4° | |
| α = 113.862 (1)° | µ = 0.08 mm−1 |
| β = 97.771 (2)° | |
| γ = 98.060 (2)° | Plate, violet |
| 0.30 × 0.12 × 0.04 mm |
| Bruker APEX CCD area-detector diffractometer | 4566 independent reflections |
| Radiation source: fine-focus sealed tube | 2956 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 25.8°, θmin = 1.6° |
| Absorption correction: multi-scan ( | |
| 24062 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 4566 reflections | (Δ/σ)max = 0.040 |
| 291 parameters | Δρmax = 0.98 e Å−3 |
| 0 restraints | Δρmin = −0.51 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.7700 (3) | 0.90482 (18) | 0.36681 (17) | 0.0397 (6) | |
| H1 | 0.8553 | 0.9529 | 0.4212 | 0.048* | |
| N2 | 1.1829 (3) | 1.03171 (17) | 0.41002 (17) | 0.0400 (6) | |
| O1 | 0.8965 (4) | 0.7835 (2) | −0.19208 (16) | 0.0709 (7) | |
| O2 | 1.2299 (4) | 0.8442 (2) | −0.1891 (2) | 0.0810 (8) | |
| O3 | −0.1992 (4) | 0.5305 (2) | 0.3829 (3) | 0.0907 (9) | |
| O4 | −0.1461 (12) | 0.4164 (5) | 0.2427 (5) | 0.270 (4) | |
| C1 | 0.5249 (4) | 0.8381 (2) | 0.4526 (2) | 0.0404 (7) | |
| C2 | 0.5916 (4) | 0.8419 (2) | 0.3666 (2) | 0.0399 (7) | |
| C3 | 0.4952 (4) | 0.7749 (2) | 0.2613 (2) | 0.0477 (8) | |
| H3 | 0.3713 | 0.7240 | 0.2377 | 0.057* | |
| C4 | 0.6157 (5) | 0.7981 (3) | 0.2015 (2) | 0.0511 (8) | |
| H4 | 0.5881 | 0.7664 | 0.1297 | 0.061* | |
| C5 | 0.7918 (4) | 0.8795 (2) | 0.2676 (2) | 0.0418 (7) | |
| C6 | 0.9617 (4) | 0.9196 (2) | 0.2367 (2) | 0.0414 (7) | |
| C7 | 1.1447 (4) | 0.9906 (2) | 0.3043 (2) | 0.0419 (7) | |
| C8 | 1.3182 (5) | 1.0335 (2) | 0.2720 (2) | 0.0513 (8) | |
| H8 | 1.3306 | 1.0176 | 0.2044 | 0.062* | |
| C9 | 1.4573 (5) | 1.1004 (3) | 0.3576 (2) | 0.0511 (8) | |
| H9 | 1.5846 | 1.1402 | 0.3606 | 0.061* | |
| C10 | 1.3752 (4) | 1.1001 (2) | 0.4445 (2) | 0.0410 (7) | |
| C11 | 0.9478 (5) | 0.8834 (2) | 0.1239 (2) | 0.0453 (7) | |
| C12 | 1.0830 (5) | 0.8245 (3) | 0.0745 (2) | 0.0601 (9) | |
| H12 | 1.1829 | 0.8067 | 0.1125 | 0.072* | |
| C13 | 1.0738 (6) | 0.7915 (3) | −0.0297 (3) | 0.0672 (10) | |
| H13 | 1.1658 | 0.7517 | −0.0620 | 0.081* | |
| C14 | 0.9254 (5) | 0.8187 (3) | −0.0849 (2) | 0.0558 (9) | |
| C15 | 0.7864 (5) | 0.8749 (3) | −0.0391 (2) | 0.0579 (9) | |
| H15 | 0.6848 | 0.8913 | −0.0777 | 0.070* | |
| C16 | 0.7987 (5) | 0.9072 (3) | 0.0653 (2) | 0.0529 (8) | |
| H16 | 0.7046 | 0.9458 | 0.0969 | 0.063* | |
| C17 | 1.0572 (6) | 0.7993 (3) | −0.2359 (3) | 0.0599 (9) | |
| C18 | 0.9824 (6) | 0.7539 (3) | −0.3500 (3) | 0.0720 (11) | |
| H18A | 0.9996 | 0.8098 | −0.3718 | 0.108* | |
| H18B | 0.8375 | 0.7197 | −0.3682 | 0.108* | |
| H18C | 1.0620 | 0.7030 | −0.3834 | 0.108* | |
| C19 | 0.3332 (4) | 0.7556 (2) | 0.4305 (2) | 0.0411 (7) | |
| C20 | 0.1366 (5) | 0.7666 (3) | 0.3969 (3) | 0.0550 (8) | |
| H20 | 0.1215 | 0.8276 | 0.3888 | 0.066* | |
| C21 | −0.0373 (5) | 0.6893 (3) | 0.3751 (3) | 0.0620 (9) | |
| H21 | −0.1685 | 0.6967 | 0.3505 | 0.074* | |
| C22 | −0.0155 (5) | 0.6014 (3) | 0.3900 (3) | 0.0575 (9) | |
| C23 | 0.1759 (5) | 0.5883 (3) | 0.4238 (3) | 0.0658 (10) | |
| H23 | 0.1896 | 0.5280 | 0.4334 | 0.079* | |
| C24 | 0.3492 (5) | 0.6658 (3) | 0.4436 (3) | 0.0575 (9) | |
| H24 | 0.4804 | 0.6570 | 0.4664 | 0.069* | |
| C25 | −0.2590 (11) | 0.4459 (5) | 0.3054 (5) | 0.119 (2) | |
| C26 | −0.4600 (7) | 0.3784 (4) | 0.2982 (4) | 0.1021 (16) | |
| H26A | −0.4679 | 0.3064 | 0.2502 | 0.153* | |
| H26B | −0.5742 | 0.4039 | 0.2748 | 0.153* | |
| H26C | −0.4677 | 0.3812 | 0.3649 | 0.153* |
| N1 | 0.0341 (12) | 0.0479 (12) | 0.0322 (12) | −0.0020 (10) | 0.0051 (9) | 0.0165 (10) |
| N2 | 0.0370 (13) | 0.0456 (12) | 0.0342 (12) | −0.0015 (10) | 0.0070 (10) | 0.0176 (10) |
| O1 | 0.0544 (14) | 0.1086 (19) | 0.0343 (11) | −0.0056 (13) | 0.0089 (10) | 0.0232 (12) |
| O2 | 0.0619 (16) | 0.0996 (19) | 0.0612 (15) | −0.0139 (15) | 0.0127 (13) | 0.0248 (14) |
| O3 | 0.0685 (18) | 0.0697 (16) | 0.109 (2) | −0.0121 (14) | 0.0007 (16) | 0.0276 (16) |
| O4 | 0.299 (7) | 0.196 (5) | 0.175 (5) | −0.122 (5) | 0.121 (5) | −0.023 (4) |
| C1 | 0.0297 (14) | 0.0450 (14) | 0.0472 (16) | 0.0001 (12) | 0.0055 (12) | 0.0239 (12) |
| C2 | 0.0334 (14) | 0.0447 (14) | 0.0406 (15) | 0.0011 (12) | 0.0046 (11) | 0.0207 (12) |
| C3 | 0.0365 (15) | 0.0565 (17) | 0.0412 (16) | −0.0064 (13) | 0.0007 (12) | 0.0199 (14) |
| C4 | 0.0438 (17) | 0.0618 (18) | 0.0358 (15) | −0.0013 (14) | −0.0014 (13) | 0.0166 (14) |
| C5 | 0.0394 (15) | 0.0483 (15) | 0.0353 (14) | 0.0039 (13) | 0.0025 (12) | 0.0191 (12) |
| C6 | 0.0424 (15) | 0.0488 (15) | 0.0327 (14) | 0.0037 (13) | 0.0065 (12) | 0.0196 (12) |
| C7 | 0.0421 (16) | 0.0486 (15) | 0.0362 (14) | 0.0010 (13) | 0.0090 (12) | 0.0221 (12) |
| C8 | 0.0513 (18) | 0.0622 (18) | 0.0382 (15) | −0.0011 (15) | 0.0123 (13) | 0.0229 (14) |
| C9 | 0.0425 (16) | 0.0617 (18) | 0.0452 (16) | −0.0079 (14) | 0.0144 (13) | 0.0236 (14) |
| C10 | 0.0362 (15) | 0.0457 (14) | 0.0408 (15) | 0.0016 (12) | 0.0069 (12) | 0.0210 (12) |
| C11 | 0.0430 (16) | 0.0534 (16) | 0.0367 (15) | 0.0012 (13) | 0.0084 (12) | 0.0198 (13) |
| C12 | 0.0515 (19) | 0.085 (2) | 0.0425 (17) | 0.0186 (17) | 0.0065 (14) | 0.0258 (16) |
| C13 | 0.060 (2) | 0.089 (3) | 0.0459 (19) | 0.0179 (19) | 0.0127 (16) | 0.0211 (18) |
| C14 | 0.0491 (18) | 0.075 (2) | 0.0317 (15) | −0.0069 (16) | 0.0033 (13) | 0.0195 (15) |
| C15 | 0.0530 (19) | 0.079 (2) | 0.0444 (17) | 0.0081 (17) | 0.0056 (14) | 0.0324 (16) |
| C16 | 0.0493 (18) | 0.0665 (19) | 0.0443 (17) | 0.0124 (15) | 0.0132 (14) | 0.0243 (15) |
| C17 | 0.060 (2) | 0.067 (2) | 0.0448 (18) | 0.0034 (17) | 0.0142 (16) | 0.0192 (16) |
| C18 | 0.079 (3) | 0.086 (3) | 0.0442 (19) | 0.010 (2) | 0.0208 (18) | 0.0222 (18) |
| C19 | 0.0344 (15) | 0.0481 (15) | 0.0400 (15) | −0.0001 (12) | 0.0073 (11) | 0.0214 (12) |
| C20 | 0.0360 (16) | 0.0550 (17) | 0.078 (2) | 0.0039 (14) | 0.0074 (15) | 0.0366 (16) |
| C21 | 0.0350 (17) | 0.067 (2) | 0.085 (2) | 0.0023 (15) | 0.0050 (16) | 0.0390 (18) |
| C22 | 0.0392 (17) | 0.0559 (18) | 0.068 (2) | −0.0092 (15) | 0.0073 (15) | 0.0252 (16) |
| C23 | 0.053 (2) | 0.0539 (18) | 0.092 (3) | −0.0018 (16) | 0.0063 (18) | 0.0406 (18) |
| C24 | 0.0377 (17) | 0.0606 (19) | 0.078 (2) | 0.0025 (14) | 0.0046 (15) | 0.0387 (17) |
| C25 | 0.136 (5) | 0.106 (4) | 0.081 (3) | −0.023 (4) | 0.005 (3) | 0.027 (3) |
| C26 | 0.071 (3) | 0.084 (3) | 0.126 (4) | −0.032 (2) | 0.001 (3) | 0.042 (3) |
| N1—C5 | 1.368 (4) | C11—C16 | 1.380 (4) |
| N1—C2 | 1.374 (3) | C11—C12 | 1.380 (5) |
| N1—H1 | 0.8600 | C12—C13 | 1.378 (5) |
| N2—C7 | 1.372 (3) | C12—H12 | 0.9300 |
| N2—C10 | 1.376 (3) | C13—C14 | 1.376 (5) |
| O1—C17 | 1.348 (4) | C13—H13 | 0.9300 |
| O1—C14 | 1.402 (4) | C14—C15 | 1.364 (5) |
| O2—C17 | 1.187 (4) | C15—C16 | 1.379 (4) |
| O3—C25 | 1.226 (6) | C15—H15 | 0.9300 |
| O3—C22 | 1.425 (4) | C16—H16 | 0.9300 |
| O4—C25 | 1.235 (8) | C17—C18 | 1.490 (5) |
| C1—C2 | 1.395 (4) | C18—H18A | 0.9600 |
| C1—C10i | 1.394 (4) | C18—H18B | 0.9600 |
| C1—C19 | 1.497 (4) | C18—H18C | 0.9600 |
| C2—C3 | 1.425 (4) | C19—C24 | 1.370 (4) |
| C3—C4 | 1.356 (4) | C19—C20 | 1.379 (4) |
| C3—H3 | 0.9300 | C20—C21 | 1.373 (4) |
| C4—C5 | 1.424 (4) | C20—H20 | 0.9300 |
| C4—H4 | 0.9300 | C21—C22 | 1.365 (5) |
| C5—C6 | 1.396 (4) | C21—H21 | 0.9300 |
| C6—C7 | 1.406 (4) | C22—C23 | 1.360 (5) |
| C6—C11 | 1.488 (4) | C23—C24 | 1.378 (4) |
| C7—C8 | 1.445 (4) | C23—H23 | 0.9300 |
| C8—C9 | 1.333 (4) | C24—H24 | 0.9300 |
| C8—H8 | 0.9300 | C25—C26 | 1.489 (7) |
| C9—C10 | 1.439 (4) | C26—H26A | 0.9600 |
| C9—H9 | 0.9300 | C26—H26B | 0.9600 |
| C10—C1i | 1.394 (4) | C26—H26C | 0.9600 |
| C5—N1—C2 | 109.8 (2) | C15—C14—C13 | 121.4 (3) |
| C5—N1—H1 | 125.1 | C15—C14—O1 | 115.9 (3) |
| C2—N1—H1 | 125.1 | C13—C14—O1 | 122.5 (3) |
| C7—N2—C10 | 105.8 (2) | C14—C15—C16 | 119.0 (3) |
| C17—O1—C14 | 121.0 (3) | C14—C15—H15 | 120.5 |
| C25—O3—C22 | 118.6 (5) | C16—C15—H15 | 120.5 |
| C2—C1—C10i | 126.2 (3) | C11—C16—C15 | 121.4 (3) |
| C2—C1—C19 | 116.0 (2) | C11—C16—H16 | 119.3 |
| C10i—C1—C19 | 117.6 (3) | C15—C16—H16 | 119.3 |
| N1—C2—C1 | 126.8 (2) | O2—C17—O1 | 124.2 (3) |
| N1—C2—C3 | 106.9 (2) | O2—C17—C18 | 126.3 (3) |
| C1—C2—C3 | 126.2 (3) | O1—C17—C18 | 109.5 (3) |
| C4—C3—C2 | 108.1 (2) | C17—C18—H18A | 109.5 |
| C4—C3—H3 | 126.0 | C17—C18—H18B | 109.5 |
| C2—C3—H3 | 126.0 | H18A—C18—H18B | 109.5 |
| C3—C4—C5 | 108.2 (3) | C17—C18—H18C | 109.5 |
| C3—C4—H4 | 125.9 | H18A—C18—H18C | 109.5 |
| C5—C4—H4 | 125.9 | H18B—C18—H18C | 109.5 |
| N1—C5—C6 | 126.7 (2) | C24—C19—C20 | 117.8 (3) |
| N1—C5—C4 | 107.0 (3) | C24—C19—C1 | 120.2 (3) |
| C6—C5—C4 | 126.2 (3) | C20—C19—C1 | 121.9 (3) |
| C5—C6—C7 | 124.7 (3) | C21—C20—C19 | 121.2 (3) |
| C5—C6—C11 | 117.3 (2) | C21—C20—H20 | 119.4 |
| C7—C6—C11 | 118.0 (3) | C19—C20—H20 | 119.4 |
| N2—C7—C6 | 125.5 (3) | C22—C21—C20 | 119.3 (3) |
| N2—C7—C8 | 110.0 (2) | C22—C21—H21 | 120.4 |
| C6—C7—C8 | 124.5 (3) | C20—C21—H21 | 120.4 |
| C9—C8—C7 | 106.8 (3) | C21—C22—C23 | 121.0 (3) |
| C9—C8—H8 | 126.6 | C21—C22—O3 | 118.3 (3) |
| C7—C8—H8 | 126.6 | C23—C22—O3 | 120.1 (3) |
| C8—C9—C10 | 107.8 (3) | C22—C23—C24 | 119.0 (3) |
| C8—C9—H9 | 126.1 | C22—C23—H23 | 120.5 |
| C10—C9—H9 | 126.1 | C24—C23—H23 | 120.5 |
| N2—C10—C1i | 125.9 (3) | C23—C24—C19 | 121.6 (3) |
| N2—C10—C9 | 109.6 (2) | C23—C24—H24 | 119.2 |
| C1i—C10—C9 | 124.6 (3) | C19—C24—H24 | 119.2 |
| C16—C11—C12 | 117.9 (3) | O3—C25—O4 | 120.1 (6) |
| C16—C11—C6 | 121.1 (3) | O3—C25—C26 | 116.5 (6) |
| C12—C11—C6 | 121.0 (3) | O4—C25—C26 | 123.1 (5) |
| C13—C12—C11 | 121.7 (3) | C25—C26—H26A | 109.5 |
| C13—C12—H12 | 119.1 | C25—C26—H26B | 109.5 |
| C11—C12—H12 | 119.1 | H26A—C26—H26B | 109.5 |
| C14—C13—C12 | 118.5 (3) | C25—C26—H26C | 109.5 |
| C14—C13—H13 | 120.7 | H26A—C26—H26C | 109.5 |
| C12—C13—H13 | 120.7 | H26B—C26—H26C | 109.5 |
| C5—N1—C2—C1 | 174.5 (3) | C7—C6—C11—C12 | 63.6 (4) |
| C5—N1—C2—C3 | −1.0 (3) | C16—C11—C12—C13 | 1.1 (5) |
| C10i—C1—C2—N1 | 1.9 (5) | C6—C11—C12—C13 | −179.2 (3) |
| C19—C1—C2—N1 | −175.0 (3) | C11—C12—C13—C14 | 0.1 (6) |
| C10i—C1—C2—C3 | 176.6 (3) | C12—C13—C14—C15 | −1.5 (5) |
| C19—C1—C2—C3 | −0.3 (4) | C12—C13—C14—O1 | −176.2 (3) |
| N1—C2—C3—C4 | 0.2 (3) | C17—O1—C14—C15 | 131.0 (4) |
| C1—C2—C3—C4 | −175.3 (3) | C17—O1—C14—C13 | −54.0 (5) |
| C2—C3—C4—C5 | 0.6 (4) | C13—C14—C15—C16 | 1.5 (5) |
| C2—N1—C5—C6 | −174.2 (3) | O1—C14—C15—C16 | 176.6 (3) |
| C2—N1—C5—C4 | 1.4 (3) | C12—C11—C16—C15 | −1.1 (5) |
| C3—C4—C5—N1 | −1.2 (4) | C6—C11—C16—C15 | 179.3 (3) |
| C3—C4—C5—C6 | 174.4 (3) | C14—C15—C16—C11 | −0.2 (5) |
| N1—C5—C6—C7 | 2.8 (5) | C14—O1—C17—O2 | −1.2 (6) |
| C4—C5—C6—C7 | −171.9 (3) | C14—O1—C17—C18 | 179.9 (3) |
| N1—C5—C6—C11 | −177.8 (3) | C2—C1—C19—C24 | 105.4 (3) |
| C4—C5—C6—C11 | 7.5 (5) | C10i—C1—C19—C24 | −71.8 (4) |
| C10—N2—C7—C6 | −177.7 (3) | C2—C1—C19—C20 | −74.7 (4) |
| C10—N2—C7—C8 | 0.6 (3) | C10i—C1—C19—C20 | 108.2 (3) |
| C5—C6—C7—N2 | −0.6 (5) | C24—C19—C20—C21 | −1.3 (5) |
| C11—C6—C7—N2 | 179.9 (3) | C1—C19—C20—C21 | 178.7 (3) |
| C5—C6—C7—C8 | −178.7 (3) | C19—C20—C21—C22 | 1.9 (6) |
| C11—C6—C7—C8 | 1.9 (5) | C20—C21—C22—C23 | −1.4 (6) |
| N2—C7—C8—C9 | −0.7 (4) | C20—C21—C22—O3 | 170.2 (3) |
| C6—C7—C8—C9 | 177.6 (3) | C25—O3—C22—C21 | 104.7 (5) |
| C7—C8—C9—C10 | 0.5 (4) | C25—O3—C22—C23 | −83.6 (6) |
| C7—N2—C10—C1i | 178.3 (3) | C21—C22—C23—C24 | 0.3 (6) |
| C7—N2—C10—C9 | −0.3 (3) | O3—C22—C23—C24 | −171.1 (3) |
| C8—C9—C10—N2 | −0.1 (4) | C22—C23—C24—C19 | 0.3 (6) |
| C8—C9—C10—C1i | −178.7 (3) | C20—C19—C24—C23 | 0.2 (5) |
| C5—C6—C11—C16 | 63.8 (4) | C1—C19—C24—C23 | −179.9 (3) |
| C7—C6—C11—C16 | −116.7 (3) | C22—O3—C25—O4 | 10.6 (10) |
| C5—C6—C11—C12 | −115.8 (3) | C22—O3—C25—C26 | −175.6 (4) |
| H··· | ||||
| N1—H1···N2 | 0.86 | 2.35 | 2.885 (3) | 121 |
| N1—H1···N2i | 0.86 | 2.42 | 2.944 (3) | 120 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1⋯N2 | 0.86 | 2.35 | 2.885 (3) | 121 |
| N1—H1⋯N2i | 0.86 | 2.42 | 2.944 (3) | 120 |
Symmetry code: (i) .