| Literature DB >> 23476258 |
Kaliyaperumal Thanigaimani1, Nuridayanti Che Khalib, Suhana Arshad, Ibrahim Abdul Razak.
Abstract
The benzoic acid mol-ecule of the title compound, C4H5ClN4·C7H6O2, is approximately planar, with a dihedral angle of 1.28 (9)° between the carb-oxy group and the benzene ring. In the crystal, two acid and two base mol-ecules are linked through N-H⋯O and O-H⋯N hydrogen bonds, forming a centrosymmetric 2 + 2 unit with R2(2)(8) and R4(2)(8) motifs. These units are further linked through a pair of N-H⋯N hydrogen bonds into a tape structure along [1-20]. The crystal structure also features weak π-π [centroid-centroid distance = 3.5984 (11) Å] and C-H⋯π inter-actions.Entities:
Year: 2012 PMID: 23476258 PMCID: PMC3589022 DOI: 10.1107/S160053681204768X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C4H5ClN4·C7H6O2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 5646 reflections |
| θ = 3.0–30.0° | |
| µ = 0.32 mm−1 | |
| β = 95.493 (4)° | Block, colourless |
| 0.36 × 0.30 × 0.16 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 2097 independent reflections |
| Radiation source: fine-focus sealed tube | 1891 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 25.0°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 7539 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2097 reflections | (Δ/σ)max < 0.001 |
| 183 parameters | Δρmax = 0.25 e Å−3 |
| 1 restraint | Δρmin = −0.24 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | −0.05557 (4) | 0.64565 (9) | 0.367228 (16) | 0.03348 (18) | |
| O1 | 0.43197 (13) | 0.5175 (2) | 0.61239 (5) | 0.0312 (3) | |
| O2 | 0.52962 (16) | 0.1720 (2) | 0.59015 (5) | 0.0372 (3) | |
| N1 | 0.07033 (15) | 0.7543 (3) | 0.46563 (5) | 0.0274 (4) | |
| N2 | 0.27154 (14) | 0.5362 (3) | 0.51588 (5) | 0.0266 (4) | |
| N3 | 0.16941 (19) | 0.8669 (3) | 0.55310 (6) | 0.0313 (4) | |
| N4 | 0.37676 (16) | 0.2112 (3) | 0.47835 (7) | 0.0325 (4) | |
| C1 | 0.07703 (17) | 0.5991 (3) | 0.42471 (7) | 0.0272 (4) | |
| C2 | 0.17389 (17) | 0.4136 (4) | 0.42399 (7) | 0.0287 (4) | |
| H2A | 0.1734 | 0.3108 | 0.3929 | 0.034* | |
| C3 | 0.27541 (17) | 0.3846 (3) | 0.47284 (7) | 0.0272 (4) | |
| C4 | 0.17144 (17) | 0.7163 (3) | 0.51057 (6) | 0.0265 (4) | |
| C5 | 0.71603 (19) | 0.1587 (3) | 0.69200 (7) | 0.0264 (4) | |
| H5A | 0.7220 | 0.0302 | 0.6672 | 0.032* | |
| C6 | 0.80722 (19) | 0.1626 (3) | 0.74236 (7) | 0.0276 (4) | |
| H6A | 0.8760 | 0.0372 | 0.7519 | 0.033* | |
| C7 | 0.79790 (17) | 0.3497 (3) | 0.77877 (7) | 0.0251 (4) | |
| H7A | 0.8608 | 0.3526 | 0.8132 | 0.030* | |
| C8 | 0.69723 (17) | 0.5321 (3) | 0.76507 (7) | 0.0258 (4) | |
| H8A | 0.6908 | 0.6594 | 0.7902 | 0.031* | |
| C9 | 0.60544 (17) | 0.5293 (3) | 0.71455 (7) | 0.0241 (4) | |
| H9A | 0.5361 | 0.6542 | 0.7052 | 0.029* | |
| C10 | 0.61545 (17) | 0.3430 (3) | 0.67768 (6) | 0.0214 (4) | |
| C11 | 0.52134 (18) | 0.3366 (3) | 0.62273 (7) | 0.0249 (4) | |
| H2N3 | 0.233 (3) | 0.851 (4) | 0.5785 (10) | 0.039 (6)* | |
| H2N4 | 0.432 (2) | 0.196 (4) | 0.5105 (10) | 0.045 (6)* | |
| H1N4 | 0.388 (2) | 0.113 (4) | 0.4508 (9) | 0.033 (5)* | |
| H1N3 | 0.109 (2) | 0.983 (4) | 0.5499 (9) | 0.037 (6)* | |
| H1O1 | 0.386 (3) | 0.508 (7) | 0.5789 (7) | 0.113 (13)* |
| Cl1 | 0.0286 (3) | 0.0508 (4) | 0.0183 (2) | −0.00328 (18) | −0.01233 (16) | 0.00310 (18) |
| O1 | 0.0260 (6) | 0.0437 (8) | 0.0220 (6) | 0.0042 (6) | −0.0080 (5) | 0.0035 (6) |
| O2 | 0.0521 (8) | 0.0321 (8) | 0.0240 (6) | −0.0019 (6) | −0.0147 (6) | −0.0010 (6) |
| N1 | 0.0230 (6) | 0.0382 (9) | 0.0190 (7) | −0.0093 (6) | −0.0076 (5) | 0.0077 (7) |
| N2 | 0.0203 (6) | 0.0395 (9) | 0.0183 (7) | −0.0085 (6) | −0.0059 (5) | 0.0068 (6) |
| N3 | 0.0318 (8) | 0.0370 (10) | 0.0217 (8) | −0.0044 (7) | −0.0144 (6) | 0.0040 (7) |
| N4 | 0.0262 (7) | 0.0503 (11) | 0.0195 (7) | −0.0020 (7) | −0.0058 (6) | 0.0009 (7) |
| C1 | 0.0202 (7) | 0.0439 (11) | 0.0159 (8) | −0.0113 (7) | −0.0071 (6) | 0.0080 (7) |
| C2 | 0.0218 (8) | 0.0457 (12) | 0.0177 (8) | −0.0074 (8) | −0.0032 (6) | 0.0029 (8) |
| C3 | 0.0178 (7) | 0.0447 (12) | 0.0181 (8) | −0.0098 (7) | −0.0029 (6) | 0.0071 (7) |
| C4 | 0.0214 (7) | 0.0387 (11) | 0.0178 (8) | −0.0124 (7) | −0.0062 (6) | 0.0083 (7) |
| C5 | 0.0325 (9) | 0.0257 (10) | 0.0201 (8) | 0.0009 (7) | −0.0015 (7) | −0.0003 (7) |
| C6 | 0.0283 (8) | 0.0292 (10) | 0.0244 (8) | 0.0070 (7) | −0.0030 (7) | 0.0050 (7) |
| C7 | 0.0220 (8) | 0.0322 (10) | 0.0196 (8) | −0.0019 (7) | −0.0053 (6) | 0.0024 (7) |
| C8 | 0.0249 (8) | 0.0268 (10) | 0.0244 (8) | −0.0006 (7) | −0.0038 (6) | −0.0034 (7) |
| C9 | 0.0199 (7) | 0.0248 (10) | 0.0267 (8) | 0.0005 (7) | −0.0027 (6) | 0.0028 (7) |
| C10 | 0.0192 (7) | 0.0263 (9) | 0.0181 (8) | −0.0046 (6) | −0.0014 (6) | 0.0039 (6) |
| C11 | 0.0243 (8) | 0.0291 (10) | 0.0205 (8) | −0.0063 (7) | −0.0023 (6) | 0.0043 (7) |
| Cl1—C1 | 1.7395 (15) | C2—C3 | 1.414 (2) |
| O1—C11 | 1.306 (2) | C2—H2A | 0.9500 |
| O1—H1O1 | 0.866 (10) | C5—C6 | 1.386 (2) |
| O2—C11 | 1.229 (2) | C5—C10 | 1.395 (2) |
| N1—C1 | 1.328 (2) | C5—H5A | 0.9500 |
| N1—C4 | 1.348 (2) | C6—C7 | 1.387 (3) |
| N2—C4 | 1.350 (2) | C6—H6A | 0.9500 |
| N2—C3 | 1.351 (2) | C7—C8 | 1.384 (2) |
| N3—C4 | 1.336 (2) | C7—H7A | 0.9500 |
| N3—H2N3 | 0.79 (2) | C8—C9 | 1.392 (2) |
| N3—H1N3 | 0.85 (2) | C8—H8A | 0.9500 |
| N4—C3 | 1.328 (3) | C9—C10 | 1.391 (2) |
| N4—H2N4 | 0.88 (2) | C9—H9A | 0.9500 |
| N4—H1N4 | 0.88 (2) | C10—C11 | 1.490 (2) |
| C1—C2 | 1.358 (3) | ||
| C11—O1—H1O1 | 110 (2) | C6—C5—C10 | 120.18 (16) |
| C1—N1—C4 | 114.40 (16) | C6—C5—H5A | 119.9 |
| C4—N2—C3 | 118.60 (14) | C10—C5—H5A | 119.9 |
| C4—N3—H2N3 | 117.1 (16) | C5—C6—C7 | 119.92 (16) |
| C4—N3—H1N3 | 119.2 (15) | C5—C6—H6A | 120.0 |
| H2N3—N3—H1N3 | 123 (2) | C7—C6—H6A | 120.0 |
| C3—N4—H2N4 | 118.1 (15) | C8—C7—C6 | 120.20 (15) |
| C3—N4—H1N4 | 121.4 (13) | C8—C7—H7A | 119.9 |
| H2N4—N4—H1N4 | 121 (2) | C6—C7—H7A | 119.9 |
| N1—C1—C2 | 126.90 (15) | C7—C8—C9 | 120.15 (16) |
| N1—C1—Cl1 | 114.35 (13) | C7—C8—H8A | 119.9 |
| C2—C1—Cl1 | 118.76 (14) | C9—C8—H8A | 119.9 |
| C1—C2—C3 | 115.25 (17) | C10—C9—C8 | 119.83 (15) |
| C1—C2—H2A | 122.4 | C10—C9—H9A | 120.1 |
| C3—C2—H2A | 122.4 | C8—C9—H9A | 120.1 |
| N4—C3—N2 | 117.76 (15) | C9—C10—C5 | 119.71 (15) |
| N4—C3—C2 | 122.23 (17) | C9—C10—C11 | 121.29 (15) |
| N2—C3—C2 | 120.01 (17) | C5—C10—C11 | 118.99 (15) |
| N3—C4—N1 | 116.94 (17) | O2—C11—O1 | 123.62 (15) |
| N3—C4—N2 | 118.24 (15) | O2—C11—C10 | 121.44 (16) |
| N1—C4—N2 | 124.81 (16) | O1—C11—C10 | 114.94 (15) |
| C4—N1—C1—C2 | −0.5 (2) | C10—C5—C6—C7 | 0.3 (3) |
| C4—N1—C1—Cl1 | 179.02 (11) | C5—C6—C7—C8 | 0.3 (3) |
| N1—C1—C2—C3 | 1.1 (3) | C6—C7—C8—C9 | −0.4 (2) |
| Cl1—C1—C2—C3 | −178.45 (11) | C7—C8—C9—C10 | −0.2 (2) |
| C4—N2—C3—N4 | 178.65 (15) | C8—C9—C10—C5 | 0.9 (2) |
| C4—N2—C3—C2 | −1.2 (2) | C8—C9—C10—C11 | −178.71 (14) |
| C1—C2—C3—N4 | 179.98 (15) | C6—C5—C10—C9 | −0.9 (2) |
| C1—C2—C3—N2 | −0.1 (2) | C6—C5—C10—C11 | 178.67 (15) |
| C1—N1—C4—N3 | −179.82 (14) | C9—C10—C11—O2 | −179.79 (15) |
| C1—N1—C4—N2 | −1.0 (2) | C5—C10—C11—O2 | 0.6 (2) |
| C3—N2—C4—N3 | −179.31 (15) | C9—C10—C11—O1 | 0.5 (2) |
| C3—N2—C4—N1 | 1.9 (2) | C5—C10—C11—O1 | −179.08 (14) |
| H··· | ||||
| O1—H1 | 0.87 (2) | 1.74 (2) | 2.5976 (18) | 168 (3) |
| N4—H2 | 0.88 (2) | 2.03 (2) | 2.894 (2) | 171.2 (18) |
| N4—H1 | 0.88 (2) | 2.07 (2) | 2.902 (2) | 158.2 (19) |
| N3—H1 | 0.85 (2) | 2.18 (2) | 3.020 (2) | 171 (2) |
| C9—H9 | 0.95 | 2.99 | 3.6557 (19) | 128 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C5–C10 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1 | 0.87 (2) | 1.74 (2) | 2.5976 (18) | 168 (3) |
| N4—H2 | 0.88 (2) | 2.03 (2) | 2.894 (2) | 171.2 (18) |
| N4—H1 | 0.88 (2) | 2.07 (2) | 2.902 (2) | 158.2 (19) |
| N3—H1 | 0.85 (2) | 2.18 (2) | 3.020 (2) | 171 (2) |
| C9—H9 | 0.95 | 2.99 | 3.6557 (19) | 128 |
Symmetry codes: (i) ; (ii) ; (iii) .