Literature DB >> 23476261

N-(2-Oxo-2H-chromen-3-yl)cyclo-hexane-carboxamide.

Maria J Matos1, Lourdes Santana, Eugenio Uriarte.   

Abstract

In the title compound, C16H17NO3, the n class="Chemical">coumarin moiety is essentially planar [maximum deviation from the mean plane formed by the C and O atoms of the coumarin = 0.0183 (12) Å] and that the cyclo-hexane ring adopts the usual chair conformation. The dihedral angle between the mean plane of the coumarin residue and the plane of the amide residue (defined as the N, C and O atoms) is 18.9 (2)°. There are two intra-molecular hydrogen bonds involving the amide group. In one, the N atom acts as donor to the ketonic O atom and in the other, the amide O atom acts as acceptor of a C-H group of the coumarin. In the crystal, mol-ecules are linked into inversion dimers by pairs of N-H⋯O contacts and these dimers are linked into pairs by weak C-H⋯O hydrogen bonds. The combination of these inter-actions creates a chain of rings which runs parallel to [2-10]. C-H⋯π and π-π [centroid-centroid distance = 3.8654 (10) Å] inter-actions are also observed.

Entities:  

Year:  2012        PMID: 23476261      PMCID: PMC3589025          DOI: 10.1107/S1600536812047903

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound, see: Viña, Matos, Ferino et al. (2012 ▶); Viña, Matos, Yáñez et al. (2012 ▶). For the biological activity of coumarin derivatives, see: Borges et al. (2009 ▶); Matos et al. (2009 ▶, 2010 ▶); Matos, Santana et al. (2011 ▶); Matos, Terán et al. (2011 ▶). For graph-set analysis of n class="Chemical">hydrogen bonds, see: Bernstein et al., (1995 ▶)

Experimental

Crystal data

C16H17NO3 M = 271.31 Triclinic, a = 6.4486 (6) Å b = 9.6324 (11) Å c = 11.0837 (11) Å α = 83.061 (6)° β = 89.134 (5)° γ = 73.987 (5)° V = 656.79 (12) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.48 × 0.45 × 0.09 mm

Data collection

Bruker X8 APEXII KappaCCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2012 ▶) T min = 0.910, T max = 1.000 9698 measured reflections 2487 independent reflections 1834 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.113 S = 1.06 2487 reflections 185 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2012 ▶); cell refinement: SAINT (Bruker, 2012 ▶); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812047903/go2076sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812047903/go2076Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812047903/go2076Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H17NO3F(000) = 288
Mr = 271.31F(000) = 288
Triclinic, P1Dx = 1.372 Mg m3
Hall symbol: -P 1Melting point: 100 K
a = 6.4486 (6) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.6324 (11) ÅCell parameters from 1680 reflections
c = 11.0837 (11) Åθ = 2.7–26.3°
α = 83.061 (6)°µ = 0.10 mm1
β = 89.134 (5)°T = 100 K
γ = 73.987 (5)°Plate, colourless
V = 656.79 (12) Å30.48 × 0.45 × 0.09 mm
Z = 2
Bruker X8 APEXII KappaCCD diffractometer2487 independent reflections
Radiation source: fine-focus sealed tube1834 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.044
ω and phi scansθmax = 25.7°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2012)h = −7→7
Tmin = 0.910, Tmax = 1.000k = −11→11
9698 measured reflectionsl = 0→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.113H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0577P)2] where P = (Fo2 + 2Fc2)/3
2487 reflections(Δ/σ)max < 0.001
185 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.25 e Å3
Experimental. 1H NMR (300 MHz, CDCl3): δ 1.27–1.95 (10H, m, 2H-2, 2H-3, 2H-4, 2H-5, 2H-6), 2.33–2.40 (1H, m H-1), 7.25–7.29 (2H, m, H-6, H-8), 7.33 (1H, dd, H-7, J=8.5, J=1.5), 7.46 (1H, dd, H-5, J=8.5, J=1.6), 8.12 (1H, s, H-4), 8.70 (1H, s, –NH); 13C NMR (75.47?MHz, CDCl3): δ 25.6, 25.7, 29.7, 43.0, 116.6, 120.2, 123.4, 124.3, 125.4, 128.0, 129.8, 150.1, 159.2, 175.9; DEPT: 25.6, 25.7, 29.7, 43.0, 116.6, 120.2, 124.3, 125.4, 128.0; MS m/z 272 ([M + 1]+, 16), 271 (M+, 100). Anal. Calcd for C16H17NO3: C, 70.83; H, 6.32. Found: C, 70.85; H, 6.35.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.24398 (15)0.35744 (12)−0.13872 (9)0.0151 (3)
C20.2812 (2)0.23542 (18)−0.05704 (14)0.0135 (4)
C30.0969 (2)0.20233 (18)0.00628 (14)0.0124 (4)
C4−0.1049 (2)0.28990 (18)−0.01851 (13)0.0136 (4)
H4−0.22450.26680.02160.016*
C5−0.1385 (2)0.41752 (18)−0.10531 (13)0.0128 (4)
C6−0.3423 (2)0.51517 (19)−0.13683 (14)0.0157 (4)
H6−0.46790.4963−0.10070.019*
C7−0.3625 (3)0.63721 (19)−0.21886 (14)0.0177 (4)
H7−0.50090.7028−0.23810.021*
C8−0.1796 (3)0.66474 (19)−0.27396 (14)0.0185 (4)
H8−0.19380.7492−0.33070.022*
C90.0224 (3)0.56983 (18)−0.24641 (14)0.0165 (4)
H90.14730.5875−0.28430.02*
C100.0385 (2)0.44942 (18)−0.16300 (14)0.0135 (4)
O110.46651 (16)0.16189 (12)−0.04220 (10)0.0183 (3)
N120.1571 (2)0.07624 (16)0.08823 (12)0.0147 (3)
H120.285 (3)0.019 (2)0.0806 (15)0.028 (5)*
C130.0426 (2)0.03698 (18)0.18526 (14)0.0139 (4)
O14−0.13975 (16)0.10822 (13)0.20623 (10)0.0219 (3)
C150.1649 (2)−0.09965 (18)0.26441 (14)0.0131 (4)
H150.24−0.17220.20950.016*
C160.0122 (2)−0.16661 (18)0.34364 (14)0.0160 (4)
H16A−0.0669−0.09590.39770.019*
H16B−0.0948−0.18820.29110.019*
C170.1367 (2)−0.30629 (19)0.42045 (15)0.0188 (4)
H17A0.0353−0.34480.47350.023*
H17B0.2042−0.38020.36640.023*
C180.3111 (3)−0.27969 (19)0.49876 (15)0.0201 (4)
H18A0.2425−0.21480.55950.024*
H18B0.3954−0.37320.54310.024*
C190.4615 (3)−0.21078 (19)0.42127 (15)0.0212 (4)
H19A0.5427−0.28070.36720.025*
H19B0.567−0.18890.47480.025*
C200.3377 (2)−0.07084 (19)0.34427 (14)0.0174 (4)
H20A0.4394−0.03170.2920.021*
H20B0.26810.00280.39810.021*
U11U22U33U12U13U23
O10.0132 (6)0.0145 (7)0.0169 (6)−0.0041 (5)0.0012 (5)0.0019 (5)
C20.0175 (8)0.0115 (10)0.0127 (9)−0.0048 (7)0.0005 (7)−0.0039 (7)
C30.0168 (8)0.0117 (10)0.0096 (8)−0.0053 (7)0.0014 (6)−0.0015 (7)
C40.0145 (8)0.0160 (10)0.0117 (9)−0.0058 (7)0.0013 (7)−0.0037 (8)
C50.0170 (8)0.0126 (10)0.0098 (9)−0.0048 (7)0.0007 (7)−0.0039 (7)
C60.0153 (8)0.0196 (11)0.0125 (9)−0.0044 (7)0.0004 (7)−0.0043 (8)
C70.0199 (9)0.0175 (10)0.0133 (9)0.0000 (7)−0.0041 (7)−0.0037 (8)
C80.0290 (9)0.0128 (10)0.0137 (9)−0.0060 (8)−0.0040 (7)−0.0007 (8)
C90.0207 (9)0.0178 (10)0.0138 (9)−0.0099 (7)0.0015 (7)−0.0022 (8)
C100.0150 (8)0.0136 (10)0.0117 (9)−0.0029 (7)−0.0016 (6)−0.0031 (7)
O110.0129 (6)0.0174 (7)0.0229 (7)−0.0024 (5)0.0014 (5)−0.0005 (5)
N120.0126 (7)0.0145 (8)0.0149 (8)−0.0011 (6)0.0024 (6)0.0005 (6)
C130.0157 (8)0.0161 (10)0.0123 (9)−0.0079 (7)0.0021 (7)−0.0036 (7)
O140.0162 (6)0.0218 (8)0.0230 (7)−0.0005 (5)0.0046 (5)0.0035 (6)
C150.0161 (8)0.0118 (10)0.0112 (8)−0.0036 (7)0.0008 (6)−0.0014 (7)
C160.0182 (8)0.0169 (10)0.0148 (9)−0.0080 (7)0.0019 (7)−0.0019 (8)
C170.0241 (9)0.0178 (11)0.0156 (9)−0.0083 (7)0.0029 (7)−0.0011 (8)
C180.0248 (9)0.0174 (11)0.0165 (9)−0.0041 (8)−0.0006 (7)0.0003 (8)
C190.0213 (9)0.0221 (11)0.0194 (10)−0.0067 (8)−0.0049 (7)0.0029 (8)
C200.0192 (8)0.0172 (10)0.0165 (9)−0.0075 (7)−0.0011 (7)0.0013 (8)
O1—C21.3610 (19)C13—O141.2220 (17)
O1—C101.3852 (17)C13—C151.514 (2)
C2—O111.2115 (17)C15—C161.531 (2)
C2—C31.462 (2)C15—C201.537 (2)
C3—C41.3523 (19)C15—H151
C3—N121.391 (2)C16—C171.526 (2)
C4—C51.434 (2)C16—H16A0.99
C4—H40.95C16—H16B0.99
C5—C101.389 (2)C17—C181.525 (2)
C5—C61.410 (2)C17—H17A0.99
C6—C71.373 (2)C17—H17B0.99
C6—H60.95C18—C191.521 (2)
C7—C81.395 (2)C18—H18A0.99
C7—H70.95C18—H18B0.99
C8—C91.383 (2)C19—C201.527 (2)
C8—H80.95C19—H19A0.99
C9—C101.374 (2)C19—H19B0.99
C9—H90.95C20—H20A0.99
N12—C131.370 (2)C20—H20B0.99
N12—H120.867 (17)
C2—O1—C10121.98 (12)C13—C15—C20111.68 (14)
O11—C2—O1117.05 (14)C16—C15—C20110.15 (13)
O11—C2—C3124.73 (15)C13—C15—H15107.8
O1—C2—C3118.23 (13)C16—C15—H15107.8
C4—C3—N12127.29 (15)C20—C15—H15107.8
C4—C3—C2120.24 (15)C17—C16—C15111.00 (12)
N12—C3—C2112.46 (13)C17—C16—H16A109.4
C3—C4—C5120.11 (15)C15—C16—H16A109.4
C3—C4—H4119.9C17—C16—H16B109.4
C5—C4—H4119.9C15—C16—H16B109.4
C10—C5—C6116.77 (15)H16A—C16—H16B108
C10—C5—C4119.08 (14)C18—C17—C16111.32 (14)
C6—C5—C4124.15 (15)C18—C17—H17A109.4
C7—C6—C5121.11 (15)C16—C17—H17A109.4
C7—C6—H6119.4C18—C17—H17B109.4
C5—C6—H6119.4C16—C17—H17B109.4
C6—C7—C8119.91 (15)H17A—C17—H17B108
C6—C7—H7120C19—C18—C17111.01 (14)
C8—C7—H7120C19—C18—H18A109.4
C9—C8—C7120.39 (16)C17—C18—H18A109.4
C9—C8—H8119.8C19—C18—H18B109.4
C7—C8—H8119.8C17—C18—H18B109.4
C10—C9—C8118.56 (15)H18A—C18—H18B108
C10—C9—H9120.7C18—C19—C20111.67 (14)
C8—C9—H9120.7C18—C19—H19A109.3
C9—C10—O1116.42 (14)C20—C19—H19A109.3
C9—C10—C5123.25 (14)C18—C19—H19B109.3
O1—C10—C5120.33 (15)C20—C19—H19B109.3
C13—N12—C3127.25 (13)H19A—C19—H19B107.9
C13—N12—H12115.9 (12)C19—C20—C15110.64 (14)
C3—N12—H12116.6 (12)C19—C20—H20A109.5
O14—C13—N12122.46 (15)C15—C20—H20A109.5
O14—C13—C15123.73 (14)C19—C20—H20B109.5
N12—C13—C15113.80 (13)C15—C20—H20B109.5
C13—C15—C16111.49 (12)H20A—C20—H20B108.1
C10—O1—C2—O11179.93 (13)C4—C5—C10—C9−179.32 (15)
C10—O1—C2—C3−0.1 (2)C6—C5—C10—O1−178.81 (13)
O11—C2—C3—C4−178.64 (15)C4—C5—C10—O11.3 (2)
O1—C2—C3—C41.4 (2)C4—C3—N12—C13−21.3 (3)
O11—C2—C3—N120.8 (2)C2—C3—N12—C13159.30 (15)
O1—C2—C3—N12−179.14 (13)C3—N12—C13—O145.0 (3)
N12—C3—C4—C5179.33 (14)C3—N12—C13—C15−173.68 (14)
C2—C3—C4—C5−1.3 (2)O14—C13—C15—C1620.2 (2)
C3—C4—C5—C100.0 (2)N12—C13—C15—C16−161.13 (14)
C3—C4—C5—C6−179.90 (14)O14—C13—C15—C20−103.50 (18)
C10—C5—C6—C7−1.3 (2)N12—C13—C15—C2075.17 (17)
C4—C5—C6—C7178.56 (15)C13—C15—C16—C17178.50 (13)
C5—C6—C7—C81.1 (2)C20—C15—C16—C17−56.93 (18)
C6—C7—C8—C90.0 (2)C15—C16—C17—C1856.43 (18)
C7—C8—C9—C10−0.7 (2)C16—C17—C18—C19−55.19 (18)
C8—C9—C10—O1179.81 (13)C17—C18—C19—C2055.31 (19)
C8—C9—C10—C50.4 (2)C18—C19—C20—C15−56.28 (18)
C2—O1—C10—C9179.36 (13)C13—C15—C20—C19−178.89 (13)
C2—O1—C10—C5−1.2 (2)C16—C15—C20—C1956.65 (17)
C6—C5—C10—C90.6 (2)
D—H···AD—HH···AD···AD—H···A
N12—H12···O110.87 (2)2.346 (19)2.6990 (18)104.7 (14)
N12—H12···O11i0.87 (2)2.098 (18)2.9303 (16)160.8 (17)
C4—H4···O140.952.372.9094 (19)115
C7—H7···O14ii0.952.573.473 (2)158
C16—H16B···Cg1iii0.992.813.5732 (17)134
C17—H17B···Cg2iii0.992.703.5876 (19)149
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the O1/C2–C5/C10 and C5–C10 rings, respectively.

D—H⋯A D—HH⋯A DA D—H⋯A
N12—H12⋯O110.87 (2)2.346 (19)2.6990 (18)104.7 (14)
N12—H12⋯O11i 0.87 (2)2.098 (18)2.9303 (16)160.8 (17)
C4—H4⋯O140.952.372.9094 (19)115
C7—H7⋯O14ii 0.952.573.473 (2)158
C16—H16BCg1iii 0.992.813.5732 (17)134
C17—H17BCg2iii 0.992.703.5876 (19)149

Symmetry codes: (i) ; (ii) ; (iii) .

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