| Literature DB >> 23476184 |
S Sreenivasa1, K E Manojkumar, P A Suchetan, N R Mohan, B S Palakshamurthy.
Abstract
In the title compound, C10H20N4O3, the piperazine ring adopts a chair conformation. The mol-ecule adopts an E conformation across the C=N double bond, with the -OH group and the piperazine ring trans to one another. Further, the H atom of the hy-droxy group is directed away from the NH2 group. An intra-molecular N-H⋯O contact occurs involving the NH2 group and the oxime O atom. In the crystal, mol-ecules are linked via strong N-H⋯O and O-H⋯N hydrogen bonds with alternating R2(2)(6) and C(9) motifs into tetra-meric units forming R4(4)(28) motifs.Entities:
Year: 2012 PMID: 23476184 PMCID: PMC3588948 DOI: 10.1107/S1600536812046223
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H20N4O3 | |
| prism | |
| Triclinic, | |
| Hall symbol: -P 1 | Melting point: 463 K |
| Mo | |
| Cell parameters from 1632 reflections | |
| θ = 25° | |
| α = 109.451 (7)° | µ = 0.10 mm−1 |
| β = 99.540 (7)° | |
| γ = 96.474 (7)° | Prism, colorless |
| 0.22 × 0.16 × 0.1 mm | |
| Bruker SMART X2S diffractometer | 1632 reflections with |
| Radiation source: fine-focus sealed tube | |
| Graphite monochromator | θmax = 25.0°, θmin = 2.5° |
| multi–scan | |
| 6407 measured reflections | |
| 2218 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2218 reflections | (Δ/σ)max < 0.001 |
| 162 parameters | Δρmax = 0.21 e Å−3 |
| 0 restraints | Δρmin = −0.20 e Å−3 |
| 0 constraints |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C8 | −0.0609 (3) | 0.4383 (3) | 0.7235 (3) | 0.0705 (7) | |
| H8A | −0.1504 | 0.3592 | 0.7258 | 0.106* | |
| H8B | 0.0275 | 0.4655 | 0.8107 | 0.106* | |
| H8C | −0.0177 | 0.3931 | 0.6354 | 0.106* | |
| C7 | −0.1275 (2) | 0.5921 (2) | 0.7215 (2) | 0.0452 (5) | |
| O3 | 0.02502 (15) | 0.69800 (15) | 0.71797 (16) | 0.0449 (4) | |
| C6 | 0.0186 (2) | 0.8470 (2) | 0.7099 (2) | 0.0363 (4) | |
| N4 | 0.17149 (18) | 0.92339 (18) | 0.70828 (17) | 0.0379 (4) | |
| C3 | 0.3293 (2) | 0.8718 (2) | 0.7533 (2) | 0.0386 (5) | |
| H3A | 0.3094 | 0.7539 | 0.7291 | 0.046* | |
| H3B | 0.3705 | 0.9241 | 0.8606 | 0.046* | |
| C2 | 0.4601 (2) | 0.9178 (2) | 0.6738 (2) | 0.0426 (5) | |
| H2A | 0.5652 | 0.8871 | 0.7081 | 0.051* | |
| H2B | 0.423 | 0.8574 | 0.5672 | 0.051* | |
| N3 | 0.48827 (18) | 1.09515 (18) | 0.70205 (16) | 0.0380 (4) | |
| C1 | 0.5834 (2) | 1.1978 (2) | 0.8426 (2) | 0.0372 (5) | |
| C10 | −0.1871 (3) | 0.6755 (3) | 0.8630 (3) | 0.0710 (7) | |
| H10A | −0.2858 | 0.6076 | 0.866 | 0.106* | |
| H10B | −0.2133 | 0.7796 | 0.864 | 0.106* | |
| H10C | −0.0999 | 0.6921 | 0.9486 | 0.106* | |
| O2 | −0.10816 (16) | 0.90611 (16) | 0.70148 (16) | 0.0489 (4) | |
| N2 | 0.7249 (2) | 1.1515 (2) | 0.8972 (2) | 0.0500 (5) | |
| C5 | 0.3302 (2) | 1.1390 (2) | 0.6480 (2) | 0.0437 (5) | |
| H5A | 0.2963 | 1.083 | 0.5405 | 0.052* | |
| H5B | 0.3481 | 1.2561 | 0.6682 | 0.052* | |
| C4 | 0.1884 (2) | 1.0956 (2) | 0.7193 (2) | 0.0422 (5) | |
| H4A | 0.2114 | 1.1666 | 0.8236 | 0.051* | |
| H4B | 0.0835 | 1.1134 | 0.6693 | 0.051* | |
| C9 | −0.2609 (3) | 0.5532 (3) | 0.5819 (3) | 0.0623 (6) | |
| H9A | −0.3586 | 0.4846 | 0.5859 | 0.093* | |
| H9B | −0.2185 | 0.4968 | 0.496 | 0.093* | |
| H9C | −0.2907 | 0.6533 | 0.5747 | 0.093* | |
| O1 | 0.6559 (2) | 1.42316 (18) | 1.05009 (17) | 0.0655 (5) | |
| H1 | 0.6236 | 1.5071 | 1.0951 | 0.098* | |
| N1 | 0.5327 (2) | 1.33013 (19) | 0.91361 (19) | 0.0483 (5) | |
| H2C | 0.776 (3) | 1.084 (3) | 0.835 (3) | 0.061 (7)* | |
| H2D | 0.789 (3) | 1.232 (3) | 0.986 (3) | 0.076 (8)* |
| C8 | 0.0538 (14) | 0.0579 (14) | 0.113 (2) | 0.0029 (12) | 0.0172 (14) | 0.0500 (15) |
| C7 | 0.0329 (10) | 0.0476 (12) | 0.0584 (13) | −0.0013 (9) | 0.0116 (9) | 0.0252 (10) |
| O3 | 0.0339 (7) | 0.0396 (8) | 0.0685 (9) | 0.0052 (6) | 0.0167 (7) | 0.0264 (7) |
| C6 | 0.0348 (10) | 0.0372 (10) | 0.0377 (10) | 0.0091 (8) | 0.0113 (8) | 0.0119 (8) |
| N4 | 0.0307 (8) | 0.0338 (8) | 0.0539 (10) | 0.0079 (6) | 0.0134 (7) | 0.0191 (7) |
| C3 | 0.0327 (10) | 0.0316 (10) | 0.0541 (12) | 0.0074 (8) | 0.0106 (9) | 0.0176 (9) |
| C2 | 0.0378 (11) | 0.0360 (10) | 0.0500 (12) | 0.0067 (8) | 0.0149 (9) | 0.0077 (9) |
| N3 | 0.0399 (9) | 0.0358 (9) | 0.0411 (9) | 0.0045 (7) | 0.0144 (7) | 0.0153 (7) |
| C1 | 0.0357 (10) | 0.0344 (10) | 0.0457 (11) | 0.0046 (8) | 0.0150 (9) | 0.0173 (9) |
| C10 | 0.0646 (15) | 0.0950 (19) | 0.0633 (15) | 0.0070 (14) | 0.0278 (13) | 0.0369 (14) |
| O2 | 0.0332 (8) | 0.0476 (8) | 0.0696 (10) | 0.0143 (6) | 0.0153 (7) | 0.0214 (7) |
| N2 | 0.0422 (10) | 0.0483 (11) | 0.0554 (12) | 0.0131 (9) | 0.0093 (9) | 0.0125 (9) |
| C5 | 0.0481 (12) | 0.0424 (11) | 0.0436 (11) | 0.0037 (9) | 0.0060 (9) | 0.0225 (9) |
| C4 | 0.0390 (11) | 0.0326 (10) | 0.0571 (12) | 0.0106 (8) | 0.0091 (9) | 0.0182 (9) |
| C9 | 0.0512 (13) | 0.0536 (13) | 0.0695 (16) | −0.0039 (11) | 0.0003 (12) | 0.0164 (12) |
| O1 | 0.0646 (10) | 0.0469 (9) | 0.0624 (10) | 0.0096 (8) | −0.0060 (8) | 0.0004 (7) |
| N1 | 0.0436 (10) | 0.0355 (9) | 0.0547 (11) | 0.0041 (8) | 0.0012 (8) | 0.0073 (8) |
| C8—C7 | 1.517 (3) | N3—C5 | 1.457 (2) |
| C8—H8A | 0.96 | C1—N1 | 1.292 (2) |
| C8—H8B | 0.96 | C1—N2 | 1.356 (3) |
| C8—H8C | 0.96 | C10—H10A | 0.96 |
| C7—O3 | 1.484 (2) | C10—H10B | 0.96 |
| C7—C9 | 1.506 (3) | C10—H10C | 0.96 |
| C7—C10 | 1.515 (3) | N2—H2C | 0.89 (3) |
| O3—C6 | 1.343 (2) | N2—H2D | 0.94 (3) |
| C6—O2 | 1.216 (2) | C5—C4 | 1.522 (3) |
| C6—N4 | 1.358 (2) | C5—H5A | 0.97 |
| N4—C3 | 1.465 (2) | C5—H5B | 0.97 |
| N4—C4 | 1.470 (2) | C4—H4A | 0.97 |
| C3—C2 | 1.514 (3) | C4—H4B | 0.97 |
| C3—H3A | 0.97 | C9—H9A | 0.96 |
| C3—H3B | 0.97 | C9—H9B | 0.96 |
| C2—N3 | 1.473 (2) | C9—H9C | 0.96 |
| C2—H2A | 0.97 | O1—N1 | 1.447 (2) |
| C2—H2B | 0.97 | O1—H1 | 0.82 |
| N3—C1 | 1.398 (2) | ||
| C7—C8—H8A | 109.5 | C5—N3—C2 | 108.79 (15) |
| C7—C8—H8B | 109.5 | N1—C1—N2 | 123.51 (19) |
| H8A—C8—H8B | 109.5 | N1—C1—N3 | 119.03 (17) |
| C7—C8—H8C | 109.5 | N2—C1—N3 | 117.45 (17) |
| H8A—C8—H8C | 109.5 | C7—C10—H10A | 109.5 |
| H8B—C8—H8C | 109.5 | C7—C10—H10B | 109.5 |
| O3—C7—C9 | 110.52 (16) | H10A—C10—H10B | 109.5 |
| O3—C7—C10 | 109.00 (17) | C7—C10—H10C | 109.5 |
| C9—C7—C10 | 112.76 (19) | H10A—C10—H10C | 109.5 |
| O3—C7—C8 | 101.95 (15) | H10B—C10—H10C | 109.5 |
| C9—C7—C8 | 110.19 (18) | C1—N2—H2C | 119.9 (15) |
| C10—C7—C8 | 111.90 (18) | C1—N2—H2D | 112.7 (15) |
| C6—O3—C7 | 121.19 (14) | H2C—N2—H2D | 120 (2) |
| O2—C6—O3 | 124.82 (16) | N3—C5—C4 | 113.42 (14) |
| O2—C6—N4 | 123.46 (17) | N3—C5—H5A | 108.9 |
| O3—C6—N4 | 111.70 (15) | C4—C5—H5A | 108.9 |
| C6—N4—C3 | 123.10 (15) | N3—C5—H5B | 108.9 |
| C6—N4—C4 | 117.64 (15) | C4—C5—H5B | 108.9 |
| C3—N4—C4 | 115.06 (15) | H5A—C5—H5B | 107.7 |
| N4—C3—C2 | 110.37 (15) | N4—C4—C5 | 110.69 (15) |
| N4—C3—H3A | 109.6 | N4—C4—H4A | 109.5 |
| C2—C3—H3A | 109.6 | C5—C4—H4A | 109.5 |
| N4—C3—H3B | 109.6 | N4—C4—H4B | 109.5 |
| C2—C3—H3B | 109.6 | C5—C4—H4B | 109.5 |
| H3A—C3—H3B | 108.1 | H4A—C4—H4B | 108.1 |
| N3—C2—C3 | 111.33 (14) | C7—C9—H9A | 109.5 |
| N3—C2—H2A | 109.4 | C7—C9—H9B | 109.5 |
| C3—C2—H2A | 109.4 | H9A—C9—H9B | 109.5 |
| N3—C2—H2B | 109.4 | C7—C9—H9C | 109.5 |
| C3—C2—H2B | 109.4 | H9A—C9—H9C | 109.5 |
| H2A—C2—H2B | 108 | H9B—C9—H9C | 109.5 |
| C1—N3—C5 | 117.38 (15) | N1—O1—H1 | 109.5 |
| C1—N3—C2 | 116.57 (15) | C1—N1—O1 | 109.58 (16) |
| C9—C7—O3—C6 | 60.5 (2) | C3—C2—N3—C5 | −59.90 (19) |
| C10—C7—O3—C6 | −64.0 (2) | C5—N3—C1—N1 | −3.9 (2) |
| C8—C7—O3—C6 | 177.58 (17) | C2—N3—C1—N1 | −135.54 (18) |
| C7—O3—C6—O2 | −1.7 (3) | C5—N3—C1—N2 | 175.79 (15) |
| C7—O3—C6—N4 | 179.86 (15) | C2—N3—C1—N2 | 44.1 (2) |
| O2—C6—N4—C3 | 165.07 (18) | C1—N3—C5—C4 | −77.5 (2) |
| O3—C6—N4—C3 | −16.5 (2) | C2—N3—C5—C4 | 57.6 (2) |
| O2—C6—N4—C4 | 9.3 (3) | C6—N4—C4—C5 | −154.43 (16) |
| O3—C6—N4—C4 | −172.28 (15) | C3—N4—C4—C5 | 47.9 (2) |
| C6—N4—C3—C2 | 152.67 (16) | N3—C5—C4—N4 | −51.3 (2) |
| C4—N4—C3—C2 | −51.0 (2) | N2—C1—N1—O1 | 4.7 (3) |
| N4—C3—C2—N3 | 56.6 (2) | N3—C1—N1—O1 | −175.65 (15) |
| C3—C2—N3—C1 | 75.6 (2) |
| H··· | ||||
| N2—H2 | 0.94 (3) | 2.08 (3) | 2.538 (2) | 108.3 (19) |
| N2—H2 | 0.89 (3) | 2.10 (3) | 2.988 (2) | 173 (3) |
| O1—H1···N1ii | 0.82 | 2.04 | 2.764 (3) | 147 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H2 | 0.94 (3) | 2.08 (3) | 2.538 (2) | 108.3 (19) |
| N2—H2 | 0.89 (3) | 2.10 (3) | 2.988 (2) | 173 (3) |
| O1—H1⋯N1ii | 0.82 | 2.04 | 2.764 (3) | 147 |
Symmetry codes: (i) ; (ii) .