Literature DB >> 23476191

4-Phenyl-1H-1,5-benzodiazepin-2(3H)-one.

Mehmet Akkurt1, Alan R Kennedy, Sabry H H Younes, Shaaban K Mohamed, Antar A Abdelhamid.   

Abstract

In the title compound, C15H12N2O, the phenyl ring makes a dihedral angle of 32.45 (9)° with the benzene ring of the 1,5-benzodiazepin-2-one unit. The seven-membered ring adopts a boat conformation with the methyl-ene group as the prow and the fused benzene-ring C atoms as the stern. In the crystal, inversion dimers linked by pairs of N-H⋯O hydrogen bonds generate R2(2)(8) loops. The dimers are further linked by C-H⋯O hydrogen bonds, so forming a column along the a-axis direction.

Entities:  

Year:  2012        PMID: 23476191      PMCID: PMC3588955          DOI: 10.1107/S160053681204651X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to benzodiazepine compounds, see: McKernan (2000 ▶); Thakur et al. (2003 ▶). For related structures, see: Benelbaghdadi et al. (2003 ▶); Višnjevac et al. (2002 ▶).

Experimental

Crystal data

C15H12N2O M = 236.27 Triclinic, a = 4.6894 (5) Å b = 10.8353 (13) Å c = 11.7540 (13) Å α = 77.721 (10)° β = 83.805 (9)° γ = 82.112 (10)° V = 576.13 (12) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 123 K 0.35 × 0.09 × 0.06 mm

Data collection

Oxford Diffraction Xcalibur Eos CCD diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.928, T max = 1.000 4335 measured reflections 2584 independent reflections 1830 reflections with I > 2σI R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.140 S = 1.02 2584 reflections 167 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.29 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681204651X/hb6983sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681204651X/hb6983Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681204651X/hb6983Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H12N2OZ = 2
Mr = 236.27F(000) = 248
Triclinic, P1Dx = 1.362 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 4.6894 (5) ÅCell parameters from 1808 reflections
b = 10.8353 (13) Åθ = 3.6–28.6°
c = 11.7540 (13) ŵ = 0.09 mm1
α = 77.721 (10)°T = 123 K
β = 83.805 (9)°Rod, colourless
γ = 82.112 (10)°0.35 × 0.09 × 0.06 mm
V = 576.13 (12) Å3
Oxford Diffraction Xcalibur Eos CCD diffractometer2584 independent reflections
Radiation source: Enhance (Mo) X-ray Source1830 reflections with I > 2σI
Graphite monochromatorRint = 0.034
Detector resolution: 16.0727 pixels mm-1θmax = 28.7°, θmin = 3.6°
ω scansh = −5→5
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −13→14
Tmin = 0.928, Tmax = 1.000l = −14→14
4335 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.140H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0553P)2 + 0.0566P] where P = (Fo2 + 2Fc2)/3
2584 reflections(Δ/σ)max < 0.001
167 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.29 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.5985 (3)0.83316 (12)−0.01502 (12)0.0240 (4)
N10.2761 (3)0.91004 (15)0.11765 (15)0.0196 (5)
N20.1807 (3)0.67999 (15)0.30340 (14)0.0208 (5)
C10.2541 (4)0.69700 (17)0.09252 (17)0.0198 (6)
C20.3919 (4)0.81833 (18)0.05942 (17)0.0189 (6)
C30.0429 (4)0.90428 (18)0.20457 (17)0.0191 (6)
C4−0.1284 (4)1.01875 (18)0.21167 (18)0.0223 (6)
C5−0.3538 (4)1.0235 (2)0.29689 (19)0.0265 (7)
C6−0.4128 (4)0.9137 (2)0.37674 (19)0.0264 (7)
C7−0.2380 (4)0.80156 (19)0.37327 (18)0.0238 (6)
C8−0.0060 (4)0.79387 (18)0.28803 (17)0.0198 (6)
C90.3135 (4)0.63570 (17)0.21650 (17)0.0188 (6)
C100.5331 (4)0.52265 (17)0.24188 (17)0.0187 (6)
C110.7291 (4)0.48274 (18)0.15578 (18)0.0219 (6)
C120.9357 (4)0.37853 (19)0.18455 (19)0.0255 (7)
C130.9510 (4)0.31567 (19)0.29879 (19)0.0263 (7)
C140.7573 (4)0.35380 (19)0.38557 (19)0.0265 (7)
C150.5496 (4)0.45695 (18)0.35707 (18)0.0230 (6)
H1A0.335000.638900.039400.0240*
H1B0.043200.715400.085800.0240*
H1N0.324 (4)0.990 (2)0.089 (2)0.038 (6)*
H4−0.089401.094100.157300.0270*
H5−0.468901.101900.301000.0320*
H6−0.573000.916200.433400.0320*
H7−0.275200.727600.429900.0290*
H110.721900.526800.076900.0260*
H121.066700.350700.125100.0310*
H131.095200.245700.318200.0320*
H140.766600.309600.464300.0320*
H150.416900.483200.416800.0280*
U11U22U33U12U13U23
O10.0232 (7)0.0258 (8)0.0206 (8)−0.0022 (6)0.0039 (6)−0.0025 (6)
N10.0205 (8)0.0168 (8)0.0207 (10)−0.0034 (6)0.0005 (7)−0.0021 (7)
N20.0188 (8)0.0212 (9)0.0216 (10)−0.0027 (6)0.0008 (6)−0.0033 (7)
C10.0198 (9)0.0200 (10)0.0200 (11)−0.0020 (7)−0.0025 (7)−0.0048 (8)
C20.0188 (9)0.0197 (10)0.0175 (11)−0.0005 (7)−0.0061 (7)−0.0008 (8)
C30.0151 (9)0.0241 (10)0.0199 (11)−0.0041 (7)−0.0007 (7)−0.0079 (8)
C40.0225 (10)0.0191 (10)0.0251 (12)−0.0032 (8)−0.0028 (8)−0.0033 (8)
C50.0205 (10)0.0295 (11)0.0309 (13)0.0017 (8)−0.0038 (8)−0.0110 (10)
C60.0183 (10)0.0351 (12)0.0276 (12)−0.0023 (8)0.0015 (8)−0.0125 (10)
C70.0189 (10)0.0285 (11)0.0239 (12)−0.0061 (8)0.0007 (8)−0.0043 (9)
C80.0161 (9)0.0224 (10)0.0221 (11)−0.0028 (7)−0.0028 (8)−0.0065 (8)
C90.0189 (9)0.0197 (10)0.0183 (11)−0.0057 (7)−0.0010 (7)−0.0028 (8)
C100.0178 (9)0.0188 (10)0.0211 (11)−0.0047 (7)−0.0022 (7)−0.0054 (8)
C110.0233 (10)0.0239 (11)0.0188 (11)−0.0049 (8)−0.0010 (8)−0.0042 (8)
C120.0221 (10)0.0271 (11)0.0284 (13)−0.0021 (8)0.0020 (8)−0.0106 (9)
C130.0207 (10)0.0248 (11)0.0336 (13)−0.0003 (8)−0.0039 (8)−0.0068 (9)
C140.0278 (11)0.0270 (11)0.0229 (12)−0.0022 (8)−0.0033 (8)−0.0012 (9)
C150.0232 (10)0.0249 (11)0.0206 (11)−0.0019 (8)−0.0008 (8)−0.0053 (9)
O1—C21.237 (2)C10—C111.390 (3)
N1—C21.346 (3)C11—C121.391 (3)
N1—C31.412 (3)C12—C131.375 (3)
N2—C81.402 (3)C13—C141.383 (3)
N2—C91.285 (3)C14—C151.387 (3)
N1—H1N0.91 (2)C1—H1A0.9900
C1—C91.506 (3)C1—H1B0.9900
C1—C21.503 (3)C4—H40.9500
C3—C81.405 (3)C5—H50.9500
C3—C41.395 (3)C6—H60.9500
C4—C51.379 (3)C7—H70.9500
C5—C61.390 (3)C11—H110.9500
C6—C71.375 (3)C12—H120.9500
C7—C81.404 (3)C13—H130.9500
C9—C101.488 (3)C14—H140.9500
C10—C151.394 (3)C15—H150.9500
C2—N1—C3127.34 (17)C12—C13—C14120.27 (19)
C8—N2—C9122.03 (17)C13—C14—C15119.7 (2)
C2—N1—H1N117.5 (14)C10—C15—C14120.81 (19)
C3—N1—H1N113.8 (13)C2—C1—H1A110.00
C2—C1—C9108.46 (16)C2—C1—H1B110.00
O1—C2—C1122.81 (17)C9—C1—H1A110.00
O1—C2—N1122.06 (18)C9—C1—H1B110.00
N1—C2—C1115.13 (16)H1A—C1—H1B108.00
N1—C3—C8123.51 (17)C3—C4—H4120.00
C4—C3—C8119.81 (18)C5—C4—H4120.00
N1—C3—C4116.43 (17)C4—C5—H5120.00
C3—C4—C5120.61 (19)C6—C5—H5120.00
C4—C5—C6120.12 (19)C5—C6—H6120.00
C5—C6—C7119.63 (19)C7—C6—H6120.00
C6—C7—C8121.54 (19)C6—C7—H7119.00
C3—C8—C7118.18 (18)C8—C7—H7119.00
N2—C8—C7116.13 (17)C10—C11—H11120.00
N2—C8—C3125.11 (17)C12—C11—H11120.00
N2—C9—C1121.42 (17)C11—C12—H12120.00
N2—C9—C10117.88 (17)C13—C12—H12120.00
C1—C9—C10120.69 (16)C12—C13—H13120.00
C9—C10—C11122.52 (18)C14—C13—H13120.00
C11—C10—C15118.72 (18)C13—C14—H14120.00
C9—C10—C15118.73 (17)C15—C14—H14120.00
C10—C11—C12120.32 (19)C10—C15—H15120.00
C11—C12—C13120.21 (19)C14—C15—H15120.00
C3—N1—C2—O1−179.53 (18)C3—C4—C5—C6−0.1 (3)
C3—N1—C2—C1−0.2 (3)C4—C5—C6—C72.7 (3)
C2—N1—C3—C4−149.39 (19)C5—C6—C7—C8−2.3 (3)
C2—N1—C3—C836.4 (3)C6—C7—C8—N2171.13 (18)
C9—N2—C8—C3−40.1 (3)C6—C7—C8—C3−0.6 (3)
C9—N2—C8—C7148.81 (19)N2—C9—C10—C11−166.64 (18)
C8—N2—C9—C1−6.0 (3)N2—C9—C10—C1511.0 (3)
C8—N2—C9—C10172.89 (17)C1—C9—C10—C1112.3 (3)
C9—C1—C2—O1112.8 (2)C1—C9—C10—C15−170.04 (17)
C9—C1—C2—N1−66.6 (2)C9—C10—C11—C12178.16 (18)
C2—C1—C9—N274.3 (2)C15—C10—C11—C120.5 (3)
C2—C1—C9—C10−104.6 (2)C9—C10—C15—C14−177.71 (18)
N1—C3—C4—C5−177.32 (18)C11—C10—C15—C140.0 (3)
C8—C3—C4—C5−2.9 (3)C10—C11—C12—C13−1.2 (3)
N1—C3—C8—N26.3 (3)C11—C12—C13—C141.4 (3)
N1—C3—C8—C7177.21 (18)C12—C13—C14—C15−0.9 (3)
C4—C3—C8—N2−167.75 (18)C13—C14—C15—C100.1 (3)
C4—C3—C8—C73.2 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O1i0.91 (2)1.99 (2)2.900 (2)175 (2)
C1—H1B···O1ii0.992.563.468 (2)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N⋯O1i 0.91 (2)1.99 (2)2.900 (2)175 (2)
C1—H1B⋯O1ii 0.992.563.468 (2)153

Symmetry codes: (i) ; (ii) .

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1.  Topological modeling of benzodiazepine receptor binding.

Authors:  Abhilash Thakur; Mamta Thakur; Padmakar Khadikar
Journal:  Bioorg Med Chem       Date:  2003-11-17       Impact factor: 3.641

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Sedative but not anxiolytic properties of benzodiazepines are mediated by the GABA(A) receptor alpha1 subtype.

Authors:  R M McKernan; T W Rosahl; D S Reynolds; C Sur; K A Wafford; J R Atack; S Farrar; J Myers; G Cook; P Ferris; L Garrett; L Bristow; G Marshall; A Macaulay; N Brown; O Howell; K W Moore; R W Carling; L J Street; J L Castro; C I Ragan; G R Dawson; P J Whiting
Journal:  Nat Neurosci       Date:  2000-06       Impact factor: 24.884

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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1.  Structure of 1,5-benzodiazepinones in the solid state and in solution: Effect of the fluorination in the six-membered ring.

Authors:  Marta Pérez-Torralba; Rosa M Claramunt; M Angeles García; Concepción López; M Carmen Torralba; M Rosario Torres; Ibon Alkorta; José Elguero
Journal:  Beilstein J Org Chem       Date:  2013-10-21       Impact factor: 2.883

  1 in total

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