| Literature DB >> 23476178 |
Chuan-Jing Zhang1, Xiu-Zhen Xu, Ning Yang, Ren-Ying Zhao, Yan-Qing Ge.
Abstract
In the title compound, C16H14N2O, the benzimidazole ring system is essentially planar. The planes of the benzene rings make a dihedral angle of 85.92 (8)°. In the crystal, neighbouring molecule are connected into paris along the c axis by weak C-H⋯O interactions and the connected pairs are expanded through C-H⋯N hydrogen bonds and C-H⋯π interactions along the b axis.Entities:
Year: 2012 PMID: 23476178 PMCID: PMC3588942 DOI: 10.1107/S1600536812043875
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C16H14N2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 3788 reflections | |
| θ = 2.9–28.3° | |
| µ = 0.08 mm−1 | |
| α = 90.021 (3)° | |
| β = 92.749 (3)° | Block, colorless |
| γ = 110.674 (3)° | 0.28 × 0.24 × 0.19 mm |
| Brucker APEXII CCD area-detector diffractometer | 4523 independent reflections |
| Radiation source: fine-focus sealed tube | 3775 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 25.1°, θmin = 2.4° |
| Absorption correction: multi-scan ( | |
| 6666 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 4523 reflections | (Δ/σ)max = 0.009 |
| 345 parameters | Δρmax = 0.23 e Å−3 |
| 0 restraints | Δρmin = −0.29 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N2 | 0.2590 (4) | 0.5385 (4) | 0.04941 (6) | 0.0375 (5) | |
| N1 | 0.3603 (4) | 0.6559 (4) | 0.11075 (6) | 0.0387 (5) | |
| C9 | 0.2089 (5) | 0.7550 (4) | 0.09724 (8) | 0.0360 (6) | |
| C4 | 0.1469 (5) | 0.6810 (4) | 0.05892 (8) | 0.0349 (6) | |
| O1 | 0.6433 (4) | 0.3837 (4) | 0.11196 (7) | 0.0618 (7) | |
| C3 | 0.3821 (5) | 0.5266 (5) | 0.08078 (8) | 0.0374 (6) | |
| C11 | 0.3396 (5) | 0.4803 (5) | 0.17452 (8) | 0.0431 (7) | |
| C8 | 0.1216 (6) | 0.9027 (5) | 0.11414 (9) | 0.0457 (7) | |
| H8 | 0.1639 | 0.9531 | 0.1394 | 0.055* | |
| C10 | 0.4598 (6) | 0.6760 (5) | 0.15034 (8) | 0.0478 (7) | |
| H10A | 0.4493 | 0.8061 | 0.1624 | 0.057* | |
| H10B | 0.6239 | 0.6952 | 0.1497 | 0.057* | |
| C5 | −0.0061 (5) | 0.7522 (5) | 0.03642 (8) | 0.0415 (7) | |
| H5 | −0.0477 | 0.7043 | 0.0110 | 0.050* | |
| C2 | 0.5329 (5) | 0.3922 (5) | 0.08265 (9) | 0.0426 (7) | |
| C1 | 0.5351 (6) | 0.2674 (5) | 0.04673 (10) | 0.0533 (8) | |
| H1A | 0.6700 | 0.2249 | 0.0478 | 0.080* | |
| H1B | 0.5401 | 0.3581 | 0.0248 | 0.080* | |
| H1C | 0.3965 | 0.1388 | 0.0445 | 0.080* | |
| C6 | −0.0931 (6) | 0.8958 (5) | 0.05327 (9) | 0.0481 (7) | |
| H6 | −0.1964 | 0.9448 | 0.0389 | 0.058* | |
| C7 | −0.0307 (6) | 0.9703 (5) | 0.09136 (10) | 0.0497 (8) | |
| H7 | −0.0933 | 1.0679 | 0.1017 | 0.060* | |
| C16 | 0.0981 (6) | 0.3821 (5) | 0.17316 (9) | 0.0487 (7) | |
| H16 | 0.0072 | 0.4360 | 0.1568 | 0.058* | |
| C12 | 0.4703 (7) | 0.3977 (7) | 0.19917 (9) | 0.0612 (9) | |
| H12 | 0.6322 | 0.4621 | 0.2005 | 0.073* | |
| C13 | 0.3631 (8) | 0.2209 (8) | 0.22184 (11) | 0.0769 (12) | |
| H13 | 0.4536 | 0.1660 | 0.2381 | 0.092* | |
| C14 | 0.1242 (8) | 0.1247 (7) | 0.22070 (10) | 0.0694 (11) | |
| H14 | 0.0527 | 0.0070 | 0.2364 | 0.083* | |
| C15 | −0.0081 (7) | 0.2042 (6) | 0.19608 (10) | 0.0605 (9) | |
| H15 | −0.1699 | 0.1382 | 0.1948 | 0.073* | |
| N3 | 0.2918 (4) | 0.1314 (4) | 0.38915 (6) | 0.0382 (5) | |
| N4 | 0.2276 (4) | 0.0279 (4) | 0.45054 (6) | 0.0373 (5) | |
| C25 | 0.1488 (5) | 0.2343 (4) | 0.40291 (8) | 0.0365 (6) | |
| C20 | 0.1103 (5) | 0.1685 (4) | 0.44105 (7) | 0.0343 (6) | |
| O2 | 0.5754 (4) | −0.1398 (4) | 0.38807 (7) | 0.0604 (6) | |
| C19 | 0.3329 (5) | 0.0094 (4) | 0.41922 (8) | 0.0367 (6) | |
| C27 | 0.2311 (5) | −0.0590 (5) | 0.32567 (8) | 0.0420 (7) | |
| C21 | −0.0289 (5) | 0.2441 (5) | 0.46367 (8) | 0.0420 (7) | |
| H21 | −0.0546 | 0.2018 | 0.4891 | 0.050* | |
| C26 | 0.3662 (5) | 0.1418 (5) | 0.34957 (8) | 0.0463 (7) | |
| H26A | 0.5306 | 0.1609 | 0.3502 | 0.056* | |
| H26B | 0.3482 | 0.2689 | 0.3374 | 0.056* | |
| C18 | 0.4815 (5) | −0.1260 (5) | 0.41743 (9) | 0.0429 (7) | |
| C24 | 0.0503 (5) | 0.3784 (5) | 0.38595 (8) | 0.0447 (7) | |
| H24 | 0.0760 | 0.4228 | 0.3606 | 0.054* | |
| C17 | 0.5069 (6) | −0.2427 (5) | 0.45347 (10) | 0.0511 (8) | |
| H17A | 0.3755 | −0.3767 | 0.4548 | 0.077* | |
| H17B | 0.5136 | −0.1511 | 0.4755 | 0.077* | |
| H17C | 0.6479 | −0.2751 | 0.4533 | 0.077* | |
| C28 | 0.3418 (7) | −0.1542 (6) | 0.30162 (9) | 0.0580 (9) | |
| H28 | 0.5033 | −0.0937 | 0.3005 | 0.070* | |
| C32 | −0.0115 (6) | −0.1540 (6) | 0.32685 (9) | 0.0495 (8) | |
| H32 | −0.0909 | −0.0935 | 0.3429 | 0.059* | |
| C23 | −0.0862 (6) | 0.4507 (5) | 0.40859 (9) | 0.0479 (7) | |
| H23 | −0.1541 | 0.5471 | 0.3984 | 0.058* | |
| C22 | −0.1260 (6) | 0.3834 (5) | 0.44664 (9) | 0.0483 (7) | |
| H22 | −0.2214 | 0.4349 | 0.4609 | 0.058* | |
| C31 | −0.1339 (7) | −0.3367 (6) | 0.30447 (11) | 0.0619 (9) | |
| H31 | −0.2954 | −0.3985 | 0.3055 | 0.074* | |
| C29 | 0.2199 (8) | −0.3370 (7) | 0.27911 (10) | 0.0714 (11) | |
| H29 | 0.2983 | −0.3982 | 0.2630 | 0.086* | |
| C30 | −0.0193 (8) | −0.4277 (7) | 0.28074 (11) | 0.0697 (11) | |
| H30 | −0.1030 | −0.5510 | 0.2657 | 0.084* |
| N2 | 0.0412 (13) | 0.0429 (12) | 0.0320 (12) | 0.0194 (10) | 0.0003 (10) | 0.0024 (9) |
| N1 | 0.0393 (13) | 0.0487 (13) | 0.0301 (12) | 0.0185 (11) | −0.0017 (10) | 0.0009 (10) |
| C9 | 0.0356 (14) | 0.0407 (14) | 0.0315 (14) | 0.0131 (12) | 0.0028 (11) | 0.0027 (11) |
| C4 | 0.0361 (14) | 0.0363 (13) | 0.0326 (13) | 0.0132 (11) | 0.0029 (11) | 0.0035 (11) |
| O1 | 0.0563 (14) | 0.0921 (18) | 0.0516 (14) | 0.0450 (14) | −0.0029 (11) | 0.0094 (12) |
| C3 | 0.0351 (14) | 0.0423 (14) | 0.0358 (14) | 0.0149 (12) | 0.0023 (11) | 0.0040 (11) |
| C11 | 0.0473 (17) | 0.0631 (18) | 0.0257 (13) | 0.0283 (15) | −0.0018 (12) | −0.0035 (12) |
| C8 | 0.0525 (18) | 0.0479 (16) | 0.0392 (16) | 0.0208 (14) | 0.0034 (13) | −0.0027 (13) |
| C10 | 0.0443 (17) | 0.0619 (19) | 0.0340 (15) | 0.0162 (14) | −0.0093 (13) | −0.0031 (13) |
| C5 | 0.0471 (17) | 0.0460 (16) | 0.0345 (14) | 0.0211 (13) | −0.0027 (12) | 0.0053 (12) |
| C2 | 0.0354 (15) | 0.0516 (17) | 0.0443 (17) | 0.0196 (13) | 0.0040 (13) | 0.0078 (13) |
| C1 | 0.059 (2) | 0.0536 (18) | 0.058 (2) | 0.0321 (16) | 0.0067 (16) | 0.0002 (15) |
| C6 | 0.0492 (18) | 0.0515 (17) | 0.0515 (18) | 0.0278 (15) | 0.0000 (14) | 0.0079 (14) |
| C7 | 0.0538 (19) | 0.0478 (17) | 0.0553 (19) | 0.0271 (15) | 0.0085 (15) | 0.0009 (14) |
| C16 | 0.0509 (18) | 0.0628 (19) | 0.0368 (16) | 0.0259 (16) | −0.0005 (13) | 0.0005 (14) |
| C12 | 0.058 (2) | 0.096 (3) | 0.0390 (17) | 0.039 (2) | 0.0002 (15) | 0.0114 (17) |
| C13 | 0.085 (3) | 0.111 (3) | 0.054 (2) | 0.057 (3) | 0.007 (2) | 0.030 (2) |
| C14 | 0.095 (3) | 0.076 (2) | 0.046 (2) | 0.040 (2) | 0.0195 (19) | 0.0160 (17) |
| C15 | 0.058 (2) | 0.067 (2) | 0.057 (2) | 0.0204 (17) | 0.0105 (16) | −0.0019 (17) |
| N3 | 0.0403 (13) | 0.0476 (13) | 0.0287 (11) | 0.0178 (11) | 0.0051 (9) | 0.0045 (9) |
| N4 | 0.0401 (13) | 0.0428 (13) | 0.0325 (12) | 0.0188 (10) | 0.0039 (10) | 0.0037 (9) |
| C25 | 0.0363 (14) | 0.0391 (14) | 0.0344 (14) | 0.0136 (12) | 0.0019 (11) | 0.0017 (11) |
| C20 | 0.0379 (14) | 0.0357 (13) | 0.0296 (13) | 0.0130 (11) | 0.0022 (11) | 0.0015 (10) |
| O2 | 0.0567 (14) | 0.0883 (17) | 0.0514 (14) | 0.0436 (13) | 0.0108 (11) | −0.0015 (12) |
| C19 | 0.0355 (14) | 0.0406 (14) | 0.0349 (14) | 0.0149 (12) | 0.0010 (11) | 0.0024 (11) |
| C27 | 0.0492 (17) | 0.0603 (18) | 0.0256 (13) | 0.0303 (14) | 0.0049 (12) | 0.0091 (12) |
| C21 | 0.0478 (17) | 0.0451 (16) | 0.0370 (15) | 0.0205 (13) | 0.0069 (12) | 0.0013 (12) |
| C26 | 0.0446 (17) | 0.0598 (18) | 0.0353 (15) | 0.0181 (14) | 0.0120 (13) | 0.0125 (13) |
| C18 | 0.0364 (15) | 0.0513 (17) | 0.0436 (17) | 0.0190 (13) | −0.0001 (13) | −0.0014 (13) |
| C24 | 0.0523 (18) | 0.0495 (16) | 0.0349 (15) | 0.0219 (14) | −0.0015 (13) | 0.0072 (12) |
| C17 | 0.0552 (19) | 0.0553 (18) | 0.0538 (19) | 0.0334 (16) | 0.0008 (15) | 0.0070 (14) |
| C28 | 0.062 (2) | 0.092 (3) | 0.0353 (16) | 0.046 (2) | 0.0044 (15) | 0.0034 (16) |
| C32 | 0.0486 (18) | 0.065 (2) | 0.0413 (16) | 0.0274 (16) | 0.0057 (13) | 0.0009 (14) |
| C23 | 0.0519 (18) | 0.0477 (17) | 0.0516 (18) | 0.0275 (14) | −0.0025 (14) | 0.0054 (14) |
| C22 | 0.0525 (18) | 0.0511 (17) | 0.0502 (18) | 0.0288 (15) | 0.0056 (14) | −0.0019 (14) |
| C31 | 0.058 (2) | 0.071 (2) | 0.057 (2) | 0.0253 (18) | −0.0066 (17) | 0.0025 (17) |
| C29 | 0.095 (3) | 0.099 (3) | 0.0431 (19) | 0.063 (3) | −0.0003 (19) | −0.0115 (19) |
| C30 | 0.089 (3) | 0.079 (3) | 0.050 (2) | 0.043 (2) | −0.0192 (19) | −0.0122 (18) |
| N2—C3 | 1.313 (4) | N3—C25 | 1.379 (4) |
| N2—C4 | 1.385 (4) | N3—C19 | 1.380 (4) |
| N1—C9 | 1.372 (4) | N3—C26 | 1.464 (4) |
| N1—C3 | 1.380 (4) | N4—C19 | 1.318 (4) |
| N1—C10 | 1.464 (4) | N4—C20 | 1.382 (4) |
| C9—C8 | 1.398 (4) | C25—C24 | 1.401 (4) |
| C9—C4 | 1.404 (4) | C25—C20 | 1.398 (4) |
| C4—C5 | 1.394 (4) | C20—C21 | 1.397 (4) |
| O1—C2 | 1.208 (4) | O2—C18 | 1.213 (4) |
| C3—C2 | 1.481 (4) | C19—C18 | 1.480 (4) |
| C11—C12 | 1.380 (4) | C27—C28 | 1.377 (4) |
| C11—C16 | 1.389 (5) | C27—C32 | 1.397 (4) |
| C11—C10 | 1.508 (4) | C27—C26 | 1.503 (4) |
| C8—C7 | 1.383 (4) | C21—C22 | 1.371 (4) |
| C8—H8 | 0.9300 | C21—H21 | 0.9300 |
| C10—H10A | 0.9700 | C26—H26A | 0.9700 |
| C10—H10B | 0.9700 | C26—H26B | 0.9700 |
| C5—C6 | 1.373 (4) | C18—C17 | 1.495 (4) |
| C5—H5 | 0.9300 | C24—C23 | 1.372 (4) |
| C2—C1 | 1.493 (4) | C24—H24 | 0.9300 |
| C1—H1A | 0.9600 | C17—H17A | 0.9600 |
| C1—H1B | 0.9600 | C17—H17B | 0.9600 |
| C1—H1C | 0.9600 | C17—H17C | 0.9600 |
| C6—C7 | 1.398 (5) | C28—C29 | 1.380 (6) |
| C6—H6 | 0.9300 | C28—H28 | 0.9300 |
| C7—H7 | 0.9300 | C32—C31 | 1.378 (5) |
| C16—C15 | 1.386 (5) | C32—H32 | 0.9300 |
| C16—H16 | 0.9300 | C23—C22 | 1.398 (5) |
| C12—C13 | 1.378 (6) | C23—H23 | 0.9300 |
| C12—H12 | 0.9300 | C22—H22 | 0.9300 |
| C13—C14 | 1.373 (6) | C31—C30 | 1.370 (6) |
| C13—H13 | 0.9300 | C31—H31 | 0.9300 |
| C14—C15 | 1.375 (5) | C29—C30 | 1.378 (6) |
| C14—H14 | 0.9300 | C29—H29 | 0.9300 |
| C15—H15 | 0.9300 | C30—H30 | 0.9300 |
| C3—N2—C4 | 105.1 (2) | C25—N3—C19 | 106.0 (2) |
| C9—N1—C3 | 106.3 (2) | C25—N3—C26 | 125.3 (2) |
| C9—N1—C10 | 124.9 (2) | C19—N3—C26 | 128.6 (2) |
| C3—N1—C10 | 128.7 (2) | C19—N4—C20 | 105.3 (2) |
| N1—C9—C8 | 132.5 (3) | N3—C25—C24 | 132.4 (3) |
| N1—C9—C4 | 105.9 (2) | N3—C25—C20 | 106.1 (2) |
| C8—C9—C4 | 121.6 (3) | C24—C25—C20 | 121.5 (3) |
| N2—C4—C5 | 129.5 (2) | N4—C20—C21 | 129.3 (2) |
| N2—C4—C9 | 109.7 (2) | N4—C20—C25 | 109.7 (2) |
| C5—C4—C9 | 120.8 (3) | C21—C20—C25 | 121.0 (3) |
| N2—C3—N1 | 113.0 (2) | N4—C19—N3 | 112.8 (2) |
| N2—C3—C2 | 122.5 (3) | N4—C19—C18 | 122.6 (2) |
| N1—C3—C2 | 124.5 (2) | N3—C19—C18 | 124.5 (2) |
| C12—C11—C16 | 118.7 (3) | C28—C27—C32 | 117.8 (3) |
| C12—C11—C10 | 119.9 (3) | C28—C27—C26 | 121.2 (3) |
| C16—C11—C10 | 121.5 (3) | C32—C27—C26 | 121.0 (3) |
| C7—C8—C9 | 116.7 (3) | C22—C21—C20 | 116.9 (3) |
| C7—C8—H8 | 121.7 | C22—C21—H21 | 121.5 |
| C9—C8—H8 | 121.7 | C20—C21—H21 | 121.5 |
| N1—C10—C11 | 113.2 (2) | N3—C26—C27 | 113.3 (2) |
| N1—C10—H10A | 108.9 | N3—C26—H26A | 108.9 |
| C11—C10—H10A | 108.9 | C27—C26—H26A | 108.9 |
| N1—C10—H10B | 108.9 | N3—C26—H26B | 108.9 |
| C11—C10—H10B | 108.9 | C27—C26—H26B | 108.9 |
| H10A—C10—H10B | 107.7 | H26A—C26—H26B | 107.7 |
| C6—C5—C4 | 117.4 (3) | O2—C18—C19 | 120.9 (3) |
| C6—C5—H5 | 121.3 | O2—C18—C17 | 123.0 (3) |
| C4—C5—H5 | 121.3 | C19—C18—C17 | 116.2 (3) |
| O1—C2—C3 | 121.0 (3) | C23—C24—C25 | 116.7 (3) |
| O1—C2—C1 | 122.9 (3) | C23—C24—H24 | 121.7 |
| C3—C2—C1 | 116.0 (3) | C25—C24—H24 | 121.7 |
| C2—C1—H1A | 109.5 | C18—C17—H17A | 109.5 |
| C2—C1—H1B | 109.5 | C18—C17—H17B | 109.5 |
| H1A—C1—H1B | 109.5 | H17A—C17—H17B | 109.5 |
| C2—C1—H1C | 109.5 | C18—C17—H17C | 109.5 |
| H1A—C1—H1C | 109.5 | H17A—C17—H17C | 109.5 |
| H1B—C1—H1C | 109.5 | H17B—C17—H17C | 109.5 |
| C5—C6—C7 | 121.9 (3) | C27—C28—C29 | 121.8 (4) |
| C5—C6—H6 | 119.1 | C27—C28—H28 | 119.1 |
| C7—C6—H6 | 119.1 | C29—C28—H28 | 119.1 |
| C8—C7—C6 | 121.7 (3) | C31—C32—C27 | 120.5 (3) |
| C8—C7—H7 | 119.2 | C31—C32—H32 | 119.7 |
| C6—C7—H7 | 119.2 | C27—C32—H32 | 119.7 |
| C15—C16—C11 | 120.3 (3) | C24—C23—C22 | 121.7 (3) |
| C15—C16—H16 | 119.9 | C24—C23—H23 | 119.1 |
| C11—C16—H16 | 119.9 | C22—C23—H23 | 119.1 |
| C13—C12—C11 | 120.6 (4) | C21—C22—C23 | 122.1 (3) |
| C13—C12—H12 | 119.7 | C21—C22—H22 | 118.9 |
| C11—C12—H12 | 119.7 | C23—C22—H22 | 118.9 |
| C14—C13—C12 | 120.8 (4) | C30—C31—C32 | 120.4 (4) |
| C14—C13—H13 | 119.6 | C30—C31—H31 | 119.8 |
| C12—C13—H13 | 119.6 | C32—C31—H31 | 119.8 |
| C15—C14—C13 | 119.3 (4) | C28—C29—C30 | 119.3 (3) |
| C15—C14—H14 | 120.4 | C28—C29—H29 | 120.3 |
| C13—C14—H14 | 120.4 | C30—C29—H29 | 120.3 |
| C14—C15—C16 | 120.4 (4) | C31—C30—C29 | 120.1 (4) |
| C14—C15—H15 | 119.8 | C31—C30—H30 | 119.9 |
| C16—C15—H15 | 119.8 | C29—C30—H30 | 119.9 |
| H··· | ||||
| C5—H5···N2i | 0.93 | 2.62 | 3.517 (4) | 161 |
| C10—H10 | 0.97 | 2.46 | 2.887 (4) | 106 |
| C16—H16···O1ii | 0.93 | 2.58 | 3.427 (4) | 152 |
| C21—H21···N4iii | 0.93 | 2.62 | 3.513 (4) | 161 |
| C26—H26 | 0.97 | 2.45 | 2.882 (4) | 107 |
| C32—H32···O2ii | 0.93 | 2.57 | 3.410 (4) | 150 |
| C1—H1 | 0.96 | 2.61 | 3.487 (4) | 151 |
| C17—H17 | 0.96 | 2.61 | 3.491 (4) | 153 |
Hydrogen-bond geometry (Å, °)
Cg1 and Cg2 are the centroids of the C4–C9 and C20–C25 rings, respectively.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C5—H5⋯N2i | 0.93 | 2.62 | 3.517 (4) | 161 |
| C16—H16⋯O1ii | 0.93 | 2.58 | 3.427 (4) | 152 |
| C21—H21⋯N4iii | 0.93 | 2.62 | 3.513 (4) | 161 |
| C32—H32⋯O2ii | 0.93 | 2.57 | 3.410 (4) | 150 |
| C1—H1 | 0.96 | 2.61 | 3.487 (4) | 151 |
| C17—H17 | 0.96 | 2.61 | 3.491 (4) | 153 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .