Literature DB >> 23476234

Morpholine-4-nitro-phenol (1/2).

Srinivasan Muralidharan1, Yechuri Vidyalakshmi, Thothadri Srinivasan, Rengasamy Gopalakrishnan, Devadasan Velmurugan.   

Abstract

In the title adduct, 2C6H5NO3·C4H9NO, the morpholine ring adopts a chair conformation. The dihedral angle between the two nitro-phenol rings is 69.47 (9)°. The nitro groups attached to the benzene rings make dihedral angles of 3.37 (16) and 3.14 (13)° in the two mol-ecules of nitro-phenol. The crystal structure is stabilized by N-H⋯O, O-H⋯N and O-H⋯O hydrogen bonds and further consolidated by C-H⋯O inter-actions, resulting in a three-dimensional network.

Entities:  

Year:  2012        PMID: 23476234      PMCID: PMC3588998          DOI: 10.1107/S1600536812047174

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity and synthesis of 4-(4-nitro­phen­yl)–morpholine derivatives, see: Wang et al. (2010 ▶). For a related structure, see: Wang et al. (2012 ▶).

Experimental

Crystal data

2C6H5NO3·C4H9NO M = 365.34 Monoclinic, a = 18.0381 (7) Å b = 5.5673 (2) Å c = 17.4910 (7) Å β = 91.606 (3)° V = 1755.82 (12) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 293 K 0.35 × 0.30 × 0.25 mm

Data collection

Bruker SMART APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.963, T max = 0.973 16662 measured reflections 4354 independent reflections 2987 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.151 S = 1.05 4354 reflections 239 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.45 e Å−3 Δρmin = −0.30 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812047174/pv2605sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812047174/pv2605Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C6H5NO3·C4H9NOF(000) = 768
Mr = 365.34Dx = 1.382 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4354 reflections
a = 18.0381 (7) Åθ = 1.1–28.4°
b = 5.5673 (2) ŵ = 0.11 mm1
c = 17.4910 (7) ÅT = 293 K
β = 91.606 (3)°Block, colourless
V = 1755.82 (12) Å30.35 × 0.30 × 0.25 mm
Z = 4
Bruker SMART APEXII area-detector diffractometer4354 independent reflections
Radiation source: fine-focus sealed tube2987 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
ω and φ scansθmax = 28.4°, θmin = 1.1°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −24→24
Tmin = 0.963, Tmax = 0.973k = −7→7
16662 measured reflectionsl = −23→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.151H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0638P)2 + 0.4643P] where P = (Fo2 + 2Fc2)/3
4354 reflections(Δ/σ)max < 0.001
239 parametersΔρmax = 0.45 e Å3
0 restraintsΔρmin = −0.30 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.53902 (9)0.5777 (3)0.10103 (10)0.0565 (4)
C20.55081 (10)0.3693 (4)0.14223 (11)0.0648 (5)
H20.59820.30480.14740.078*
C30.49232 (10)0.2585 (4)0.17542 (12)0.0659 (5)
H30.50010.11910.20380.079*
C40.42092 (10)0.3533 (3)0.16694 (10)0.0560 (4)
C50.41037 (10)0.5620 (3)0.12451 (11)0.0616 (5)
H50.36300.62600.11830.074*
C60.46899 (10)0.6747 (4)0.09170 (11)0.0628 (5)
H60.46170.81480.06350.075*
C70.13017 (10)0.8918 (3)0.31527 (9)0.0553 (4)
C80.09076 (10)0.7063 (4)0.28005 (10)0.0588 (4)
H80.04040.68750.28840.071*
C90.12639 (9)0.5524 (3)0.23317 (10)0.0539 (4)
H90.09960.42940.20930.065*
C100.20240 (9)0.5739 (3)0.21978 (9)0.0469 (4)
C110.24071 (10)0.7647 (4)0.25620 (10)0.0585 (4)
H110.29110.78450.24830.070*
C120.20488 (11)0.9213 (3)0.30297 (10)0.0624 (5)
H120.23081.04700.32640.075*
C130.11073 (9)0.0465 (3)0.07932 (11)0.0572 (4)
H13A0.06920.15720.08010.069*
H13B0.1164−0.02470.12980.069*
C140.09471 (11)−0.1474 (3)0.02155 (12)0.0629 (5)
H14A0.0513−0.23720.03640.076*
H14B0.0839−0.0750−0.02800.076*
C150.21931 (12)−0.1788 (4)−0.00757 (13)0.0739 (6)
H15A0.2090−0.1040−0.05680.089*
H15B0.2600−0.2907−0.01340.089*
C160.24145 (10)0.0101 (3)0.04962 (11)0.0594 (5)
H16A0.2553−0.06540.09790.071*
H16B0.28410.09730.03170.071*
N10.60131 (9)0.6983 (4)0.06695 (11)0.0732 (5)
N20.09282 (13)1.0491 (3)0.36639 (9)0.0775 (5)
O70.15556 (8)−0.3055 (2)0.01578 (9)0.0733 (4)
O10.66276 (8)0.6053 (4)0.07188 (11)0.1022 (6)
O20.59056 (10)0.8873 (4)0.03293 (13)0.1106 (7)
O30.36561 (7)0.2375 (3)0.20120 (9)0.0792 (4)
H3A0.32650.30930.19290.119*
O40.12927 (12)1.2119 (3)0.39774 (9)0.1007 (6)
O50.02664 (12)1.0156 (4)0.37853 (11)0.1164 (7)
O60.23640 (6)0.4276 (2)0.17466 (7)0.0620 (3)
H6A0.20680.32870.15720.093*
N30.17917 (8)0.1798 (2)0.06111 (9)0.0483 (3)
H3B0.1748 (10)0.258 (3)0.0250 (11)0.055 (6)*
U11U22U33U12U13U23
C10.0503 (9)0.0618 (10)0.0574 (10)0.0096 (8)0.0024 (7)−0.0051 (9)
C20.0521 (9)0.0705 (12)0.0714 (12)0.0183 (9)−0.0053 (8)−0.0017 (10)
C30.0634 (11)0.0604 (11)0.0731 (13)0.0134 (9)−0.0087 (9)0.0083 (10)
C40.0527 (9)0.0558 (10)0.0592 (10)0.0030 (8)−0.0059 (8)−0.0037 (8)
C50.0475 (9)0.0645 (11)0.0726 (12)0.0143 (8)−0.0027 (8)0.0050 (10)
C60.0583 (10)0.0596 (11)0.0708 (12)0.0160 (8)0.0045 (9)0.0081 (9)
C70.0746 (11)0.0519 (9)0.0389 (8)0.0103 (8)−0.0055 (7)−0.0029 (7)
C80.0534 (9)0.0688 (11)0.0541 (10)0.0030 (8)0.0013 (7)−0.0060 (9)
C90.0514 (9)0.0542 (9)0.0560 (10)−0.0084 (7)−0.0001 (7)−0.0106 (8)
C100.0504 (8)0.0497 (8)0.0404 (8)−0.0022 (7)−0.0026 (6)0.0002 (7)
C110.0559 (9)0.0685 (11)0.0510 (10)−0.0146 (8)−0.0030 (7)−0.0055 (9)
C120.0846 (13)0.0552 (10)0.0467 (9)−0.0163 (9)−0.0113 (9)−0.0067 (8)
C130.0520 (9)0.0584 (10)0.0615 (10)0.0025 (8)0.0093 (8)0.0002 (8)
C140.0641 (11)0.0514 (10)0.0733 (12)−0.0119 (8)0.0015 (9)0.0043 (9)
C150.0754 (13)0.0680 (12)0.0786 (14)0.0166 (10)0.0104 (10)−0.0227 (11)
C160.0511 (9)0.0648 (11)0.0628 (11)0.0035 (8)0.0099 (8)−0.0092 (9)
N10.0579 (9)0.0808 (12)0.0816 (12)0.0131 (8)0.0145 (8)0.0011 (10)
N20.1161 (16)0.0702 (11)0.0454 (9)0.0301 (11)−0.0100 (9)−0.0105 (8)
O70.0931 (10)0.0374 (6)0.0891 (10)−0.0001 (6)−0.0031 (8)−0.0037 (6)
O10.0543 (8)0.1261 (15)0.1269 (14)0.0210 (9)0.0169 (8)0.0207 (12)
O20.0830 (11)0.0936 (12)0.1573 (18)0.0169 (10)0.0437 (11)0.0417 (13)
O30.0595 (8)0.0772 (9)0.1010 (11)−0.0002 (7)0.0000 (7)0.0206 (9)
O40.1836 (19)0.0604 (9)0.0576 (9)0.0131 (11)−0.0061 (10)−0.0163 (7)
O50.1010 (14)0.1490 (18)0.0994 (13)0.0500 (13)0.0057 (11)−0.0458 (13)
O60.0515 (6)0.0723 (8)0.0619 (7)0.0003 (6)−0.0010 (5)−0.0193 (7)
N30.0595 (8)0.0377 (7)0.0476 (8)0.0013 (6)0.0029 (6)0.0053 (6)
C1—C21.379 (3)C12—H120.9300
C1—C61.379 (2)C13—N31.483 (2)
C1—N11.451 (2)C13—C141.501 (3)
C2—C31.366 (3)C13—H13A0.9700
C2—H20.9300C13—H13B0.9700
C3—C41.396 (2)C14—O71.413 (2)
C3—H30.9300C14—H14A0.9700
C4—O31.343 (2)C14—H14B0.9700
C4—C51.389 (3)C15—O71.419 (3)
C5—C61.369 (3)C15—C161.498 (3)
C5—H50.9300C15—H15A0.9700
C6—H60.9300C15—H15B0.9700
C7—C121.380 (3)C16—N31.486 (2)
C7—C81.388 (3)C16—H16A0.9700
C7—N21.433 (2)C16—H16B0.9700
C8—C91.360 (2)N1—O21.222 (2)
C8—H80.9300N1—O11.224 (2)
C9—C101.403 (2)N2—O51.233 (3)
C9—H90.9300N2—O41.238 (2)
C10—O61.2998 (19)O3—H3A0.8200
C10—C111.409 (2)O6—H6A0.8200
C11—C121.370 (3)N3—H3B0.77 (2)
C11—H110.9300
C2—C1—C6121.24 (17)N3—C13—C14111.17 (14)
C2—C1—N1119.60 (16)N3—C13—H13A109.4
C6—C1—N1119.16 (17)C14—C13—H13A109.4
C3—C2—C1119.50 (16)N3—C13—H13B109.4
C3—C2—H2120.2C14—C13—H13B109.4
C1—C2—H2120.2H13A—C13—H13B108.0
C2—C3—C4120.37 (18)O7—C14—C13111.16 (15)
C2—C3—H3119.8O7—C14—H14A109.4
C4—C3—H3119.8C13—C14—H14A109.4
O3—C4—C5123.20 (16)O7—C14—H14B109.4
O3—C4—C3117.78 (17)C13—C14—H14B109.4
C5—C4—C3119.02 (17)H14A—C14—H14B108.0
C6—C5—C4120.76 (16)O7—C15—C16111.09 (16)
C6—C5—H5119.6O7—C15—H15A109.4
C4—C5—H5119.6C16—C15—H15A109.4
C5—C6—C1119.10 (18)O7—C15—H15B109.4
C5—C6—H6120.4C16—C15—H15B109.4
C1—C6—H6120.4H15A—C15—H15B108.0
C12—C7—C8120.62 (16)N3—C16—C15110.39 (15)
C12—C7—N2120.17 (18)N3—C16—H16A109.6
C8—C7—N2119.19 (18)C15—C16—H16A109.6
C9—C8—C7119.44 (17)N3—C16—H16B109.6
C9—C8—H8120.3C15—C16—H16B109.6
C7—C8—H8120.3H16A—C16—H16B108.1
C8—C9—C10121.85 (16)O2—N1—O1121.97 (19)
C8—C9—H9119.1O2—N1—C1118.97 (16)
C10—C9—H9119.1O1—N1—C1119.05 (19)
O6—C10—C9121.87 (15)O5—N2—O4122.6 (2)
O6—C10—C11120.85 (15)O5—N2—C7119.3 (2)
C9—C10—C11117.26 (15)O4—N2—C7118.1 (2)
C12—C11—C10121.06 (17)C14—O7—C15110.39 (14)
C12—C11—H11119.5C4—O3—H3A109.5
C10—C11—H11119.5C10—O6—H6A109.5
C11—C12—C7119.76 (16)C13—N3—C16110.35 (13)
C11—C12—H12120.1C13—N3—H3B113.2 (14)
C7—C12—H12120.1C16—N3—H3B108.0 (14)
C6—C1—C2—C3−1.0 (3)C10—C11—C12—C70.4 (3)
N1—C1—C2—C3178.82 (18)C8—C7—C12—C11−0.7 (3)
C1—C2—C3—C40.8 (3)N2—C7—C12—C11177.62 (17)
C2—C3—C4—O3−179.62 (18)N3—C13—C14—O756.0 (2)
C2—C3—C4—C5−0.2 (3)O7—C15—C16—N3−57.5 (2)
O3—C4—C5—C6179.03 (19)C2—C1—N1—O2−177.4 (2)
C3—C4—C5—C6−0.4 (3)C6—C1—N1—O22.4 (3)
C4—C5—C6—C10.3 (3)C2—C1—N1—O14.0 (3)
C2—C1—C6—C50.4 (3)C6—C1—N1—O1−176.2 (2)
N1—C1—C6—C5−179.37 (18)C12—C7—N2—O5−177.76 (19)
C12—C7—C8—C90.1 (3)C8—C7—N2—O50.6 (3)
N2—C7—C8—C9−178.17 (17)C12—C7—N2—O41.0 (3)
C7—C8—C9—C100.6 (3)C8—C7—N2—O4179.30 (17)
C8—C9—C10—O6−179.63 (17)C13—C14—O7—C15−60.4 (2)
C8—C9—C10—C11−0.8 (3)C16—C15—O7—C1461.5 (2)
O6—C10—C11—C12179.10 (16)C14—C13—N3—C16−51.7 (2)
C9—C10—C11—C120.3 (3)C15—C16—N3—C1352.3 (2)
D—H···AD—HH···AD···AD—H···A
N3—H3B···O7i0.77 (2)2.46 (2)3.000 (2)129 (2)
N3—H3B···O4ii0.77 (2)2.36 (2)3.032 (2)147 (2)
C14—H14B···O4ii0.972.553.322 (3)136
O3—H3A···O60.821.772.590 (2)173
O6—H6A···N30.821.932.607 (2)140
C6—H6···O2iii0.932.533.424 (3)161
C14—H14A···O5iv0.972.493.403 (3)157
C15—H15B···O1v0.972.483.400 (3)159
C16—H16B···O2vi0.972.563.441 (3)152
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3B⋯O7i 0.77 (2)2.46 (2)3.000 (2)129 (2)
N3—H3B⋯O4ii 0.77 (2)2.36 (2)3.032 (2)147 (2)
C14—H14B⋯O4ii 0.972.553.322 (3)136
O3—H3A⋯O60.821.772.590 (2)173
O6—H6A⋯N30.821.932.607 (2)140
C6—H6⋯O2iii 0.932.533.424 (3)161
C14—H14A⋯O5iv 0.972.493.403 (3)157
C15—H15B⋯O1v 0.972.483.400 (3)159
C16—H16B⋯O2vi 0.972.563.441 (3)152

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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