Literature DB >> 23476211

2-(2-Hy-droxy-propan-2-yl)-6-(prop-2-yn-yloxy)-1-benzofuran-3(2H)-one.

Henok H Kinfe1, Yonas H Belay, Zanele H Phasha.   

Abstract

In the title compound, C14H14O4, the prop-2-yn-yloxy O-C-C C plane [maximum deviation = 0.0116 (12) Å] forms a dihedral angle of 78.44 (9)° with the benzofuran-3(2H)-one ring system. In the crystal, mol-ecules are linked by O-H⋯O hydrogen bonds, forming a tape along the a-axis direction. C-H⋯O inter-actions are observed between the tapes.

Entities:  

Year:  2012        PMID: 23476211      PMCID: PMC3588975          DOI: 10.1107/S1600536812045606

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the development of hybrid drug candidates against tuberculosis, malaria and cancer, see: Morphy et al. (2004 ▶). For details of the synthesis of the title compound, see: Hoogendoorn et al. (2011 ▶).

Experimental

Crystal data

C14H14O4 M = 246.25 Triclinic, a = 5.4199 (2) Å b = 9.0785 (3) Å c = 12.3555 (4) Å α = 85.758 (2)° β = 80.455 (2)° γ = 81.829 (2)° V = 592.65 (4) Å3 Z = 2 Cu Kα radiation μ = 0.84 mm−1 T = 100 K 0.39 × 0.11 × 0.11 mm

Data collection

Bruker APEX DUO 4K CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.736, T max = 0.913 10266 measured reflections 1983 independent reflections 1888 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.082 S = 1.03 1983 reflections 166 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.17 e Å−3 Data collection: APEX2 (Bruker, 2011 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812045606/is5212sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812045606/is5212Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812045606/is5212Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H14O4Z = 2
Mr = 246.25F(000) = 260
Triclinic, P1Dx = 1.38 Mg m3
Hall symbol: -P 1Cu Kα radiation, λ = 1.54178 Å
a = 5.4199 (2) ÅCell parameters from 4605 reflections
b = 9.0785 (3) Åθ = 4.9–66.1°
c = 12.3555 (4) ŵ = 0.84 mm1
α = 85.758 (2)°T = 100 K
β = 80.455 (2)°Needle, colourless
γ = 81.829 (2)°0.39 × 0.11 × 0.11 mm
V = 592.65 (4) Å3
Bruker APEX DUO 4K CCD diffractometer1983 independent reflections
Incoatec Quazar Multilayer Mirror monochromator1888 reflections with I > 2σ(I)
Detector resolution: 8.4 pixels mm-1Rint = 0.025
φ and ω scansθmax = 66.3°, θmin = 4.9°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −4→6
Tmin = 0.736, Tmax = 0.913k = −10→10
10266 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.082H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0364P)2 + 0.2704P] where P = (Fo2 + 2Fc2)/3
1983 reflections(Δ/σ)max < 0.001
166 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.17 e Å3
Experimental. Analytical data: 1H NMR (CDCl3, 400 MHZ): δ 7.55 (d, 1H), 6.69 (s, 1H), 6.66 (s, 1H), 4.74 (s, 2H), 4.36 (s, 1H), 3.26 (s, 1H), 2.58 (s, 1H), 1.33 (s, 3H), 1.18 (s, 3H); 13C NMR (CDCl3, 400 MHZ): δ 199.0, 175.0, 166.2, 125.4, 115.5, 112.1, 97.4, 89.8, 72.3, 56.3, 25.9, 23.9.The intensity data was collected on a Bruker Apex DUO 4 K CCD diffractometer using an exposure time of 5 s/frame. A total of 4558 frames were collected with a frame width of 1° covering up to θ = 66.28° with 95.2% completeness accomplished.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2006 (3)0.84616 (15)0.02726 (11)0.0261 (3)
H10.10770.8209−0.02590.031*
C20.3167 (2)0.87773 (14)0.09371 (10)0.0223 (3)
C30.4670 (2)0.91785 (15)0.17253 (10)0.0223 (3)
H3A0.63870.92990.13390.027*
H3B0.38941.01480.20260.027*
C40.2852 (2)0.80294 (13)0.34321 (10)0.0172 (3)
C50.0548 (2)0.89754 (13)0.34541 (10)0.0189 (3)
H50.03090.96880.28660.023*
C6−0.1355 (2)0.88612 (13)0.43326 (10)0.0180 (3)
H6−0.29070.95040.43620.022*
C7−0.0975 (2)0.77883 (13)0.51799 (10)0.0167 (3)
C80.1301 (2)0.68501 (13)0.51207 (10)0.0164 (3)
C90.3268 (2)0.69443 (13)0.42660 (10)0.0177 (3)
H90.48220.63060.42460.021*
C10−0.2529 (2)0.73992 (13)0.61999 (10)0.0173 (3)
C11−0.0979 (2)0.60810 (13)0.67327 (10)0.0177 (3)
H11−0.18640.51810.67630.021*
C12−0.0406 (2)0.62882 (13)0.78842 (10)0.0183 (3)
C130.1469 (2)0.49897 (14)0.82127 (11)0.0237 (3)
H13A0.30490.49620.76930.036*
H13B0.07650.40550.82030.036*
H13C0.18020.51150.89540.036*
C14−0.2814 (2)0.64049 (15)0.87195 (10)0.0233 (3)
H14A−0.24380.66370.94320.035*
H14B−0.35040.54550.87930.035*
H14C−0.40520.71980.84720.035*
O10.05931 (15)0.76695 (9)0.78783 (7)0.0193 (2)
H0.20220.76120.74860.029*
O20.14038 (15)0.58334 (9)0.59873 (7)0.0187 (2)
O30.48574 (16)0.80822 (10)0.26152 (7)0.0215 (2)
O4−0.46595 (15)0.79629 (10)0.65811 (7)0.0215 (2)
U11U22U33U12U13U23
C10.0272 (7)0.0300 (7)0.0206 (7)−0.0034 (6)−0.0019 (5)−0.0033 (5)
C20.0241 (7)0.0221 (6)0.0176 (6)−0.0009 (5)0.0036 (5)0.0003 (5)
C30.0251 (7)0.0247 (7)0.0167 (6)−0.0065 (5)−0.0002 (5)0.0016 (5)
C40.0184 (6)0.0194 (6)0.0144 (6)−0.0047 (5)−0.0010 (5)−0.0043 (5)
C50.0222 (6)0.0188 (6)0.0161 (6)−0.0023 (5)−0.0050 (5)−0.0006 (5)
C60.0173 (6)0.0185 (6)0.0187 (6)−0.0003 (5)−0.0047 (5)−0.0033 (5)
C70.0163 (6)0.0180 (6)0.0166 (6)−0.0030 (4)−0.0035 (5)−0.0038 (5)
C80.0204 (6)0.0151 (6)0.0150 (6)−0.0034 (5)−0.0049 (5)−0.0024 (4)
C90.0171 (6)0.0186 (6)0.0175 (6)−0.0002 (5)−0.0034 (5)−0.0038 (5)
C100.0166 (6)0.0197 (6)0.0174 (6)−0.0050 (5)−0.0041 (5)−0.0041 (5)
C110.0161 (6)0.0187 (6)0.0176 (6)−0.0037 (5)0.0003 (5)−0.0010 (5)
C120.0184 (6)0.0195 (6)0.0171 (6)−0.0046 (5)−0.0021 (5)0.0010 (5)
C130.0242 (7)0.0239 (7)0.0220 (7)−0.0013 (5)−0.0043 (5)0.0033 (5)
C140.0214 (7)0.0302 (7)0.0175 (6)−0.0045 (5)−0.0013 (5)0.0024 (5)
O10.0183 (5)0.0207 (5)0.0188 (4)−0.0044 (3)−0.0002 (3)−0.0024 (3)
O20.0204 (5)0.0182 (4)0.0156 (4)0.0009 (3)−0.0002 (3)0.0006 (3)
O30.0197 (5)0.0272 (5)0.0155 (4)−0.0010 (3)0.0005 (3)0.0015 (3)
O40.0154 (5)0.0279 (5)0.0203 (5)−0.0017 (3)−0.0014 (3)−0.0012 (4)
C1—C21.187 (2)C9—H90.95
C1—H10.95C10—O41.2264 (15)
C2—C31.4647 (18)C10—C111.5338 (17)
C3—O31.4339 (15)C11—O21.4561 (14)
C3—H3A0.99C11—C121.5359 (17)
C3—H3B0.99C11—H111
C4—O31.3586 (14)C12—O11.4339 (14)
C4—C91.3952 (17)C12—C141.5198 (17)
C4—C51.4092 (18)C12—C131.5206 (17)
C5—C61.3767 (17)C13—H13A0.98
C5—H50.95C13—H13B0.98
C6—C71.3968 (17)C13—H13C0.98
C6—H60.95C14—H14A0.98
C7—C81.3906 (17)C14—H14B0.98
C7—C101.4454 (17)C14—H14C0.98
C8—O21.3640 (15)O1—H0.84
C8—C91.3777 (17)
C2—C1—H1180C7—C10—C11105.72 (10)
C1—C2—C3177.97 (13)O2—C11—C10105.17 (9)
O3—C3—C2112.50 (10)O2—C11—C12108.40 (9)
O3—C3—H3A109.1C10—C11—C12116.67 (10)
C2—C3—H3A109.1O2—C11—H11108.8
O3—C3—H3B109.1C10—C11—H11108.8
C2—C3—H3B109.1C12—C11—H11108.8
H3A—C3—H3B107.8O1—C12—C14106.41 (10)
O3—C4—C9113.90 (10)O1—C12—C13110.61 (10)
O3—C4—C5123.96 (11)C14—C12—C13110.22 (10)
C9—C4—C5122.14 (11)O1—C12—C11109.16 (9)
C6—C5—C4119.68 (11)C14—C12—C11110.66 (10)
C6—C5—H5120.2C13—C12—C11109.74 (10)
C4—C5—H5120.2C12—C13—H13A109.5
C5—C6—C7119.14 (11)C12—C13—H13B109.5
C5—C6—H6120.4H13A—C13—H13B109.5
C7—C6—H6120.4C12—C13—H13C109.5
C8—C7—C6119.71 (11)H13A—C13—H13C109.5
C8—C7—C10107.37 (10)H13B—C13—H13C109.5
C6—C7—C10132.92 (11)C12—C14—H14A109.5
O2—C8—C9123.28 (11)C12—C14—H14B109.5
O2—C8—C7113.74 (10)H14A—C14—H14B109.5
C9—C8—C7122.98 (11)C12—C14—H14C109.5
C8—C9—C4116.33 (11)H14A—C14—H14C109.5
C8—C9—H9121.8H14B—C14—H14C109.5
C4—C9—H9121.8C12—O1—H109.5
O4—C10—C7128.78 (11)C8—O2—C11107.95 (9)
O4—C10—C11125.50 (11)C4—O3—C3118.88 (9)
O3—C4—C5—C6−178.39 (10)O4—C10—C11—O2−179.31 (10)
C9—C4—C5—C61.43 (18)C7—C10—C11—O21.55 (12)
C4—C5—C6—C7−1.02 (17)O4—C10—C11—C12−59.16 (16)
C5—C6—C7—C8−0.40 (17)C7—C10—C11—C12121.70 (11)
C5—C6—C7—C10178.94 (12)O2—C11—C12—O168.57 (11)
C6—C7—C8—O2−178.57 (10)C10—C11—C12—O1−49.84 (13)
C10—C7—C8—O21.93 (14)O2—C11—C12—C14−174.64 (9)
C6—C7—C8—C91.55 (18)C10—C11—C12—C1466.94 (13)
C10—C7—C8—C9−177.94 (11)O2—C11—C12—C13−52.79 (12)
O2—C8—C9—C4178.99 (10)C10—C11—C12—C13−171.21 (10)
C7—C8—C9—C4−1.15 (18)C9—C8—O2—C11178.98 (10)
O3—C4—C9—C8179.49 (10)C7—C8—O2—C11−0.89 (13)
C5—C4—C9—C8−0.34 (17)C10—C11—O2—C8−0.46 (12)
C8—C7—C10—O4178.84 (12)C12—C11—O2—C8−125.94 (10)
C6—C7—C10—O4−0.6 (2)C9—C4—O3—C3−178.56 (10)
C8—C7—C10—C11−2.06 (12)C5—C4—O3—C31.28 (17)
C6—C7—C10—C11178.53 (12)C2—C3—O3—C4−76.90 (13)
D—H···AD—HH···AD···AD—H···A
O1—H···O4i0.842.012.8328 (12)167
C1—H1···O1ii0.952.453.3283 (16)154
C5—H5···O1iii0.952.523.3809 (15)152
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H⋯O4i 0.842.012.8328 (12)167
C1—H1⋯O1ii 0.952.453.3283 (16)154
C5—H5⋯O1iii 0.952.523.3809 (15)152

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

Review 1.  From magic bullets to designed multiple ligands.

Authors:  Richard Morphy; Corinne Kay; Zoran Rankovic
Journal:  Drug Discov Today       Date:  2004-08-01       Impact factor: 7.851

2.  Synthesis of pH-activatable red fluorescent BODIPY dyes with distinct functionalities.

Authors:  Sascha Hoogendoorn; Annet E M Blom; Lianne I Willems; Gijsbert A van der Marel; Herman S Overkleeft
Journal:  Org Lett       Date:  2011-09-26       Impact factor: 6.005

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  3 in total

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