Literature DB >> 23476184

(E)-tert-Butyl 4-(N'-hy-droxy-carbam--imid-o-yl)piperazine-1-carboxyl-ate.

S Sreenivasa1, K E Manojkumar, P A Suchetan, N R Mohan, B S Palakshamurthy.   

Abstract

In the title compound, C10H20N4O3, the piperazine ring adopts a chair conformation. The mol-ecule adopts an E conformation across the C=N double bond, with the -OH group and the piperazine ring trans to one another. Further, the H atom of the hy-droxy group is directed away from the NH2 group. An intra-molecular N-H⋯O contact occurs involving the NH2 group and the oxime O atom. In the crystal, mol-ecules are linked via strong N-H⋯O and O-H⋯N hydrogen bonds with alternating R2(2)(6) and C(9) motifs into tetra-meric units forming R4(4)(28) motifs.

Entities:  

Year:  2012        PMID: 23476184      PMCID: PMC3588948          DOI: 10.1107/S1600536812046223

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, characterization and biological activity of piperazine and its derivatives, see: Gan et al. (2009a ▶,b ▶); Willems & Ilzerman (2010 ▶). For a related structure, see: Gowda et al. (2009 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶); Etter (1990 ▶).

Experimental

Crystal data

C10H20N4O3 M = 244.3 Triclinic, a = 8.1923 (17) Å b = 8.7859 (16) Å c = 9.714 (2) Å α = 109.451 (7)° β = 99.540 (7)° γ = 96.474 (7)° V = 639.5 (2) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 300 K 0.22 × 0.16 × 0.1 mm

Data collection

Bruker SMART X2S diffractometer 6407 measured reflections 2218 independent reflections 1632 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.130 S = 1.05 2218 reflections 162 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.20 e Å−3 Data collection: SMART (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2004 ▶); data reduction: SAINT-Plus and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812046223/zj2096sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812046223/zj2096Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812046223/zj2096Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H20N4O3F(000) = 264
Mr = 244.3prism
Triclinic, P1Dx = 1.269 Mg m3
Hall symbol: -P 1Melting point: 463 K
a = 8.1923 (17) ÅMo Kα radiation, λ = 0.71073 Å
b = 8.7859 (16) ÅCell parameters from 1632 reflections
c = 9.714 (2) Åθ = 25°
α = 109.451 (7)°µ = 0.10 mm1
β = 99.540 (7)°T = 300 K
γ = 96.474 (7)°Prism, colorless
V = 639.5 (2) Å30.22 × 0.16 × 0.1 mm
Z = 2
Bruker SMART X2S diffractometer1632 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.027
Graphite monochromatorθmax = 25.0°, θmin = 2.5°
multi–scanh = −9→9
6407 measured reflectionsk = −10→10
2218 independent reflectionsl = −11→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.130H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0714P)2 + 0.0663P] where P = (Fo2 + 2Fc2)/3
2218 reflections(Δ/σ)max < 0.001
162 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.20 e Å3
0 constraints
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C8−0.0609 (3)0.4383 (3)0.7235 (3)0.0705 (7)
H8A−0.15040.35920.72580.106*
H8B0.02750.46550.81070.106*
H8C−0.01770.39310.63540.106*
C7−0.1275 (2)0.5921 (2)0.7215 (2)0.0452 (5)
O30.02502 (15)0.69800 (15)0.71797 (16)0.0449 (4)
C60.0186 (2)0.8470 (2)0.7099 (2)0.0363 (4)
N40.17149 (18)0.92339 (18)0.70828 (17)0.0379 (4)
C30.3293 (2)0.8718 (2)0.7533 (2)0.0386 (5)
H3A0.30940.75390.72910.046*
H3B0.37050.92410.86060.046*
C20.4601 (2)0.9178 (2)0.6738 (2)0.0426 (5)
H2A0.56520.88710.70810.051*
H2B0.4230.85740.56720.051*
N30.48827 (18)1.09515 (18)0.70205 (16)0.0380 (4)
C10.5834 (2)1.1978 (2)0.8426 (2)0.0372 (5)
C10−0.1871 (3)0.6755 (3)0.8630 (3)0.0710 (7)
H10A−0.28580.60760.8660.106*
H10B−0.21330.77960.8640.106*
H10C−0.09990.69210.94860.106*
O2−0.10816 (16)0.90611 (16)0.70148 (16)0.0489 (4)
N20.7249 (2)1.1515 (2)0.8972 (2)0.0500 (5)
C50.3302 (2)1.1390 (2)0.6480 (2)0.0437 (5)
H5A0.29631.0830.54050.052*
H5B0.34811.25610.66820.052*
C40.1884 (2)1.0956 (2)0.7193 (2)0.0422 (5)
H4A0.21141.16660.82360.051*
H4B0.08351.11340.66930.051*
C9−0.2609 (3)0.5532 (3)0.5819 (3)0.0623 (6)
H9A−0.35860.48460.58590.093*
H9B−0.21850.49680.4960.093*
H9C−0.29070.65330.57470.093*
O10.6559 (2)1.42316 (18)1.05009 (17)0.0655 (5)
H10.62361.50711.09510.098*
N10.5327 (2)1.33013 (19)0.91361 (19)0.0483 (5)
H2C0.776 (3)1.084 (3)0.835 (3)0.061 (7)*
H2D0.789 (3)1.232 (3)0.986 (3)0.076 (8)*
U11U22U33U12U13U23
C80.0538 (14)0.0579 (14)0.113 (2)0.0029 (12)0.0172 (14)0.0500 (15)
C70.0329 (10)0.0476 (12)0.0584 (13)−0.0013 (9)0.0116 (9)0.0252 (10)
O30.0339 (7)0.0396 (8)0.0685 (9)0.0052 (6)0.0167 (7)0.0264 (7)
C60.0348 (10)0.0372 (10)0.0377 (10)0.0091 (8)0.0113 (8)0.0119 (8)
N40.0307 (8)0.0338 (8)0.0539 (10)0.0079 (6)0.0134 (7)0.0191 (7)
C30.0327 (10)0.0316 (10)0.0541 (12)0.0074 (8)0.0106 (9)0.0176 (9)
C20.0378 (11)0.0360 (10)0.0500 (12)0.0067 (8)0.0149 (9)0.0077 (9)
N30.0399 (9)0.0358 (9)0.0411 (9)0.0045 (7)0.0144 (7)0.0153 (7)
C10.0357 (10)0.0344 (10)0.0457 (11)0.0046 (8)0.0150 (9)0.0173 (9)
C100.0646 (15)0.0950 (19)0.0633 (15)0.0070 (14)0.0278 (13)0.0369 (14)
O20.0332 (8)0.0476 (8)0.0696 (10)0.0143 (6)0.0153 (7)0.0214 (7)
N20.0422 (10)0.0483 (11)0.0554 (12)0.0131 (9)0.0093 (9)0.0125 (9)
C50.0481 (12)0.0424 (11)0.0436 (11)0.0037 (9)0.0060 (9)0.0225 (9)
C40.0390 (11)0.0326 (10)0.0571 (12)0.0106 (8)0.0091 (9)0.0182 (9)
C90.0512 (13)0.0536 (13)0.0695 (16)−0.0039 (11)0.0003 (12)0.0164 (12)
O10.0646 (10)0.0469 (9)0.0624 (10)0.0096 (8)−0.0060 (8)0.0004 (7)
N10.0436 (10)0.0355 (9)0.0547 (11)0.0041 (8)0.0012 (8)0.0073 (8)
C8—C71.517 (3)N3—C51.457 (2)
C8—H8A0.96C1—N11.292 (2)
C8—H8B0.96C1—N21.356 (3)
C8—H8C0.96C10—H10A0.96
C7—O31.484 (2)C10—H10B0.96
C7—C91.506 (3)C10—H10C0.96
C7—C101.515 (3)N2—H2C0.89 (3)
O3—C61.343 (2)N2—H2D0.94 (3)
C6—O21.216 (2)C5—C41.522 (3)
C6—N41.358 (2)C5—H5A0.97
N4—C31.465 (2)C5—H5B0.97
N4—C41.470 (2)C4—H4A0.97
C3—C21.514 (3)C4—H4B0.97
C3—H3A0.97C9—H9A0.96
C3—H3B0.97C9—H9B0.96
C2—N31.473 (2)C9—H9C0.96
C2—H2A0.97O1—N11.447 (2)
C2—H2B0.97O1—H10.82
N3—C11.398 (2)
C7—C8—H8A109.5C5—N3—C2108.79 (15)
C7—C8—H8B109.5N1—C1—N2123.51 (19)
H8A—C8—H8B109.5N1—C1—N3119.03 (17)
C7—C8—H8C109.5N2—C1—N3117.45 (17)
H8A—C8—H8C109.5C7—C10—H10A109.5
H8B—C8—H8C109.5C7—C10—H10B109.5
O3—C7—C9110.52 (16)H10A—C10—H10B109.5
O3—C7—C10109.00 (17)C7—C10—H10C109.5
C9—C7—C10112.76 (19)H10A—C10—H10C109.5
O3—C7—C8101.95 (15)H10B—C10—H10C109.5
C9—C7—C8110.19 (18)C1—N2—H2C119.9 (15)
C10—C7—C8111.90 (18)C1—N2—H2D112.7 (15)
C6—O3—C7121.19 (14)H2C—N2—H2D120 (2)
O2—C6—O3124.82 (16)N3—C5—C4113.42 (14)
O2—C6—N4123.46 (17)N3—C5—H5A108.9
O3—C6—N4111.70 (15)C4—C5—H5A108.9
C6—N4—C3123.10 (15)N3—C5—H5B108.9
C6—N4—C4117.64 (15)C4—C5—H5B108.9
C3—N4—C4115.06 (15)H5A—C5—H5B107.7
N4—C3—C2110.37 (15)N4—C4—C5110.69 (15)
N4—C3—H3A109.6N4—C4—H4A109.5
C2—C3—H3A109.6C5—C4—H4A109.5
N4—C3—H3B109.6N4—C4—H4B109.5
C2—C3—H3B109.6C5—C4—H4B109.5
H3A—C3—H3B108.1H4A—C4—H4B108.1
N3—C2—C3111.33 (14)C7—C9—H9A109.5
N3—C2—H2A109.4C7—C9—H9B109.5
C3—C2—H2A109.4H9A—C9—H9B109.5
N3—C2—H2B109.4C7—C9—H9C109.5
C3—C2—H2B109.4H9A—C9—H9C109.5
H2A—C2—H2B108H9B—C9—H9C109.5
C1—N3—C5117.38 (15)N1—O1—H1109.5
C1—N3—C2116.57 (15)C1—N1—O1109.58 (16)
C9—C7—O3—C660.5 (2)C3—C2—N3—C5−59.90 (19)
C10—C7—O3—C6−64.0 (2)C5—N3—C1—N1−3.9 (2)
C8—C7—O3—C6177.58 (17)C2—N3—C1—N1−135.54 (18)
C7—O3—C6—O2−1.7 (3)C5—N3—C1—N2175.79 (15)
C7—O3—C6—N4179.86 (15)C2—N3—C1—N244.1 (2)
O2—C6—N4—C3165.07 (18)C1—N3—C5—C4−77.5 (2)
O3—C6—N4—C3−16.5 (2)C2—N3—C5—C457.6 (2)
O2—C6—N4—C49.3 (3)C6—N4—C4—C5−154.43 (16)
O3—C6—N4—C4−172.28 (15)C3—N4—C4—C547.9 (2)
C6—N4—C3—C2152.67 (16)N3—C5—C4—N4−51.3 (2)
C4—N4—C3—C2−51.0 (2)N2—C1—N1—O14.7 (3)
N4—C3—C2—N356.6 (2)N3—C1—N1—O1−175.65 (15)
C3—C2—N3—C175.6 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2D···O10.94 (3)2.08 (3)2.538 (2)108.3 (19)
N2—H2C···O2i0.89 (3)2.10 (3)2.988 (2)173 (3)
O1—H1···N1ii0.822.042.764 (3)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2D⋯O10.94 (3)2.08 (3)2.538 (2)108.3 (19)
N2—H2C⋯O2i 0.89 (3)2.10 (3)2.988 (2)173 (3)
O1—H1⋯N1ii 0.822.042.764 (3)147

Symmetry codes: (i) ; (ii) .

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