Literature DB >> 23476195

4-Amino-pyridinium 2-chloro-4-nitro-benzoate monohydrate.

Kelsey L Savig1, Andreas Lemmerer.   

Abstract

In the title hydrated mol-ecular salt, C5H7N2(+)·C7H3ClNO4(-)·H2O, the ions and water mol-ecules assemble into ribbons of R6(5)(22) rings along the c axis via O(water)-H⋯O(-), N(+)-H⋯O(water) and N-H⋯O(-) hydrogen bonds. N-H⋯O(-) hydrogen bonds connect adjacent ribbons along the c-axis direction via R4(4)(12) rings, forming hydrogen-bonded layers. The CO2 and NO2 groups make dihedral angles of 81.8 (2) and 1.4 (2)°, respectively, with the ring in the anion.

Entities:  

Year:  2012        PMID: 23476195      PMCID: PMC3588959          DOI: 10.1107/S1600536812046077

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Lemmerer et al. (2010 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C5H7N2C7H3ClNO4 −·H2O M = 313.7 Monoclinic, a = 14.4500 (5) Å b = 14.3300 (5) Å c = 6.9918 (2) Å β = 97.804 (2)° V = 1434.37 (8) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 173 K 0.78 × 0.31 × 0.09 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: integration (XPREP; Bruker, 2004 ▶) T min = 0.896, T max = 0.977 14928 measured reflections 3456 independent reflections 2685 reflections with I > 2σ(I) R int = 0.061

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.122 S = 1.04 3456 reflections 210 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.5 e Å−3 Δρmin = −0.36 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT-Plus (Bruker, 2004 ▶); data reduction: SAINT-Plus and XPREP (Bruker 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812046077/fy2073sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812046077/fy2073Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812046077/fy2073Isup3.mol Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812046077/fy2073Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H7N2+·C7H3ClNO4·H2OF(000) = 648
Mr = 313.7Dx = 1.453 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4262 reflections
a = 14.4500 (5) Åθ = 2.8–27.8°
b = 14.3300 (5) ŵ = 0.29 mm1
c = 6.9918 (2) ÅT = 173 K
β = 97.804 (2)°Plate, colourless
V = 1434.37 (8) Å30.78 × 0.31 × 0.09 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer2685 reflections with I > 2σ(I)
ω scansRint = 0.061
Absorption correction: integration (XPREP; Bruker, 2004)θmax = 28°, θmin = 1.4°
Tmin = 0.896, Tmax = 0.977h = −19→19
14928 measured reflectionsk = −18→18
3456 independent reflectionsl = −8→9
Refinement on F20 restraints
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.043w = 1/[σ2(Fo2) + (0.0662P)2 + 0.1397P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.122(Δ/σ)max < 0.001
S = 1.04Δρmax = 0.5 e Å3
3456 reflectionsΔρmin = −0.36 e Å3
210 parameters
Experimental. Numerical integration absorption corrections based on indexed crystal faces were applied using the XPREP routine (Bruker, 2004)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C10.69246 (11)0.61389 (11)0.2594 (2)0.0261 (3)
C20.61757 (12)0.55610 (11)0.2858 (2)0.0271 (3)
C30.52758 (11)0.57500 (11)0.2008 (2)0.0284 (3)
H30.47720.53480.21880.034*
C40.51347 (11)0.65438 (12)0.0887 (2)0.0290 (4)
C50.58469 (12)0.71419 (12)0.0592 (2)0.0325 (4)
H50.57250.7687−0.01760.039*
C60.67437 (12)0.69317 (12)0.1438 (2)0.0311 (4)
H60.72450.73320.12320.037*
C70.79130 (11)0.59307 (11)0.3515 (2)0.0291 (3)
N10.41775 (10)0.67644 (11)0.0004 (2)0.0349 (3)
O10.84325 (9)0.55490 (9)0.24589 (19)0.0412 (3)
O20.81313 (9)0.61801 (10)0.52270 (17)0.0424 (3)
O30.35519 (9)0.62315 (10)0.0282 (2)0.0462 (3)
O40.40575 (10)0.74821 (11)−0.0962 (2)0.0513 (4)
Cl10.63660 (3)0.45679 (3)0.42817 (7)0.04119 (15)
C80.96351 (14)0.15836 (13)0.3659 (2)0.0361 (4)
H81.00190.10490.39360.043*
C91.00312 (12)0.24412 (13)0.3780 (2)0.0341 (4)
H91.06870.25060.41230.041*
C100.94613 (12)0.32426 (12)0.3393 (2)0.0293 (4)
C110.84995 (12)0.30971 (12)0.2835 (2)0.0309 (4)
H110.80950.36140.25270.037*
C120.81509 (13)0.22161 (13)0.2739 (2)0.0352 (4)
H120.750.21240.2370.042*
N20.87086 (12)0.14714 (11)0.3155 (2)0.0357 (3)
N30.98294 (12)0.40973 (11)0.3540 (2)0.0368 (4)
H20.8439 (17)0.0887 (18)0.322 (3)0.061 (7)*
H3A0.9432 (16)0.4610 (15)0.322 (3)0.045 (6)*
H3B1.0408 (17)0.4127 (15)0.391 (3)0.048 (6)*
O1W0.8108 (2)0.52435 (14)0.8618 (3)0.1094 (11)
H1W0.817 (2)0.541 (2)0.965 (5)0.080 (10)*
H2W0.806 (2)0.562 (2)0.781 (5)0.096 (11)*
U11U22U33U12U13U23
C10.0257 (8)0.0296 (8)0.0228 (7)0.0026 (6)0.0032 (6)−0.0001 (6)
C20.0310 (8)0.0261 (8)0.0245 (7)0.0017 (6)0.0048 (6)0.0017 (6)
C30.0268 (8)0.0306 (8)0.0281 (8)−0.0034 (6)0.0046 (6)−0.0036 (6)
C40.0241 (8)0.0377 (9)0.0244 (7)0.0046 (6)0.0007 (6)−0.0018 (6)
C50.0319 (9)0.0339 (9)0.0312 (8)0.0036 (7)0.0030 (7)0.0082 (7)
C60.0265 (9)0.0340 (9)0.0325 (8)−0.0007 (7)0.0033 (6)0.0062 (7)
C70.0260 (8)0.0281 (8)0.0319 (8)0.0004 (6)−0.0007 (6)0.0059 (6)
N10.0256 (8)0.0466 (9)0.0316 (7)0.0043 (6)−0.0001 (6)−0.0049 (7)
O10.0307 (7)0.0477 (8)0.0437 (7)0.0115 (6)−0.0002 (5)−0.0040 (6)
O20.0367 (7)0.0580 (8)0.0302 (6)−0.0009 (6)−0.0039 (5)−0.0001 (6)
O30.0254 (7)0.0589 (9)0.0530 (8)−0.0023 (6)0.0004 (6)−0.0042 (7)
O40.0382 (8)0.0584 (9)0.0541 (8)0.0136 (7)−0.0054 (6)0.0154 (7)
Cl10.0433 (3)0.0341 (2)0.0463 (3)0.00160 (18)0.0065 (2)0.01473 (18)
C80.0429 (11)0.0369 (9)0.0287 (8)0.0107 (8)0.0059 (7)0.0010 (7)
C90.0295 (9)0.0400 (10)0.0323 (8)0.0069 (7)0.0027 (7)0.0002 (7)
C100.0306 (9)0.0360 (9)0.0214 (7)0.0035 (7)0.0037 (6)−0.0002 (6)
C110.0282 (9)0.0381 (9)0.0262 (8)0.0056 (7)0.0033 (6)0.0018 (7)
C120.0316 (9)0.0472 (10)0.0266 (8)−0.0011 (7)0.0030 (7)0.0004 (7)
N20.0440 (9)0.0359 (8)0.0275 (7)−0.0008 (7)0.0060 (6)0.0002 (6)
N30.0289 (8)0.0361 (8)0.0435 (9)0.0021 (7)−0.0018 (7)−0.0013 (7)
O1W0.249 (4)0.0447 (10)0.0407 (10)0.0464 (14)0.0425 (14)0.0092 (9)
C1—C21.395 (2)C8—N21.347 (2)
C1—C61.398 (2)C8—C91.353 (3)
C1—C71.515 (2)C8—H80.95
C2—C31.381 (2)C9—C101.418 (2)
C2—Cl11.7369 (16)C9—H90.95
C3—C41.381 (2)C10—N31.334 (2)
C3—H30.95C10—C111.407 (2)
C4—C51.376 (2)C11—C121.358 (2)
C4—N11.471 (2)C11—H110.95
C5—C61.383 (2)C12—N21.345 (2)
C5—H50.95C12—H120.95
C6—H60.95N2—H20.93 (3)
C7—O21.248 (2)N3—H3A0.94 (2)
C7—O11.248 (2)N3—H3B0.84 (2)
N1—O31.219 (2)O1W—H1W0.75 (3)
N1—O41.230 (2)O1W—H2W0.78 (4)
C2—C1—C6118.13 (15)O4—N1—C4117.71 (15)
C2—C1—C7122.05 (14)N2—C8—C9121.43 (16)
C6—C1—C7119.83 (14)N2—C8—H8119.3
C3—C2—C1121.91 (15)C9—C8—H8119.3
C3—C2—Cl1118.28 (12)C8—C9—C10119.60 (17)
C1—C2—Cl1119.80 (12)C8—C9—H9120.2
C4—C3—C2117.63 (15)C10—C9—H9120.2
C4—C3—H3121.2N3—C10—C11121.74 (16)
C2—C3—H3121.2N3—C10—C9120.92 (16)
C5—C4—C3122.84 (15)C11—C10—C9117.33 (16)
C5—C4—N1118.88 (15)C12—C11—C10119.83 (16)
C3—C4—N1118.27 (15)C12—C11—H11120.1
C4—C5—C6118.46 (15)C10—C11—H11120.1
C4—C5—H5120.8N2—C12—C11121.31 (17)
C6—C5—H5120.8N2—C12—H12119.3
C5—C6—C1121.02 (16)C11—C12—H12119.3
C5—C6—H6119.5C12—N2—C8120.46 (16)
C1—C6—H6119.5C12—N2—H2118.9 (15)
O2—C7—O1126.79 (16)C8—N2—H2120.3 (15)
O2—C7—C1116.89 (15)C10—N3—H3A118.3 (13)
O1—C7—C1116.28 (14)C10—N3—H3B116.1 (15)
O3—N1—O4124.01 (15)H3A—N3—H3B126 (2)
O3—N1—C4118.28 (15)H1W—O1W—H2W117 (3)
C6—C1—C2—C30.4 (2)C2—C1—C7—O199.31 (18)
C7—C1—C2—C3−179.64 (14)C6—C1—C7—O1−80.7 (2)
C6—C1—C2—Cl1179.99 (12)C5—C4—N1—O3−179.69 (15)
C7—C1—C2—Cl10.0 (2)C3—C4—N1—O3−0.8 (2)
C1—C2—C3—C4−0.6 (2)C5—C4—N1—O4−0.2 (2)
Cl1—C2—C3—C4179.75 (12)C3—C4—N1—O4178.68 (15)
C2—C3—C4—C50.1 (2)N2—C8—C9—C100.8 (3)
C2—C3—C4—N1−178.79 (14)C8—C9—C10—N3178.61 (16)
C3—C4—C5—C60.8 (3)C8—C9—C10—C11−1.9 (2)
N1—C4—C5—C6179.59 (14)N3—C10—C11—C12−178.78 (16)
C4—C5—C6—C1−1.0 (3)C9—C10—C11—C121.8 (2)
C2—C1—C6—C50.5 (2)C10—C11—C12—N2−0.5 (2)
C7—C1—C6—C5−179.52 (15)C11—C12—N2—C8−0.8 (2)
C2—C1—C7—O2−82.6 (2)C9—C8—N2—C120.6 (2)
C6—C1—C7—O297.40 (18)
D—H···AD—HH···AD···AD—H···A
N2—H2···O1Wi0.93 (3)1.72 (3)2.641 (2)170 (2)
N3—H3A···O10.94 (2)1.99 (2)2.926 (2)171.1 (19)
N3—H3B···O2ii0.84 (2)2.16 (3)2.982 (2)165 (2)
O1W—H1W···O1iii0.75 (3)1.96 (3)2.698 (2)166 (3)
O1W—H2W···O20.78 (4)1.99 (4)2.729 (2)158 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2⋯O1W i 0.93 (3)1.72 (3)2.641 (2)170 (2)
N3—H3A⋯O10.94 (2)1.99 (2)2.926 (2)171.1 (19)
N3—H3B⋯O2ii 0.84 (2)2.16 (3)2.982 (2)165 (2)
O1W—H1W⋯O1iii 0.75 (3)1.96 (3)2.698 (2)166 (3)
O1W—H2W⋯O20.78 (4)1.99 (4)2.729 (2)158 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, characterization, and molecular modeling of a pharmaceutical co-crystal: (2-chloro-4-nitrobenzoic acid):(nicotinamide).

Authors:  Andreas Lemmerer; Catharine Esterhuysen; Joel Bernstein
Journal:  J Pharm Sci       Date:  2010-09       Impact factor: 3.534

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.