Literature DB >> 23476202

6-[4-Chloro-2-(trifluoro-meth-yl)phen-yl]-3-fluoro-2-methyl-pyridine.

S Sreenivasa1, K E Manojkumar, P A Suchetan, N R Mohan, B S Palakshamurthy, T Srinivasan, D Velmurgan.   

Abstract

In the title compound, C13H8ClF4N, the dihedral angle between the benzene and pyridine rings is 59.8 (3)°. In the crystal, mol-ecules are stacked in columns along the b axis through weak C-H⋯π inter-actions.

Entities:  

Year:  2012        PMID: 23476202      PMCID: PMC3588966          DOI: 10.1107/S1600536812046211

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of pyridine derivatives, see: Patrick & Kinsmar (1996 ▶); Hishmat et al. (1990 ▶); Doshi et al. (1999 ▶); Bhatt et al. (2001 ▶).

Experimental

Crystal data

C13H8ClF4N M = 289.65 Monoclinic, a = 13.1813 (7) Å b = 4.5837 (3) Å c = 20.4448 (11) Å β = 92.441 (3)° V = 1234.14 (12) Å3 Z = 4 Mo Kα radiation μ = 0.34 mm−1 T = 293 K 0.2 × 0.18 × 0.16 mm

Data collection

Bruker APEXII CCD area-detector diffractometer 11077 measured reflections 3033 independent reflections 2116 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.129 S = 1.01 3033 reflections 173 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.30 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2004 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812046211/is5209sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812046211/is5209Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812046211/is5209Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H8ClF4NPrism
Mr = 289.65Dx = 1.559 Mg m3
Monoclinic, P21/nMelting point: 408 K
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 13.1813 (7) ÅCell parameters from 2116 reflections
b = 4.5837 (3) Åθ = 1.8–26.8°
c = 20.4448 (11) ŵ = 0.34 mm1
β = 92.441 (3)°T = 293 K
V = 1234.14 (12) Å3Prism, colourless
Z = 40.2 × 0.18 × 0.16 mm
F(000) = 584
Bruker APEXII CCD area-detector diffractometer2116 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.031
Graphite monochromatorθmax = 28.3°, θmin = 1.8°
Detector resolution: 1.20 pixels mm-1h = −17→17
multi–scank = −5→6
11077 measured reflectionsl = −27→27
3033 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.129H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0549P)2 + 0.4806P] where P = (Fo2 + 2Fc2)/3
3033 reflections(Δ/σ)max = 0.001
173 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.30 e Å3
0 constraints
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.83131 (5)0.3848 (2)0.03175 (3)0.0883 (3)
F11.12038 (13)1.0835 (4)0.09837 (7)0.0978 (6)
F21.18924 (9)0.8102 (3)0.17220 (10)0.0964 (5)
F31.11540 (11)1.2001 (3)0.19839 (7)0.0781 (4)
F41.09214 (11)1.1818 (4)0.46328 (6)0.0853 (5)
N10.93981 (11)1.0496 (3)0.31763 (7)0.0451 (3)
C10.87112 (13)0.6135 (5)0.21835 (9)0.0528 (5)
H10.83680.58830.25680.063*
C20.83018 (14)0.4976 (5)0.16091 (9)0.0589 (5)
H20.76930.3950.16050.071*
C30.88083 (15)0.5361 (5)0.10418 (9)0.0565 (5)
C40.96922 (14)0.6939 (5)0.10389 (9)0.0552 (5)
H41.00150.72390.06490.066*
C51.01029 (13)0.8085 (4)0.16185 (9)0.0472 (4)
C60.96206 (12)0.7668 (4)0.22062 (9)0.0445 (4)
C71.10812 (16)0.9742 (5)0.15823 (11)0.0609 (5)
C81.00181 (13)0.8725 (4)0.28603 (9)0.0453 (4)
C91.09464 (14)0.7800 (5)0.31331 (11)0.0587 (5)
H91.13490.65020.2910.07*
C101.12574 (16)0.8841 (5)0.37399 (11)0.0638 (6)
H101.18760.82820.39370.077*
C111.06333 (16)1.0706 (5)0.40409 (10)0.0571 (5)
C120.96959 (14)1.1523 (4)0.37664 (9)0.0485 (4)
C130.90004 (18)1.3525 (5)0.41073 (10)0.0642 (6)
H13A0.84211.39590.38230.096*
H13B0.93521.53010.4220.096*
H13C0.87791.26050.44980.096*
U11U22U33U12U13U23
Cl10.0773 (4)0.1319 (7)0.0551 (3)−0.0171 (4)−0.0033 (3)−0.0247 (4)
F10.1080 (12)0.1124 (13)0.0752 (9)−0.0472 (10)0.0308 (8)0.0014 (9)
F20.0459 (7)0.0725 (10)0.1719 (16)−0.0025 (6)0.0166 (8)−0.0082 (10)
F30.0911 (9)0.0542 (8)0.0897 (10)−0.0197 (7)0.0125 (7)−0.0126 (7)
F40.0926 (10)0.0965 (11)0.0645 (8)0.0001 (8)−0.0251 (7)−0.0226 (8)
N10.0467 (8)0.0453 (8)0.0433 (7)0.0016 (6)0.0034 (6)0.0002 (6)
C10.0444 (9)0.0704 (13)0.0438 (9)−0.0028 (9)0.0057 (7)0.0011 (9)
C20.0436 (9)0.0797 (15)0.0535 (11)−0.0116 (10)0.0012 (8)−0.0005 (10)
C30.0505 (10)0.0717 (14)0.0471 (10)0.0010 (10)0.0000 (8)−0.0079 (10)
C40.0539 (10)0.0649 (13)0.0477 (10)0.0011 (9)0.0122 (8)−0.0030 (9)
C50.0432 (9)0.0463 (10)0.0526 (10)0.0013 (8)0.0078 (7)−0.0038 (8)
C60.0410 (8)0.0463 (10)0.0464 (9)0.0061 (7)0.0032 (7)−0.0021 (8)
C70.0592 (12)0.0535 (12)0.0710 (13)−0.0077 (10)0.0164 (10)−0.0069 (11)
C80.0431 (9)0.0460 (10)0.0470 (9)0.0014 (7)0.0024 (7)−0.0006 (8)
C90.0483 (10)0.0615 (13)0.0656 (12)0.0120 (9)−0.0042 (9)−0.0081 (10)
C100.0507 (11)0.0709 (15)0.0684 (13)0.0043 (10)−0.0145 (9)−0.0026 (11)
C110.0626 (12)0.0567 (12)0.0508 (10)−0.0059 (10)−0.0099 (9)−0.0062 (9)
C120.0557 (10)0.0437 (10)0.0460 (9)−0.0040 (8)0.0030 (8)0.0001 (8)
C130.0785 (14)0.0619 (14)0.0526 (11)0.0043 (11)0.0078 (10)−0.0098 (10)
Cl1—C31.737 (2)C5—C71.501 (3)
F1—C71.339 (3)C6—C11.388 (3)
F2—C71.328 (3)C6—C51.396 (2)
F3—C71.322 (2)C8—C91.389 (2)
F4—C111.353 (2)C8—C61.496 (2)
N1—C81.338 (2)C9—C101.375 (3)
N1—C121.338 (2)C9—H90.93
C1—C21.378 (3)C10—H100.93
C1—H10.93C11—C101.352 (3)
C2—H20.93C11—C121.387 (3)
C3—C21.374 (3)C12—C131.491 (3)
C4—C31.372 (3)C13—H13A0.96
C4—H40.93C13—H13B0.96
C5—C41.385 (3)C13—H13C0.96
C8—N1—C12119.16 (15)F2—C7—C5112.85 (18)
C2—C1—C6121.99 (17)F1—C7—C5111.83 (18)
C2—C1—H1119N1—C8—C9122.48 (17)
C6—C1—H1119N1—C8—C6115.49 (15)
C3—C2—C1118.89 (18)C9—C8—C6121.94 (17)
C3—C2—H2120.6C10—C9—C8118.67 (19)
C1—C2—H2120.6C10—C9—H9120.7
C4—C3—C2120.98 (18)C8—C9—H9120.7
C4—C3—Cl1119.69 (15)C11—C10—C9117.78 (18)
C2—C3—Cl1119.33 (16)C11—C10—H10121.1
C3—C4—C5119.83 (17)C9—C10—H10121.1
C3—C4—H4120.1F4—C11—C10119.50 (18)
C5—C4—H4120.1F4—C11—C12118.13 (19)
C4—C5—C6120.57 (17)C10—C11—C12122.36 (18)
C4—C5—C7117.07 (17)N1—C12—C11119.46 (18)
C6—C5—C7122.37 (17)N1—C12—C13118.39 (17)
C1—C6—C5117.69 (17)C11—C12—C13122.15 (18)
C1—C6—C8117.57 (16)C12—C13—H13A109.5
C5—C6—C8124.74 (16)C12—C13—H13B109.5
F3—C7—F2105.85 (18)H13A—C13—H13B109.5
F3—C7—F1105.45 (18)C12—C13—H13C109.5
F2—C7—F1106.32 (18)H13A—C13—H13C109.5
F3—C7—C5113.91 (17)H13B—C13—H13C109.5
D—H···AD—HH···AD···AD—H···A
C13—H13B···Cg1i0.962.833.606 (2)138
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the N1/C8–C12 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C13—H13BCg1i 0.962.833.606 (2)138

Symmetry code: (i) .

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