Literature DB >> 23476178

1-(1-Benzyl-1H-benzimidazol-2-yl)ethanone.

Chuan-Jing Zhang1, Xiu-Zhen Xu, Ning Yang, Ren-Ying Zhao, Yan-Qing Ge.   

Abstract

In the title compound, C16H14N2O, the benzimidazole ring system is essentially planar. The planes of the benzene rings make a dihedral angle of 85.92 (8)°. In the crystal, neighbouring molecule are connected into paris along the c axis by weak C-H⋯O interactions and the connected pairs are expanded through C-H⋯N hydrogen bonds and C-H⋯π interactions along the b axis.

Entities:  

Year:  2012        PMID: 23476178      PMCID: PMC3588942          DOI: 10.1107/S1600536812043875

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Cao et al. (2012 ▶). For applications of nitro­gen-containing heterocyclic compounds in the agrochemical and pharmaceutical fields, see: Ge et al. (2009 ▶, 2011 ▶). For a related structure, see: Sun et al. (2012 ▶).

Experimental

Crystal data

C16H14N2O M = 250.29 Triclinic, a = 6.1307 (10) Å b = 6.5226 (12) Å c = 34.739 (6) Å α = 90.021 (3)° β = 92.749 (3)° γ = 110.674 (3)° V = 1298.0 (4) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.28 × 0.24 × 0.19 mm

Data collection

Brucker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.978, T max = 0.985 6666 measured reflections 4523 independent reflections 3775 reflections with I > 2σ(I) R int = 0.061

Refinement

R[F 2 > 2σ(F 2)] = 0.068 wR(F 2) = 0.189 S = 1.05 4523 reflections 345 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.29 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812043875/gg2103sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812043875/gg2103Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812043875/gg2103Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H14N2OZ = 4
Mr = 250.29F(000) = 528
Triclinic, P1Dx = 1.281 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.1307 (10) ÅCell parameters from 3788 reflections
b = 6.5226 (12) Åθ = 2.9–28.3°
c = 34.739 (6) ŵ = 0.08 mm1
α = 90.021 (3)°T = 293 K
β = 92.749 (3)°Block, colorless
γ = 110.674 (3)°0.28 × 0.24 × 0.19 mm
V = 1298.0 (4) Å3
Brucker APEXII CCD area-detector diffractometer4523 independent reflections
Radiation source: fine-focus sealed tube3775 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.061
φ and ω scansθmax = 25.1°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −7→5
Tmin = 0.978, Tmax = 0.985k = −6→7
6666 measured reflectionsl = −41→40
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.068Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.189H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.080P)2 + 1.3353P] where P = (Fo2 + 2Fc2)/3
4523 reflections(Δ/σ)max = 0.009
345 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N20.2590 (4)0.5385 (4)0.04941 (6)0.0375 (5)
N10.3603 (4)0.6559 (4)0.11075 (6)0.0387 (5)
C90.2089 (5)0.7550 (4)0.09724 (8)0.0360 (6)
C40.1469 (5)0.6810 (4)0.05892 (8)0.0349 (6)
O10.6433 (4)0.3837 (4)0.11196 (7)0.0618 (7)
C30.3821 (5)0.5266 (5)0.08078 (8)0.0374 (6)
C110.3396 (5)0.4803 (5)0.17452 (8)0.0431 (7)
C80.1216 (6)0.9027 (5)0.11414 (9)0.0457 (7)
H80.16390.95310.13940.055*
C100.4598 (6)0.6760 (5)0.15034 (8)0.0478 (7)
H10A0.44930.80610.16240.057*
H10B0.62390.69520.14970.057*
C5−0.0061 (5)0.7522 (5)0.03642 (8)0.0415 (7)
H5−0.04770.70430.01100.050*
C20.5329 (5)0.3922 (5)0.08265 (9)0.0426 (7)
C10.5351 (6)0.2674 (5)0.04673 (10)0.0533 (8)
H1A0.67000.22490.04780.080*
H1B0.54010.35810.02480.080*
H1C0.39650.13880.04450.080*
C6−0.0931 (6)0.8958 (5)0.05327 (9)0.0481 (7)
H6−0.19640.94480.03890.058*
C7−0.0307 (6)0.9703 (5)0.09136 (10)0.0497 (8)
H7−0.09331.06790.10170.060*
C160.0981 (6)0.3821 (5)0.17316 (9)0.0487 (7)
H160.00720.43600.15680.058*
C120.4703 (7)0.3977 (7)0.19917 (9)0.0612 (9)
H120.63220.46210.20050.073*
C130.3631 (8)0.2209 (8)0.22184 (11)0.0769 (12)
H130.45360.16600.23810.092*
C140.1242 (8)0.1247 (7)0.22070 (10)0.0694 (11)
H140.05270.00700.23640.083*
C15−0.0081 (7)0.2042 (6)0.19608 (10)0.0605 (9)
H15−0.16990.13820.19480.073*
N30.2918 (4)0.1314 (4)0.38915 (6)0.0382 (5)
N40.2276 (4)0.0279 (4)0.45054 (6)0.0373 (5)
C250.1488 (5)0.2343 (4)0.40291 (8)0.0365 (6)
C200.1103 (5)0.1685 (4)0.44105 (7)0.0343 (6)
O20.5754 (4)−0.1398 (4)0.38807 (7)0.0604 (6)
C190.3329 (5)0.0094 (4)0.41922 (8)0.0367 (6)
C270.2311 (5)−0.0590 (5)0.32567 (8)0.0420 (7)
C21−0.0289 (5)0.2441 (5)0.46367 (8)0.0420 (7)
H21−0.05460.20180.48910.050*
C260.3662 (5)0.1418 (5)0.34957 (8)0.0463 (7)
H26A0.53060.16090.35020.056*
H26B0.34820.26890.33740.056*
C180.4815 (5)−0.1260 (5)0.41743 (9)0.0429 (7)
C240.0503 (5)0.3784 (5)0.38595 (8)0.0447 (7)
H240.07600.42280.36060.054*
C170.5069 (6)−0.2427 (5)0.45347 (10)0.0511 (8)
H17A0.3755−0.37670.45480.077*
H17B0.5136−0.15110.47550.077*
H17C0.6479−0.27510.45330.077*
C280.3418 (7)−0.1542 (6)0.30162 (9)0.0580 (9)
H280.5033−0.09370.30050.070*
C32−0.0115 (6)−0.1540 (6)0.32685 (9)0.0495 (8)
H32−0.0909−0.09350.34290.059*
C23−0.0862 (6)0.4507 (5)0.40859 (9)0.0479 (7)
H23−0.15410.54710.39840.058*
C22−0.1260 (6)0.3834 (5)0.44664 (9)0.0483 (7)
H22−0.22140.43490.46090.058*
C31−0.1339 (7)−0.3367 (6)0.30447 (11)0.0619 (9)
H31−0.2954−0.39850.30550.074*
C290.2199 (8)−0.3370 (7)0.27911 (10)0.0714 (11)
H290.2983−0.39820.26300.086*
C30−0.0193 (8)−0.4277 (7)0.28074 (11)0.0697 (11)
H30−0.1030−0.55100.26570.084*
U11U22U33U12U13U23
N20.0412 (13)0.0429 (12)0.0320 (12)0.0194 (10)0.0003 (10)0.0024 (9)
N10.0393 (13)0.0487 (13)0.0301 (12)0.0185 (11)−0.0017 (10)0.0009 (10)
C90.0356 (14)0.0407 (14)0.0315 (14)0.0131 (12)0.0028 (11)0.0027 (11)
C40.0361 (14)0.0363 (13)0.0326 (13)0.0132 (11)0.0029 (11)0.0035 (11)
O10.0563 (14)0.0921 (18)0.0516 (14)0.0450 (14)−0.0029 (11)0.0094 (12)
C30.0351 (14)0.0423 (14)0.0358 (14)0.0149 (12)0.0023 (11)0.0040 (11)
C110.0473 (17)0.0631 (18)0.0257 (13)0.0283 (15)−0.0018 (12)−0.0035 (12)
C80.0525 (18)0.0479 (16)0.0392 (16)0.0208 (14)0.0034 (13)−0.0027 (13)
C100.0443 (17)0.0619 (19)0.0340 (15)0.0162 (14)−0.0093 (13)−0.0031 (13)
C50.0471 (17)0.0460 (16)0.0345 (14)0.0211 (13)−0.0027 (12)0.0053 (12)
C20.0354 (15)0.0516 (17)0.0443 (17)0.0196 (13)0.0040 (13)0.0078 (13)
C10.059 (2)0.0536 (18)0.058 (2)0.0321 (16)0.0067 (16)0.0002 (15)
C60.0492 (18)0.0515 (17)0.0515 (18)0.0278 (15)0.0000 (14)0.0079 (14)
C70.0538 (19)0.0478 (17)0.0553 (19)0.0271 (15)0.0085 (15)0.0009 (14)
C160.0509 (18)0.0628 (19)0.0368 (16)0.0259 (16)−0.0005 (13)0.0005 (14)
C120.058 (2)0.096 (3)0.0390 (17)0.039 (2)0.0002 (15)0.0114 (17)
C130.085 (3)0.111 (3)0.054 (2)0.057 (3)0.007 (2)0.030 (2)
C140.095 (3)0.076 (2)0.046 (2)0.040 (2)0.0195 (19)0.0160 (17)
C150.058 (2)0.067 (2)0.057 (2)0.0204 (17)0.0105 (16)−0.0019 (17)
N30.0403 (13)0.0476 (13)0.0287 (11)0.0178 (11)0.0051 (9)0.0045 (9)
N40.0401 (13)0.0428 (13)0.0325 (12)0.0188 (10)0.0039 (10)0.0037 (9)
C250.0363 (14)0.0391 (14)0.0344 (14)0.0136 (12)0.0019 (11)0.0017 (11)
C200.0379 (14)0.0357 (13)0.0296 (13)0.0130 (11)0.0022 (11)0.0015 (10)
O20.0567 (14)0.0883 (17)0.0514 (14)0.0436 (13)0.0108 (11)−0.0015 (12)
C190.0355 (14)0.0406 (14)0.0349 (14)0.0149 (12)0.0010 (11)0.0024 (11)
C270.0492 (17)0.0603 (18)0.0256 (13)0.0303 (14)0.0049 (12)0.0091 (12)
C210.0478 (17)0.0451 (16)0.0370 (15)0.0205 (13)0.0069 (12)0.0013 (12)
C260.0446 (17)0.0598 (18)0.0353 (15)0.0181 (14)0.0120 (13)0.0125 (13)
C180.0364 (15)0.0513 (17)0.0436 (17)0.0190 (13)−0.0001 (13)−0.0014 (13)
C240.0523 (18)0.0495 (16)0.0349 (15)0.0219 (14)−0.0015 (13)0.0072 (12)
C170.0552 (19)0.0553 (18)0.0538 (19)0.0334 (16)0.0008 (15)0.0070 (14)
C280.062 (2)0.092 (3)0.0353 (16)0.046 (2)0.0044 (15)0.0034 (16)
C320.0486 (18)0.065 (2)0.0413 (16)0.0274 (16)0.0057 (13)0.0009 (14)
C230.0519 (18)0.0477 (17)0.0516 (18)0.0275 (14)−0.0025 (14)0.0054 (14)
C220.0525 (18)0.0511 (17)0.0502 (18)0.0288 (15)0.0056 (14)−0.0019 (14)
C310.058 (2)0.071 (2)0.057 (2)0.0253 (18)−0.0066 (17)0.0025 (17)
C290.095 (3)0.099 (3)0.0431 (19)0.063 (3)−0.0003 (19)−0.0115 (19)
C300.089 (3)0.079 (3)0.050 (2)0.043 (2)−0.0192 (19)−0.0122 (18)
N2—C31.313 (4)N3—C251.379 (4)
N2—C41.385 (4)N3—C191.380 (4)
N1—C91.372 (4)N3—C261.464 (4)
N1—C31.380 (4)N4—C191.318 (4)
N1—C101.464 (4)N4—C201.382 (4)
C9—C81.398 (4)C25—C241.401 (4)
C9—C41.404 (4)C25—C201.398 (4)
C4—C51.394 (4)C20—C211.397 (4)
O1—C21.208 (4)O2—C181.213 (4)
C3—C21.481 (4)C19—C181.480 (4)
C11—C121.380 (4)C27—C281.377 (4)
C11—C161.389 (5)C27—C321.397 (4)
C11—C101.508 (4)C27—C261.503 (4)
C8—C71.383 (4)C21—C221.371 (4)
C8—H80.9300C21—H210.9300
C10—H10A0.9700C26—H26A0.9700
C10—H10B0.9700C26—H26B0.9700
C5—C61.373 (4)C18—C171.495 (4)
C5—H50.9300C24—C231.372 (4)
C2—C11.493 (4)C24—H240.9300
C1—H1A0.9600C17—H17A0.9600
C1—H1B0.9600C17—H17B0.9600
C1—H1C0.9600C17—H17C0.9600
C6—C71.398 (5)C28—C291.380 (6)
C6—H60.9300C28—H280.9300
C7—H70.9300C32—C311.378 (5)
C16—C151.386 (5)C32—H320.9300
C16—H160.9300C23—C221.398 (5)
C12—C131.378 (6)C23—H230.9300
C12—H120.9300C22—H220.9300
C13—C141.373 (6)C31—C301.370 (6)
C13—H130.9300C31—H310.9300
C14—C151.375 (5)C29—C301.378 (6)
C14—H140.9300C29—H290.9300
C15—H150.9300C30—H300.9300
C3—N2—C4105.1 (2)C25—N3—C19106.0 (2)
C9—N1—C3106.3 (2)C25—N3—C26125.3 (2)
C9—N1—C10124.9 (2)C19—N3—C26128.6 (2)
C3—N1—C10128.7 (2)C19—N4—C20105.3 (2)
N1—C9—C8132.5 (3)N3—C25—C24132.4 (3)
N1—C9—C4105.9 (2)N3—C25—C20106.1 (2)
C8—C9—C4121.6 (3)C24—C25—C20121.5 (3)
N2—C4—C5129.5 (2)N4—C20—C21129.3 (2)
N2—C4—C9109.7 (2)N4—C20—C25109.7 (2)
C5—C4—C9120.8 (3)C21—C20—C25121.0 (3)
N2—C3—N1113.0 (2)N4—C19—N3112.8 (2)
N2—C3—C2122.5 (3)N4—C19—C18122.6 (2)
N1—C3—C2124.5 (2)N3—C19—C18124.5 (2)
C12—C11—C16118.7 (3)C28—C27—C32117.8 (3)
C12—C11—C10119.9 (3)C28—C27—C26121.2 (3)
C16—C11—C10121.5 (3)C32—C27—C26121.0 (3)
C7—C8—C9116.7 (3)C22—C21—C20116.9 (3)
C7—C8—H8121.7C22—C21—H21121.5
C9—C8—H8121.7C20—C21—H21121.5
N1—C10—C11113.2 (2)N3—C26—C27113.3 (2)
N1—C10—H10A108.9N3—C26—H26A108.9
C11—C10—H10A108.9C27—C26—H26A108.9
N1—C10—H10B108.9N3—C26—H26B108.9
C11—C10—H10B108.9C27—C26—H26B108.9
H10A—C10—H10B107.7H26A—C26—H26B107.7
C6—C5—C4117.4 (3)O2—C18—C19120.9 (3)
C6—C5—H5121.3O2—C18—C17123.0 (3)
C4—C5—H5121.3C19—C18—C17116.2 (3)
O1—C2—C3121.0 (3)C23—C24—C25116.7 (3)
O1—C2—C1122.9 (3)C23—C24—H24121.7
C3—C2—C1116.0 (3)C25—C24—H24121.7
C2—C1—H1A109.5C18—C17—H17A109.5
C2—C1—H1B109.5C18—C17—H17B109.5
H1A—C1—H1B109.5H17A—C17—H17B109.5
C2—C1—H1C109.5C18—C17—H17C109.5
H1A—C1—H1C109.5H17A—C17—H17C109.5
H1B—C1—H1C109.5H17B—C17—H17C109.5
C5—C6—C7121.9 (3)C27—C28—C29121.8 (4)
C5—C6—H6119.1C27—C28—H28119.1
C7—C6—H6119.1C29—C28—H28119.1
C8—C7—C6121.7 (3)C31—C32—C27120.5 (3)
C8—C7—H7119.2C31—C32—H32119.7
C6—C7—H7119.2C27—C32—H32119.7
C15—C16—C11120.3 (3)C24—C23—C22121.7 (3)
C15—C16—H16119.9C24—C23—H23119.1
C11—C16—H16119.9C22—C23—H23119.1
C13—C12—C11120.6 (4)C21—C22—C23122.1 (3)
C13—C12—H12119.7C21—C22—H22118.9
C11—C12—H12119.7C23—C22—H22118.9
C14—C13—C12120.8 (4)C30—C31—C32120.4 (4)
C14—C13—H13119.6C30—C31—H31119.8
C12—C13—H13119.6C32—C31—H31119.8
C15—C14—C13119.3 (4)C28—C29—C30119.3 (3)
C15—C14—H14120.4C28—C29—H29120.3
C13—C14—H14120.4C30—C29—H29120.3
C14—C15—C16120.4 (4)C31—C30—C29120.1 (4)
C14—C15—H15119.8C31—C30—H30119.9
C16—C15—H15119.8C29—C30—H30119.9
D—H···AD—HH···AD···AD—H···A
C5—H5···N2i0.932.623.517 (4)161
C10—H10B···O10.972.462.887 (4)106
C16—H16···O1ii0.932.583.427 (4)152
C21—H21···N4iii0.932.623.513 (4)161
C26—H26A···O20.972.452.882 (4)107
C32—H32···O2ii0.932.573.410 (4)150
C1—H1C···Cg1iv0.962.613.487 (4)151
C17—H17A···Cg2iv0.962.613.491 (4)153
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C4–C9 and C20–C25 rings, respectively.

D—H⋯A D—HH⋯A DA D—H⋯A
C5—H5⋯N2i 0.932.623.517 (4)161
C16—H16⋯O1ii 0.932.583.427 (4)152
C21—H21⋯N4iii 0.932.623.513 (4)161
C32—H32⋯O2ii 0.932.573.410 (4)150
C1—H1CCg1iv 0.962.613.487 (4)151
C17—H17ACg2iv 0.962.613.491 (4)153

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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