Literature DB >> 23476238

4-({(Z)-5-[(Z)-3-Eth-oxy-4-hy-droxy-benzyl-idene]-3-methyl-4-oxo-1,3-thia-zolidin-2-yl-idene}amino)-benzoic acid dimethyl-formamide monosolvate.

Paul Kosma1, Edgar Selzer, Kurt Mereiter.   

Abstract

The mol-ecular structure of the title compound, C20H18N2O5S·C3H7NO, represents an essentially planar 5-benzyl-idene-thia-zolidine moiety (r.m.s. deviation from planarity without ring substituents = 0.095 Å) to which the 4-amino-benzoic acid fragment is inclined at 76.23 (1)°. In the crystal, the benzoic acid mol-ecules are arranged in layers parallel to [001] which are built up from inversion dimers held together by head-to-tail phenol-carb-oxy O-H⋯O hydrogen bonds and head-to-tail π-π stacking inter-actions between the 5-benzyl-idene-thia-zolidine moieties (ring centroid distance = 3.579 Å). These layers are separated by the dimethyl-formamide solvent mol-ecules which are firmly anchored via a short O-H⋯O hydrogen bond [O⋯O = 2.5529 (10) Å] donated by the -COOH group.

Entities:  

Year:  2012        PMID: 23476238      PMCID: PMC3589002          DOI: 10.1107/S1600536812047307

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bioactive compounds based on the 4-thia­zolidinone scaffold of the title compound, see: Ottanà et al. (2005 ▶); Verma & Saraf (2008 ▶). For potential anti­cancer activity via αvβ3 integrin antagonistic properties of 4-thia­zolidinone derivatives, see: Dayam et al. (2006 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶). For standard bond lengths, see: Allen et al. (1987 ▶). For crystal structures related to that of the title compound, see: Ottanà et al. (2005 ▶); Yavari et al. (2008 ▶); Deepthi et al. (2001 ▶); Tomaščiková et al. (2008 ▶).

Experimental

Crystal data

C20H18N2O5S·C3H7NO M = 471.52 Triclinic, a = 7.7532 (3) Å b = 9.3081 (3) Å c = 15.6969 (3) Å α = 86.390 (2)° β = 89.813 (2)° γ = 87.656 (2)° V = 1129.61 (6) Å3 Z = 2 Mo Kα radiation μ = 0.19 mm−1 T = 100 K 0.53 × 0.35 × 0.24 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.89, T max = 0.96 29040 measured reflections 6537 independent reflections 5993 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.094 S = 1.02 6537 reflections 304 parameters H-atom parameters constrained Δρmax = 0.51 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812047307/fk2066sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812047307/fk2066Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812047307/fk2066Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H18N2O5S·C3H7NOZ = 2
Mr = 471.52F(000) = 496
Triclinic, P1Dx = 1.386 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.7532 (3) ÅCell parameters from 9007 reflections
b = 9.3081 (3) Åθ = 2.2–30.0°
c = 15.6969 (3) ŵ = 0.19 mm1
α = 86.390 (2)°T = 100 K
β = 89.813 (2)°Prism, yellow
γ = 87.656 (2)°0.53 × 0.35 × 0.24 mm
V = 1129.61 (6) Å3
Bruker Kappa APEXII CCD diffractometer6537 independent reflections
Radiation source: fine-focus sealed tube5993 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.024
φ and ω scansθmax = 30.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −10→10
Tmin = 0.89, Tmax = 0.96k = −13→13
29040 measured reflectionsl = −22→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.094H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0516P)2 + 0.4019P] where P = (Fo2 + 2Fc2)/3
6537 reflections(Δ/σ)max = 0.002
304 parametersΔρmax = 0.51 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.41930 (3)0.65538 (2)0.349946 (14)0.01698 (6)
O10.80606 (9)0.38102 (8)0.35244 (5)0.02040 (14)
O20.37560 (9)0.96319 (8)0.62843 (5)0.02005 (14)
O30.65049 (10)0.96754 (8)0.73138 (5)0.02233 (15)
H3o0.55261.00910.73420.033*
O4−0.39179 (10)0.90766 (9)0.17578 (5)0.02725 (17)
O5−0.23650 (9)1.02278 (8)0.07406 (5)0.02368 (16)
H5o−0.33061.06890.06470.036*
N10.57050 (10)0.44691 (8)0.26982 (5)0.01658 (15)
N20.33188 (11)0.54753 (9)0.19732 (5)0.01936 (16)
C10.43011 (12)0.54409 (10)0.26183 (6)0.01595 (16)
C20.60871 (14)0.34431 (11)0.20524 (7)0.02270 (19)
H2A0.71530.28850.22050.034*
H2B0.62320.39650.14960.034*
H2C0.51330.27890.20220.034*
C30.67482 (12)0.45592 (10)0.33963 (6)0.01610 (16)
C40.60700 (12)0.56946 (10)0.39437 (6)0.01610 (16)
C50.69539 (12)0.59362 (10)0.46550 (6)0.01749 (17)
H50.79510.53160.47400.021*
C60.67052 (12)0.69420 (10)0.53172 (6)0.01676 (17)
C70.52167 (12)0.78354 (10)0.54232 (6)0.01713 (17)
H70.42770.78160.50370.021*
C80.51260 (12)0.87446 (10)0.60936 (6)0.01695 (17)
C90.65368 (12)0.87976 (10)0.66581 (6)0.01783 (17)
C100.79983 (13)0.79211 (11)0.65505 (6)0.01950 (18)
H100.89480.79540.69290.023*
C110.80769 (12)0.69964 (10)0.58921 (6)0.01877 (18)
H110.90780.63890.58290.023*
C120.22371 (12)0.96318 (10)0.57563 (6)0.01843 (17)
H12A0.17830.86520.57640.022*
H12B0.25140.99480.51590.022*
C130.09223 (13)1.06669 (11)0.61232 (7)0.02253 (19)
H13A0.06571.03380.67130.034*
H13B−0.01341.07050.57800.034*
H13C0.13921.16290.61150.034*
C140.18954 (12)0.64677 (10)0.18805 (6)0.01736 (17)
C150.03664 (13)0.62483 (11)0.23377 (6)0.02102 (19)
H150.03080.54770.27620.025*
C16−0.10619 (13)0.71632 (11)0.21680 (6)0.02002 (18)
H16−0.21000.70170.24790.024*
C17−0.09940 (12)0.82963 (10)0.15451 (6)0.01648 (17)
C180.05412 (12)0.85138 (10)0.10947 (6)0.01830 (17)
H180.05990.92890.06730.022*
C190.19814 (12)0.76057 (11)0.12589 (6)0.01939 (18)
H190.30210.77570.09500.023*
C20−0.25683 (12)0.92308 (11)0.13672 (6)0.01868 (18)
O6−0.49662 (10)1.18732 (8)0.02984 (5)0.02426 (16)
N3−0.76655 (11)1.27974 (10)0.05269 (6)0.02176 (17)
C21−0.63956 (13)1.18080 (11)0.06532 (6)0.02044 (18)
H21−0.65931.10020.10380.025*
C22−0.74498 (16)1.40627 (12)−0.00518 (7)0.0282 (2)
H22A−0.73841.49180.02790.042*
H22B−0.84361.4184−0.04420.042*
H22C−0.63841.3938−0.03810.042*
C23−0.92669 (15)1.27171 (13)0.10088 (8)0.0296 (2)
H23A−0.92391.18310.13810.044*
H23B−1.02421.27130.06130.044*
H23C−0.93991.35530.13570.044*
U11U22U33U12U13U23
S10.01676 (11)0.01661 (11)0.01742 (11)0.00188 (8)−0.00169 (8)−0.00148 (8)
O10.0160 (3)0.0205 (3)0.0241 (3)0.0017 (2)−0.0018 (3)0.0007 (3)
O20.0156 (3)0.0244 (3)0.0204 (3)0.0021 (3)−0.0045 (2)−0.0046 (3)
O30.0187 (3)0.0284 (4)0.0204 (3)0.0015 (3)−0.0037 (3)−0.0071 (3)
O40.0177 (3)0.0369 (4)0.0265 (4)0.0031 (3)0.0047 (3)−0.0001 (3)
O50.0171 (3)0.0238 (4)0.0289 (4)0.0042 (3)0.0005 (3)0.0049 (3)
N10.0170 (4)0.0158 (3)0.0168 (3)0.0017 (3)−0.0013 (3)−0.0016 (3)
N20.0195 (4)0.0195 (4)0.0187 (4)0.0026 (3)−0.0031 (3)−0.0005 (3)
C10.0158 (4)0.0148 (4)0.0170 (4)−0.0002 (3)0.0000 (3)0.0007 (3)
C20.0264 (5)0.0214 (4)0.0203 (4)0.0046 (4)−0.0009 (4)−0.0053 (3)
C30.0157 (4)0.0153 (4)0.0172 (4)−0.0025 (3)−0.0001 (3)0.0013 (3)
C40.0151 (4)0.0154 (4)0.0176 (4)−0.0013 (3)−0.0001 (3)0.0006 (3)
C50.0160 (4)0.0176 (4)0.0187 (4)−0.0014 (3)−0.0006 (3)0.0007 (3)
C60.0158 (4)0.0176 (4)0.0168 (4)−0.0021 (3)−0.0013 (3)0.0009 (3)
C70.0150 (4)0.0191 (4)0.0172 (4)−0.0024 (3)−0.0030 (3)0.0011 (3)
C80.0147 (4)0.0184 (4)0.0175 (4)−0.0018 (3)−0.0012 (3)0.0011 (3)
C90.0168 (4)0.0206 (4)0.0162 (4)−0.0030 (3)−0.0015 (3)−0.0001 (3)
C100.0159 (4)0.0241 (4)0.0184 (4)−0.0011 (3)−0.0040 (3)−0.0005 (3)
C110.0156 (4)0.0211 (4)0.0194 (4)0.0000 (3)−0.0025 (3)0.0003 (3)
C120.0155 (4)0.0204 (4)0.0194 (4)−0.0010 (3)−0.0038 (3)−0.0007 (3)
C130.0184 (4)0.0230 (5)0.0262 (5)0.0011 (3)−0.0025 (4)−0.0029 (4)
C140.0176 (4)0.0187 (4)0.0158 (4)0.0010 (3)−0.0037 (3)−0.0021 (3)
C150.0227 (5)0.0222 (4)0.0175 (4)0.0000 (3)0.0003 (3)0.0032 (3)
C160.0185 (4)0.0234 (4)0.0180 (4)−0.0016 (3)0.0024 (3)0.0006 (3)
C170.0148 (4)0.0189 (4)0.0158 (4)−0.0003 (3)−0.0004 (3)−0.0023 (3)
C180.0163 (4)0.0189 (4)0.0193 (4)−0.0002 (3)0.0006 (3)0.0019 (3)
C190.0157 (4)0.0210 (4)0.0210 (4)0.0001 (3)0.0012 (3)0.0017 (3)
C200.0163 (4)0.0214 (4)0.0186 (4)0.0002 (3)−0.0007 (3)−0.0040 (3)
O60.0219 (4)0.0275 (4)0.0226 (3)0.0059 (3)−0.0010 (3)0.0004 (3)
N30.0206 (4)0.0220 (4)0.0226 (4)0.0031 (3)−0.0031 (3)−0.0029 (3)
C210.0223 (5)0.0210 (4)0.0180 (4)0.0021 (3)−0.0045 (3)−0.0018 (3)
C220.0351 (6)0.0217 (5)0.0268 (5)0.0067 (4)−0.0057 (4)0.0010 (4)
C230.0212 (5)0.0342 (6)0.0344 (6)0.0010 (4)0.0011 (4)−0.0103 (5)
S1—C41.7564 (10)C11—H110.9500
S1—C11.7793 (9)C12—C131.5116 (14)
O1—C31.2197 (12)C12—H12A0.9900
O2—C81.3628 (11)C12—H12B0.9900
O2—C121.4423 (11)C13—H13A0.9800
O3—C91.3533 (12)C13—H13B0.9800
O3—H3o0.8400C13—H13C0.9800
O4—C201.2200 (12)C14—C191.3978 (13)
O5—C201.3227 (12)C14—C151.3993 (13)
O5—H5o0.8400C15—C161.3852 (14)
N1—C31.3729 (12)C15—H150.9500
N1—C11.3873 (12)C16—C171.3948 (13)
N1—C21.4575 (12)C16—H160.9500
N2—C11.2671 (12)C17—C181.3978 (13)
N2—C141.4118 (12)C17—C201.4863 (13)
C2—H2A0.9800C18—C191.3874 (13)
C2—H2B0.9800C18—H180.9500
C2—H2C0.9800C19—H190.9500
C3—C41.4824 (13)O6—C211.2406 (13)
C4—C51.3475 (13)N3—C211.3270 (13)
C5—C61.4494 (13)N3—C231.4539 (14)
C5—H50.9500N3—C221.4563 (14)
C6—C111.4015 (13)C21—H210.9500
C6—C71.4103 (13)C22—H22A0.9800
C7—C81.3912 (13)C22—H22B0.9800
C7—H70.9500C22—H22C0.9800
C8—C91.4143 (13)C23—H23A0.9800
C9—C101.3851 (14)C23—H23B0.9800
C10—C111.3857 (14)C23—H23C0.9800
C10—H100.9500
C4—S1—C191.11 (4)C13—C12—H12B110.4
C8—O2—C12117.96 (7)H12A—C12—H12B108.6
C9—O3—H3o109.5C12—C13—H13A109.5
C20—O5—H5o109.5C12—C13—H13B109.5
C3—N1—C1116.78 (8)H13A—C13—H13B109.5
C3—N1—C2121.81 (8)C12—C13—H13C109.5
C1—N1—C2121.36 (8)H13A—C13—H13C109.5
C1—N2—C14121.40 (8)H13B—C13—H13C109.5
N2—C1—N1120.85 (8)C19—C14—C15120.18 (9)
N2—C1—S1128.47 (7)C19—C14—N2118.40 (9)
N1—C1—S1110.67 (7)C15—C14—N2121.13 (9)
N1—C2—H2A109.5C16—C15—C14119.55 (9)
N1—C2—H2B109.5C16—C15—H15120.2
H2A—C2—H2B109.5C14—C15—H15120.2
N1—C2—H2C109.5C15—C16—C17120.75 (9)
H2A—C2—H2C109.5C15—C16—H16119.6
H2B—C2—H2C109.5C17—C16—H16119.6
O1—C3—N1123.42 (9)C16—C17—C18119.36 (9)
O1—C3—C4125.97 (9)C16—C17—C20119.06 (8)
N1—C3—C4110.60 (8)C18—C17—C20121.57 (8)
C5—C4—C3118.33 (8)C19—C18—C17120.46 (9)
C5—C4—S1130.83 (8)C19—C18—H18119.8
C3—C4—S1110.81 (7)C17—C18—H18119.8
C4—C5—C6133.55 (9)C18—C19—C14119.69 (9)
C4—C5—H5113.2C18—C19—H19120.2
C6—C5—H5113.2C14—C19—H19120.2
C11—C6—C7118.94 (9)O4—C20—O5123.61 (9)
C11—C6—C5115.68 (8)O4—C20—C17122.94 (9)
C7—C6—C5125.38 (8)O5—C20—C17113.45 (8)
C8—C7—C6119.89 (9)C21—N3—C23121.33 (9)
C8—C7—H7120.1C21—N3—C22120.97 (9)
C6—C7—H7120.1C23—N3—C22117.53 (9)
O2—C8—C7126.07 (9)O6—C21—N3123.87 (10)
O2—C8—C9113.74 (8)O6—C21—H21118.1
C7—C8—C9120.18 (9)N3—C21—H21118.1
O3—C9—C10118.26 (9)N3—C22—H22A109.5
O3—C9—C8121.99 (9)N3—C22—H22B109.5
C10—C9—C8119.74 (9)H22A—C22—H22B109.5
C9—C10—C11120.09 (9)N3—C22—H22C109.5
C9—C10—H10120.0H22A—C22—H22C109.5
C11—C10—H10120.0H22B—C22—H22C109.5
C10—C11—C6121.14 (9)N3—C23—H23A109.5
C10—C11—H11119.4N3—C23—H23B109.5
C6—C11—H11119.4H23A—C23—H23B109.5
O2—C12—C13106.71 (8)N3—C23—H23C109.5
O2—C12—H12A110.4H23A—C23—H23C109.5
C13—C12—H12A110.4H23B—C23—H23C109.5
O2—C12—H12B110.4
C14—N2—C1—N1−179.41 (8)O2—C8—C9—O3−0.99 (13)
C14—N2—C1—S1−1.09 (14)C7—C8—C9—O3179.48 (9)
C3—N1—C1—N2176.75 (9)O2—C8—C9—C10178.36 (9)
C2—N1—C1—N2−0.86 (14)C7—C8—C9—C10−1.18 (14)
C3—N1—C1—S1−1.85 (10)O3—C9—C10—C11179.38 (9)
C2—N1—C1—S1−179.46 (7)C8—C9—C10—C110.01 (14)
C4—S1—C1—N2−177.56 (9)C9—C10—C11—C60.98 (15)
C4—S1—C1—N10.90 (7)C7—C6—C11—C10−0.81 (14)
C1—N1—C3—O1−176.93 (8)C5—C6—C11—C10179.63 (9)
C2—N1—C3—O10.67 (14)C8—O2—C12—C13178.41 (8)
C1—N1—C3—C41.95 (11)C1—N2—C14—C19108.96 (11)
C2—N1—C3—C4179.54 (8)C1—N2—C14—C15−77.22 (13)
O1—C3—C4—C5−0.48 (14)C19—C14—C15—C160.23 (15)
N1—C3—C4—C5−179.32 (8)N2—C14—C15—C16−173.49 (9)
O1—C3—C4—S1177.69 (8)C14—C15—C16—C170.20 (15)
N1—C3—C4—S1−1.15 (9)C15—C16—C17—C18−0.59 (15)
C1—S1—C4—C5178.01 (10)C15—C16—C17—C20178.47 (9)
C1—S1—C4—C30.14 (7)C16—C17—C18—C190.56 (14)
C3—C4—C5—C6178.92 (9)C20—C17—C18—C19−178.48 (9)
S1—C4—C5—C61.18 (17)C17—C18—C19—C14−0.13 (15)
C4—C5—C6—C11−170.63 (10)C15—C14—C19—C18−0.27 (15)
C4—C5—C6—C79.84 (17)N2—C14—C19—C18173.62 (9)
C11—C6—C7—C8−0.36 (13)C16—C17—C20—O41.91 (15)
C5—C6—C7—C8179.15 (9)C18—C17—C20—O4−179.04 (10)
C12—O2—C8—C70.83 (14)C16—C17—C20—O5−177.34 (9)
C12—O2—C8—C9−178.67 (8)C18—C17—C20—O51.71 (13)
C6—C7—C8—O2−178.13 (9)C23—N3—C21—O6−175.35 (10)
C6—C7—C8—C91.34 (14)C22—N3—C21—O6−0.22 (16)
D—H···AD—HH···AD···AD—H···A
O5—H5o···O60.841.732.5529 (10)167
O3—H3o···O4i0.842.052.7386 (11)139
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O5—H5o⋯O60.841.732.5529 (10)167
O3—H3o⋯O4i 0.842.052.7386 (11)139

Symmetry code: (i) .

  6 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

Review 2.  4-thiazolidinone--a biologically active scaffold.

Authors:  Amit Verma; Shailendra K Saraf
Journal:  Eur J Med Chem       Date:  2007-08-06       Impact factor: 6.514

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  5-Arylidene-2-imino-4-thiazolidinones: design and synthesis of novel anti-inflammatory agents.

Authors:  Rosaria Ottanà; Rosanna Maccari; Maria Letizia Barreca; Giuseppe Bruno; Archimede Rotondo; Antonietta Rossi; Giuseppa Chiricosta; Rosanna Di Paola; Lidia Sautebin; Salvatore Cuzzocrea; Maria Gabriella Vigorita
Journal:  Bioorg Med Chem       Date:  2005-07-01       Impact factor: 3.641

5.  Discovery of small molecule integrin alphavbeta3 antagonists as novel anticancer agents.

Authors:  Raveendra Dayam; Francesca Aiello; Jinxia Deng; Yun Wu; Antonio Garofalo; Xiaoyuan Chen; Nouri Neamati
Journal:  J Med Chem       Date:  2006-07-27       Impact factor: 7.446

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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