| Literature DB >> 23476234 |
Srinivasan Muralidharan1, Yechuri Vidyalakshmi, Thothadri Srinivasan, Rengasamy Gopalakrishnan, Devadasan Velmurugan.
Abstract
In the title adduct, 2C6H5NO3·C4H9NO, the morpholine ring adopts a chair conformation. The dihedral angle between the two nitro-phenol rings is 69.47 (9)°. The nitro groups attached to the benzene rings make dihedral angles of 3.37 (16) and 3.14 (13)° in the two mol-ecules of nitro-phenol. The crystal structure is stabilized by N-H⋯O, O-H⋯N and O-H⋯O hydrogen bonds and further consolidated by C-H⋯O inter-actions, resulting in a three-dimensional network.Entities:
Year: 2012 PMID: 23476234 PMCID: PMC3588998 DOI: 10.1107/S1600536812047174
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| 2C6H5NO3·C4H9NO | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 4354 reflections |
| θ = 1.1–28.4° | |
| µ = 0.11 mm−1 | |
| β = 91.606 (3)° | Block, colourless |
| 0.35 × 0.30 × 0.25 mm | |
| Bruker SMART APEXII area-detector diffractometer | 4354 independent reflections |
| Radiation source: fine-focus sealed tube | 2987 reflections with |
| Graphite monochromator | |
| ω and φ scans | θmax = 28.4°, θmin = 1.1° |
| Absorption correction: multi-scan ( | |
| 16662 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4354 reflections | (Δ/σ)max < 0.001 |
| 239 parameters | Δρmax = 0.45 e Å−3 |
| 0 restraints | Δρmin = −0.30 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| C1 | 0.53902 (9) | 0.5777 (3) | 0.10103 (10) | 0.0565 (4) | |
| C2 | 0.55081 (10) | 0.3693 (4) | 0.14223 (11) | 0.0648 (5) | |
| H2 | 0.5982 | 0.3048 | 0.1474 | 0.078* | |
| C3 | 0.49232 (10) | 0.2585 (4) | 0.17542 (12) | 0.0659 (5) | |
| H3 | 0.5001 | 0.1191 | 0.2038 | 0.079* | |
| C4 | 0.42092 (10) | 0.3533 (3) | 0.16694 (10) | 0.0560 (4) | |
| C5 | 0.41037 (10) | 0.5620 (3) | 0.12451 (11) | 0.0616 (5) | |
| H5 | 0.3630 | 0.6260 | 0.1183 | 0.074* | |
| C6 | 0.46899 (10) | 0.6747 (4) | 0.09170 (11) | 0.0628 (5) | |
| H6 | 0.4617 | 0.8148 | 0.0635 | 0.075* | |
| C7 | 0.13017 (10) | 0.8918 (3) | 0.31527 (9) | 0.0553 (4) | |
| C8 | 0.09076 (10) | 0.7063 (4) | 0.28005 (10) | 0.0588 (4) | |
| H8 | 0.0404 | 0.6875 | 0.2884 | 0.071* | |
| C9 | 0.12639 (9) | 0.5524 (3) | 0.23317 (10) | 0.0539 (4) | |
| H9 | 0.0996 | 0.4294 | 0.2093 | 0.065* | |
| C10 | 0.20240 (9) | 0.5739 (3) | 0.21978 (9) | 0.0469 (4) | |
| C11 | 0.24071 (10) | 0.7647 (4) | 0.25620 (10) | 0.0585 (4) | |
| H11 | 0.2911 | 0.7845 | 0.2483 | 0.070* | |
| C12 | 0.20488 (11) | 0.9213 (3) | 0.30297 (10) | 0.0624 (5) | |
| H12 | 0.2308 | 1.0470 | 0.3264 | 0.075* | |
| C13 | 0.11073 (9) | 0.0465 (3) | 0.07932 (11) | 0.0572 (4) | |
| H13A | 0.0692 | 0.1572 | 0.0801 | 0.069* | |
| H13B | 0.1164 | −0.0247 | 0.1298 | 0.069* | |
| C14 | 0.09471 (11) | −0.1474 (3) | 0.02155 (12) | 0.0629 (5) | |
| H14A | 0.0513 | −0.2372 | 0.0364 | 0.076* | |
| H14B | 0.0839 | −0.0750 | −0.0280 | 0.076* | |
| C15 | 0.21931 (12) | −0.1788 (4) | −0.00757 (13) | 0.0739 (6) | |
| H15A | 0.2090 | −0.1040 | −0.0568 | 0.089* | |
| H15B | 0.2600 | −0.2907 | −0.0134 | 0.089* | |
| C16 | 0.24145 (10) | 0.0101 (3) | 0.04962 (11) | 0.0594 (5) | |
| H16A | 0.2553 | −0.0654 | 0.0979 | 0.071* | |
| H16B | 0.2841 | 0.0973 | 0.0317 | 0.071* | |
| N1 | 0.60131 (9) | 0.6983 (4) | 0.06695 (11) | 0.0732 (5) | |
| N2 | 0.09282 (13) | 1.0491 (3) | 0.36639 (9) | 0.0775 (5) | |
| O7 | 0.15556 (8) | −0.3055 (2) | 0.01578 (9) | 0.0733 (4) | |
| O1 | 0.66276 (8) | 0.6053 (4) | 0.07188 (11) | 0.1022 (6) | |
| O2 | 0.59056 (10) | 0.8873 (4) | 0.03293 (13) | 0.1106 (7) | |
| O3 | 0.36561 (7) | 0.2375 (3) | 0.20120 (9) | 0.0792 (4) | |
| H3A | 0.3265 | 0.3093 | 0.1929 | 0.119* | |
| O4 | 0.12927 (12) | 1.2119 (3) | 0.39774 (9) | 0.1007 (6) | |
| O5 | 0.02664 (12) | 1.0156 (4) | 0.37853 (11) | 0.1164 (7) | |
| O6 | 0.23640 (6) | 0.4276 (2) | 0.17466 (7) | 0.0620 (3) | |
| H6A | 0.2068 | 0.3287 | 0.1572 | 0.093* | |
| N3 | 0.17917 (8) | 0.1798 (2) | 0.06111 (9) | 0.0483 (3) | |
| H3B | 0.1748 (10) | 0.258 (3) | 0.0250 (11) | 0.055 (6)* |
| C1 | 0.0503 (9) | 0.0618 (10) | 0.0574 (10) | 0.0096 (8) | 0.0024 (7) | −0.0051 (9) |
| C2 | 0.0521 (9) | 0.0705 (12) | 0.0714 (12) | 0.0183 (9) | −0.0053 (8) | −0.0017 (10) |
| C3 | 0.0634 (11) | 0.0604 (11) | 0.0731 (13) | 0.0134 (9) | −0.0087 (9) | 0.0083 (10) |
| C4 | 0.0527 (9) | 0.0558 (10) | 0.0592 (10) | 0.0030 (8) | −0.0059 (8) | −0.0037 (8) |
| C5 | 0.0475 (9) | 0.0645 (11) | 0.0726 (12) | 0.0143 (8) | −0.0027 (8) | 0.0050 (10) |
| C6 | 0.0583 (10) | 0.0596 (11) | 0.0708 (12) | 0.0160 (8) | 0.0045 (9) | 0.0081 (9) |
| C7 | 0.0746 (11) | 0.0519 (9) | 0.0389 (8) | 0.0103 (8) | −0.0055 (7) | −0.0029 (7) |
| C8 | 0.0534 (9) | 0.0688 (11) | 0.0541 (10) | 0.0030 (8) | 0.0013 (7) | −0.0060 (9) |
| C9 | 0.0514 (9) | 0.0542 (9) | 0.0560 (10) | −0.0084 (7) | −0.0001 (7) | −0.0106 (8) |
| C10 | 0.0504 (8) | 0.0497 (8) | 0.0404 (8) | −0.0022 (7) | −0.0026 (6) | 0.0002 (7) |
| C11 | 0.0559 (9) | 0.0685 (11) | 0.0510 (10) | −0.0146 (8) | −0.0030 (7) | −0.0055 (9) |
| C12 | 0.0846 (13) | 0.0552 (10) | 0.0467 (9) | −0.0163 (9) | −0.0113 (9) | −0.0067 (8) |
| C13 | 0.0520 (9) | 0.0584 (10) | 0.0615 (10) | 0.0025 (8) | 0.0093 (8) | 0.0002 (8) |
| C14 | 0.0641 (11) | 0.0514 (10) | 0.0733 (12) | −0.0119 (8) | 0.0015 (9) | 0.0043 (9) |
| C15 | 0.0754 (13) | 0.0680 (12) | 0.0786 (14) | 0.0166 (10) | 0.0104 (10) | −0.0227 (11) |
| C16 | 0.0511 (9) | 0.0648 (11) | 0.0628 (11) | 0.0035 (8) | 0.0099 (8) | −0.0092 (9) |
| N1 | 0.0579 (9) | 0.0808 (12) | 0.0816 (12) | 0.0131 (8) | 0.0145 (8) | 0.0011 (10) |
| N2 | 0.1161 (16) | 0.0702 (11) | 0.0454 (9) | 0.0301 (11) | −0.0100 (9) | −0.0105 (8) |
| O7 | 0.0931 (10) | 0.0374 (6) | 0.0891 (10) | −0.0001 (6) | −0.0031 (8) | −0.0037 (6) |
| O1 | 0.0543 (8) | 0.1261 (15) | 0.1269 (14) | 0.0210 (9) | 0.0169 (8) | 0.0207 (12) |
| O2 | 0.0830 (11) | 0.0936 (12) | 0.1573 (18) | 0.0169 (10) | 0.0437 (11) | 0.0417 (13) |
| O3 | 0.0595 (8) | 0.0772 (9) | 0.1010 (11) | −0.0002 (7) | 0.0000 (7) | 0.0206 (9) |
| O4 | 0.1836 (19) | 0.0604 (9) | 0.0576 (9) | 0.0131 (11) | −0.0061 (10) | −0.0163 (7) |
| O5 | 0.1010 (14) | 0.1490 (18) | 0.0994 (13) | 0.0500 (13) | 0.0057 (11) | −0.0458 (13) |
| O6 | 0.0515 (6) | 0.0723 (8) | 0.0619 (7) | 0.0003 (6) | −0.0010 (5) | −0.0193 (7) |
| N3 | 0.0595 (8) | 0.0377 (7) | 0.0476 (8) | 0.0013 (6) | 0.0029 (6) | 0.0053 (6) |
| C1—C2 | 1.379 (3) | C12—H12 | 0.9300 |
| C1—C6 | 1.379 (2) | C13—N3 | 1.483 (2) |
| C1—N1 | 1.451 (2) | C13—C14 | 1.501 (3) |
| C2—C3 | 1.366 (3) | C13—H13A | 0.9700 |
| C2—H2 | 0.9300 | C13—H13B | 0.9700 |
| C3—C4 | 1.396 (2) | C14—O7 | 1.413 (2) |
| C3—H3 | 0.9300 | C14—H14A | 0.9700 |
| C4—O3 | 1.343 (2) | C14—H14B | 0.9700 |
| C4—C5 | 1.389 (3) | C15—O7 | 1.419 (3) |
| C5—C6 | 1.369 (3) | C15—C16 | 1.498 (3) |
| C5—H5 | 0.9300 | C15—H15A | 0.9700 |
| C6—H6 | 0.9300 | C15—H15B | 0.9700 |
| C7—C12 | 1.380 (3) | C16—N3 | 1.486 (2) |
| C7—C8 | 1.388 (3) | C16—H16A | 0.9700 |
| C7—N2 | 1.433 (2) | C16—H16B | 0.9700 |
| C8—C9 | 1.360 (2) | N1—O2 | 1.222 (2) |
| C8—H8 | 0.9300 | N1—O1 | 1.224 (2) |
| C9—C10 | 1.403 (2) | N2—O5 | 1.233 (3) |
| C9—H9 | 0.9300 | N2—O4 | 1.238 (2) |
| C10—O6 | 1.2998 (19) | O3—H3A | 0.8200 |
| C10—C11 | 1.409 (2) | O6—H6A | 0.8200 |
| C11—C12 | 1.370 (3) | N3—H3B | 0.77 (2) |
| C11—H11 | 0.9300 | ||
| C2—C1—C6 | 121.24 (17) | N3—C13—C14 | 111.17 (14) |
| C2—C1—N1 | 119.60 (16) | N3—C13—H13A | 109.4 |
| C6—C1—N1 | 119.16 (17) | C14—C13—H13A | 109.4 |
| C3—C2—C1 | 119.50 (16) | N3—C13—H13B | 109.4 |
| C3—C2—H2 | 120.2 | C14—C13—H13B | 109.4 |
| C1—C2—H2 | 120.2 | H13A—C13—H13B | 108.0 |
| C2—C3—C4 | 120.37 (18) | O7—C14—C13 | 111.16 (15) |
| C2—C3—H3 | 119.8 | O7—C14—H14A | 109.4 |
| C4—C3—H3 | 119.8 | C13—C14—H14A | 109.4 |
| O3—C4—C5 | 123.20 (16) | O7—C14—H14B | 109.4 |
| O3—C4—C3 | 117.78 (17) | C13—C14—H14B | 109.4 |
| C5—C4—C3 | 119.02 (17) | H14A—C14—H14B | 108.0 |
| C6—C5—C4 | 120.76 (16) | O7—C15—C16 | 111.09 (16) |
| C6—C5—H5 | 119.6 | O7—C15—H15A | 109.4 |
| C4—C5—H5 | 119.6 | C16—C15—H15A | 109.4 |
| C5—C6—C1 | 119.10 (18) | O7—C15—H15B | 109.4 |
| C5—C6—H6 | 120.4 | C16—C15—H15B | 109.4 |
| C1—C6—H6 | 120.4 | H15A—C15—H15B | 108.0 |
| C12—C7—C8 | 120.62 (16) | N3—C16—C15 | 110.39 (15) |
| C12—C7—N2 | 120.17 (18) | N3—C16—H16A | 109.6 |
| C8—C7—N2 | 119.19 (18) | C15—C16—H16A | 109.6 |
| C9—C8—C7 | 119.44 (17) | N3—C16—H16B | 109.6 |
| C9—C8—H8 | 120.3 | C15—C16—H16B | 109.6 |
| C7—C8—H8 | 120.3 | H16A—C16—H16B | 108.1 |
| C8—C9—C10 | 121.85 (16) | O2—N1—O1 | 121.97 (19) |
| C8—C9—H9 | 119.1 | O2—N1—C1 | 118.97 (16) |
| C10—C9—H9 | 119.1 | O1—N1—C1 | 119.05 (19) |
| O6—C10—C9 | 121.87 (15) | O5—N2—O4 | 122.6 (2) |
| O6—C10—C11 | 120.85 (15) | O5—N2—C7 | 119.3 (2) |
| C9—C10—C11 | 117.26 (15) | O4—N2—C7 | 118.1 (2) |
| C12—C11—C10 | 121.06 (17) | C14—O7—C15 | 110.39 (14) |
| C12—C11—H11 | 119.5 | C4—O3—H3A | 109.5 |
| C10—C11—H11 | 119.5 | C10—O6—H6A | 109.5 |
| C11—C12—C7 | 119.76 (16) | C13—N3—C16 | 110.35 (13) |
| C11—C12—H12 | 120.1 | C13—N3—H3B | 113.2 (14) |
| C7—C12—H12 | 120.1 | C16—N3—H3B | 108.0 (14) |
| C6—C1—C2—C3 | −1.0 (3) | C10—C11—C12—C7 | 0.4 (3) |
| N1—C1—C2—C3 | 178.82 (18) | C8—C7—C12—C11 | −0.7 (3) |
| C1—C2—C3—C4 | 0.8 (3) | N2—C7—C12—C11 | 177.62 (17) |
| C2—C3—C4—O3 | −179.62 (18) | N3—C13—C14—O7 | 56.0 (2) |
| C2—C3—C4—C5 | −0.2 (3) | O7—C15—C16—N3 | −57.5 (2) |
| O3—C4—C5—C6 | 179.03 (19) | C2—C1—N1—O2 | −177.4 (2) |
| C3—C4—C5—C6 | −0.4 (3) | C6—C1—N1—O2 | 2.4 (3) |
| C4—C5—C6—C1 | 0.3 (3) | C2—C1—N1—O1 | 4.0 (3) |
| C2—C1—C6—C5 | 0.4 (3) | C6—C1—N1—O1 | −176.2 (2) |
| N1—C1—C6—C5 | −179.37 (18) | C12—C7—N2—O5 | −177.76 (19) |
| C12—C7—C8—C9 | 0.1 (3) | C8—C7—N2—O5 | 0.6 (3) |
| N2—C7—C8—C9 | −178.17 (17) | C12—C7—N2—O4 | 1.0 (3) |
| C7—C8—C9—C10 | 0.6 (3) | C8—C7—N2—O4 | 179.30 (17) |
| C8—C9—C10—O6 | −179.63 (17) | C13—C14—O7—C15 | −60.4 (2) |
| C8—C9—C10—C11 | −0.8 (3) | C16—C15—O7—C14 | 61.5 (2) |
| O6—C10—C11—C12 | 179.10 (16) | C14—C13—N3—C16 | −51.7 (2) |
| C9—C10—C11—C12 | 0.3 (3) | C15—C16—N3—C13 | 52.3 (2) |
| H··· | ||||
| N3—H3 | 0.77 (2) | 2.46 (2) | 3.000 (2) | 129 (2) |
| N3—H3 | 0.77 (2) | 2.36 (2) | 3.032 (2) | 147 (2) |
| C14—H14 | 0.97 | 2.55 | 3.322 (3) | 136 |
| O3—H3 | 0.82 | 1.77 | 2.590 (2) | 173 |
| O6—H6 | 0.82 | 1.93 | 2.607 (2) | 140 |
| C6—H6···O2iii | 0.93 | 2.53 | 3.424 (3) | 161 |
| C14—H14 | 0.97 | 2.49 | 3.403 (3) | 157 |
| C15—H15 | 0.97 | 2.48 | 3.400 (3) | 159 |
| C16—H16 | 0.97 | 2.56 | 3.441 (3) | 152 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N3—H3 | 0.77 (2) | 2.46 (2) | 3.000 (2) | 129 (2) |
| N3—H3 | 0.77 (2) | 2.36 (2) | 3.032 (2) | 147 (2) |
| C14—H14 | 0.97 | 2.55 | 3.322 (3) | 136 |
| O3—H3 | 0.82 | 1.77 | 2.590 (2) | 173 |
| O6—H6 | 0.82 | 1.93 | 2.607 (2) | 140 |
| C6—H6⋯O2iii | 0.93 | 2.53 | 3.424 (3) | 161 |
| C14—H14 | 0.97 | 2.49 | 3.403 (3) | 157 |
| C15—H15 | 0.97 | 2.48 | 3.400 (3) | 159 |
| C16—H16 | 0.97 | 2.56 | 3.441 (3) | 152 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .