Literature DB >> 23476171

Diethyl 3,4-dimethyl-thieno[2,3-b]thio-phene-2,5-dicarboxyl-ate.

Mehmet Akkurt1, Alan R Kennedy, Sabry H H Younes, Shaaban K Mohamed, Gary J Miller.   

Abstract

In the title compound, C14H16O4S2, the thieno[2,3-b]thio-phene ring systems are planar [maximum deviation = 0.008 (2) Å]. The mol-ecular conformation is stabilized by intra-molecular C-H⋯O hydrogen bonds, while the crystal packing is stabilized by C-H⋯O, C-H⋯π and π-π stacking [centroid-centroid distance = 3.6605 (14) Å] inter-actions, which lead to supra-molecular layers in the ab plane.

Entities:  

Year:  2012        PMID: 23476171      PMCID: PMC3588935          DOI: 10.1107/S160053681204593X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of thienthio­phenes as versatile precursors for the synthesis of various heterocycles, see: Mabkhot et al. (2010 ▶, 2012 ▶); Litvinov (2005 ▶). For their industrial applications, see: Lee & Sotzing (2001 ▶); Heeney et al. (2005 ▶); Gather et al. (2008 ▶); He et al. (2009 ▶). For pharmaceutical values of thieno[2,3-b]thio­phenes, see: Jarak et al. (2006 ▶); Egbertson et al. (1999 ▶). For bond lengths and bond angles in similar compounds, see: Umadevi et al. (2009 ▶); Gunasekaran et al. (2009 ▶); Wang et al. (2008 ▶). For the synthesis of the title compound, see: Comel & Kirsch (2001a ▶,b ▶). For graph-set descriptions of hydrogen-bond ring motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C14H16O4S2 M = 312.39 Triclinic, a = 7.3497 (3) Å b = 8.4720 (4) Å c = 12.8629 (5) Å α = 102.770 (3)° β = 99.545 (3)° γ = 107.779 (4)° V = 719.96 (6) Å3 Z = 2 Mo Kα radiation μ = 0.38 mm−1 T = 123 K 0.30 × 0.08 × 0.06 mm

Data collection

Oxford Diffraction Xcalibur Eos diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.966, T max = 1.000 6901 measured reflections 3486 independent reflections 2661 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.106 S = 1.04 3486 reflections 185 parameters H-atom parameters constrained Δρmax = 0.53 e Å−3 Δρmin = −0.34 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681204593X/tk5168sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681204593X/tk5168Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681204593X/tk5168Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H16O4S2Z = 2
Mr = 312.39F(000) = 328
Triclinic, P1Dx = 1.441 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.3497 (3) ÅCell parameters from 2806 reflections
b = 8.4720 (4) Åθ = 3.2–29.4°
c = 12.8629 (5) ŵ = 0.38 mm1
α = 102.770 (3)°T = 123 K
β = 99.545 (3)°Rod, colourless
γ = 107.779 (4)°0.30 × 0.08 × 0.06 mm
V = 719.96 (6) Å3
Oxford Diffraction Xcalibur Eos diffractometer3486 independent reflections
Radiation source: Enhance (Mo) X-ray Source2661 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.025
Detector resolution: 16.0727 pixels mm-1θmax = 29.5°, θmin = 3.2°
ω scansh = −9→10
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −11→11
Tmin = 0.966, Tmax = 1.000l = −17→17
6901 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.106H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0365P)2 + 0.4173P] where P = (Fo2 + 2Fc2)/3
3486 reflections(Δ/σ)max = 0.002
185 parametersΔρmax = 0.53 e Å3
0 restraintsΔρmin = −0.34 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.19179 (8)0.66605 (7)0.37995 (4)0.0197 (2)
S20.42025 (8)0.92886 (7)0.61200 (4)0.0196 (2)
O10.6436 (2)0.8879 (2)0.90039 (13)0.0290 (5)
O20.6126 (2)1.1054 (2)0.83495 (12)0.0258 (5)
O30.0104 (2)0.1626 (2)0.26378 (12)0.0222 (5)
O4−0.0238 (2)0.3735 (2)0.19133 (13)0.0273 (5)
C10.3073 (3)0.7294 (3)0.51711 (17)0.0180 (6)
C20.4771 (3)0.8283 (3)0.71229 (17)0.0198 (7)
C30.4109 (3)0.6525 (3)0.67430 (17)0.0179 (6)
C40.3115 (3)0.5931 (3)0.55924 (17)0.0167 (6)
C50.2161 (3)0.4277 (3)0.47680 (17)0.0173 (6)
C60.1453 (3)0.4496 (3)0.37738 (18)0.0187 (6)
C70.4314 (3)0.5352 (3)0.74333 (19)0.0241 (7)
C80.2012 (3)0.2576 (3)0.49704 (18)0.0215 (7)
C90.5860 (3)0.9392 (3)0.82492 (18)0.0208 (7)
C100.7119 (4)1.2220 (3)0.94621 (19)0.0270 (8)
C110.7189 (4)1.3989 (3)0.9461 (2)0.0333 (8)
C120.0360 (3)0.3267 (3)0.26830 (18)0.0200 (7)
C13−0.0980 (3)0.0358 (3)0.15737 (18)0.0238 (7)
C14−0.1327 (4)−0.1397 (3)0.1742 (2)0.0339 (8)
H7A0.514400.604500.817100.0360*
H7B0.492600.456300.709200.0360*
H7C0.300700.467800.748900.0360*
H8A0.095000.164300.439000.0320*
H8B0.172400.257700.568800.0320*
H8C0.326500.239300.496600.0320*
H10A0.847401.221800.968100.0320*
H10B0.638701.183200.999400.0320*
H11A0.792501.436600.893700.0500*
H11B0.784701.478901.020100.0500*
H11C0.584201.398000.924500.0500*
H13A−0.020200.051300.102100.0290*
H13B−0.225300.049300.131100.0290*
H14A−0.00580−0.149500.202900.0510*
H14B−0.20110−0.229200.103800.0510*
H14C−0.21400−0.154900.227000.0510*
U11U22U33U12U13U23
S10.0227 (3)0.0181 (3)0.0164 (3)0.0062 (2)0.0022 (2)0.0049 (2)
S20.0231 (3)0.0171 (3)0.0170 (3)0.0065 (2)0.0030 (2)0.0041 (2)
O10.0353 (9)0.0283 (10)0.0183 (8)0.0094 (8)−0.0007 (7)0.0051 (7)
O20.0300 (9)0.0246 (10)0.0164 (8)0.0088 (7)−0.0017 (7)0.0003 (7)
O30.0253 (8)0.0173 (9)0.0181 (8)0.0045 (7)0.0002 (6)0.0020 (6)
O40.0327 (9)0.0233 (10)0.0199 (8)0.0064 (7)−0.0002 (7)0.0045 (7)
C10.0162 (10)0.0191 (12)0.0167 (10)0.0050 (9)0.0030 (8)0.0037 (9)
C20.0196 (11)0.0256 (13)0.0152 (10)0.0092 (9)0.0043 (8)0.0063 (9)
C30.0156 (10)0.0218 (12)0.0186 (11)0.0074 (9)0.0055 (8)0.0083 (9)
C40.0130 (10)0.0188 (12)0.0187 (10)0.0050 (8)0.0053 (8)0.0063 (9)
C50.0157 (10)0.0173 (12)0.0201 (11)0.0065 (9)0.0059 (8)0.0061 (9)
C60.0171 (10)0.0175 (12)0.0199 (11)0.0054 (9)0.0048 (8)0.0033 (9)
C70.0279 (12)0.0230 (13)0.0210 (11)0.0095 (10)0.0029 (9)0.0074 (10)
C80.0225 (11)0.0188 (12)0.0218 (11)0.0063 (9)0.0035 (9)0.0063 (9)
C90.0164 (11)0.0251 (13)0.0203 (11)0.0071 (9)0.0053 (9)0.0052 (9)
C100.0321 (13)0.0239 (14)0.0191 (12)0.0081 (10)0.0013 (10)0.0010 (10)
C110.0400 (15)0.0257 (15)0.0266 (13)0.0098 (12)−0.0010 (11)0.0023 (11)
C120.0172 (11)0.0207 (12)0.0200 (11)0.0046 (9)0.0058 (8)0.0041 (9)
C130.0221 (11)0.0187 (13)0.0211 (11)0.0023 (9)0.0009 (9)−0.0025 (9)
C140.0379 (15)0.0217 (14)0.0345 (15)0.0076 (11)0.0043 (11)0.0012 (11)
S1—C11.711 (2)C10—C111.484 (4)
S1—C61.751 (3)C13—C141.501 (4)
S2—C11.712 (2)C7—H7A0.9800
S2—C21.758 (2)C7—H7B0.9800
O1—C91.214 (3)C7—H7C0.9800
O2—C91.334 (3)C8—H8A0.9800
O2—C101.465 (3)C8—H8B0.9800
O3—C121.331 (3)C8—H8C0.9800
O3—C131.459 (3)C10—H10A0.9900
O4—C121.211 (3)C10—H10B0.9900
C1—C41.386 (3)C11—H11A0.9800
C2—C31.360 (3)C11—H11B0.9800
C2—C91.475 (3)C11—H11C0.9800
C3—C41.437 (3)C13—H13A0.9900
C3—C71.495 (3)C13—H13B0.9900
C4—C51.441 (3)C14—H14A0.9800
C5—C61.373 (3)C14—H14B0.9800
C5—C81.495 (4)C14—H14C0.9800
C6—C121.472 (3)
C1—S1—C689.57 (11)C3—C7—H7C109.00
C1—S2—C289.39 (11)H7A—C7—H7B109.00
C9—O2—C10114.48 (17)H7A—C7—H7C109.00
C12—O3—C13115.57 (17)H7B—C7—H7C109.00
S1—C1—S2132.34 (15)C5—C8—H8A109.00
S1—C1—C4113.81 (17)C5—C8—H8B109.00
S2—C1—C4113.85 (16)C5—C8—H8C109.00
S2—C2—C3113.92 (16)H8A—C8—H8B110.00
S2—C2—C9118.18 (18)H8A—C8—H8C109.00
C3—C2—C9127.9 (2)H8B—C8—H8C109.00
C2—C3—C4111.0 (2)O2—C10—H10A110.00
C2—C3—C7124.9 (2)O2—C10—H10B110.00
C4—C3—C7124.1 (2)C11—C10—H10A110.00
C1—C4—C3111.8 (2)C11—C10—H10B110.00
C1—C4—C5112.16 (19)H10A—C10—H10B108.00
C3—C4—C5136.0 (2)C10—C11—H11A109.00
C4—C5—C6110.3 (2)C10—C11—H11B109.00
C4—C5—C8124.45 (19)C10—C11—H11C109.00
C6—C5—C8125.3 (2)H11A—C11—H11B109.00
S1—C6—C5114.18 (18)H11A—C11—H11C109.00
S1—C6—C12113.10 (17)H11B—C11—H11C109.00
C5—C6—C12132.7 (2)O3—C13—H13A110.00
O1—C9—O2123.4 (2)O3—C13—H13B110.00
O1—C9—C2125.1 (2)C14—C13—H13A110.00
O2—C9—C2111.59 (19)C14—C13—H13B110.00
O2—C10—C11108.25 (19)H13A—C13—H13B109.00
O3—C12—O4124.3 (2)C13—C14—H14A109.00
O3—C12—C6113.56 (19)C13—C14—H14B109.00
O4—C12—C6122.1 (2)C13—C14—H14C109.00
O3—C13—C14106.76 (18)H14A—C14—H14B110.00
C3—C7—H7A109.00H14A—C14—H14C109.00
C3—C7—H7B109.00H14B—C14—H14C109.00
C6—S1—C1—S2179.7 (2)C9—C2—C3—C72.3 (4)
C6—S1—C1—C40.3 (2)S2—C2—C9—O1−175.95 (19)
C1—S1—C6—C5−0.3 (2)S2—C2—C9—O24.8 (3)
C1—S1—C6—C12179.25 (18)C3—C2—C9—O14.7 (4)
C2—S2—C1—S1−179.2 (2)C3—C2—C9—O2−174.6 (2)
C2—S2—C1—C40.3 (2)C2—C3—C4—C1−0.5 (3)
C1—S2—C2—C3−0.6 (2)C2—C3—C4—C5179.2 (3)
C1—S2—C2—C9180.0 (2)C7—C3—C4—C1177.4 (2)
C10—O2—C9—O1−2.0 (3)C7—C3—C4—C5−3.0 (4)
C10—O2—C9—C2177.3 (2)C1—C4—C5—C6−0.1 (3)
C9—O2—C10—C11−176.3 (2)C1—C4—C5—C8178.6 (2)
C13—O3—C12—O4−0.1 (3)C3—C4—C5—C6−179.8 (3)
C13—O3—C12—C6179.74 (19)C3—C4—C5—C8−1.0 (4)
C12—O3—C13—C14−172.8 (2)C4—C5—C6—S10.3 (3)
S1—C1—C4—C3179.62 (17)C4—C5—C6—C12−179.2 (2)
S1—C1—C4—C5−0.1 (3)C8—C5—C6—S1−178.41 (19)
S2—C1—C4—C30.1 (3)C8—C5—C6—C122.1 (4)
S2—C1—C4—C5−179.66 (17)S1—C6—C12—O3176.14 (16)
S2—C2—C3—C40.7 (3)S1—C6—C12—O4−4.0 (3)
S2—C2—C3—C7−177.17 (19)C5—C6—C12—O3−4.4 (4)
C9—C2—C3—C4−179.9 (2)C5—C6—C12—O4175.5 (3)
D—H···AD—HH···AD···AD—H···A
C7—H7A···O10.982.222.980 (3)133
C8—H8A···O30.982.232.909 (3)125
C11—H11A···O4i0.982.533.471 (3)161
C8—H8C···Cg2ii0.982.743.578 (3)144
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 is the centroid of the S2/C1–C4 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C7—H7A⋯O10.982.222.980 (3)133
C8—H8A⋯O30.982.232.909 (3)125
C11—H11A⋯O4i 0.982.533.471 (3)161
C8—H8CCg2ii 0.982.743.578 (3)144

Symmetry codes: (i) ; (ii) .

  12 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Novel cyano- and amidino-substituted derivatives of thieno[2,3-b]- and thieno[3,2-b]thiophene-2-carboxanilides and thieno[3',2':4,5]thieno- and thieno[2',3':4,5]thieno [2,3-c]quinolones: synthesis, photochemical synthesis, DNA binding, and antitumor evaluation.

Authors:  Ivana Jarak; Marijeta Kralj; Ivo Piantanida; Lidija Suman; Mladen Zinić; Kresimir Pavelić; Grace Karminski-Zamola
Journal:  Bioorg Med Chem       Date:  2006-01-10       Impact factor: 3.641

3.  Non-peptide GPIIb/IIIa inhibitors. 20. Centrally constrained thienothiophene alpha-sulfonamides are potent, long acting in vivo inhibitors of platelet aggregation.

Authors:  M S Egbertson; J J Cook; B Bednar; J D Prugh; R A Bednar; S L Gaul; R J Gould; G D Hartman; C F Homnick; M A Holahan; L A Libby; J J Lynch; R J Lynch; G R Sitko; M T Stranieri; L M Vassallo
Journal:  J Med Chem       Date:  1999-07-01       Impact factor: 7.446

4.  Stable polythiophene semiconductors incorporating thieno[2,3-b]thiophene.

Authors:  Martin Heeney; Clare Bailey; Kristijonas Genevicius; Maxim Shkunov; David Sparrowe; Steve Tierney; Iain McCulloch
Journal:  J Am Chem Soc       Date:  2005-02-02       Impact factor: 15.419

5.  Alkylsubstituted thienothiophene semiconducting materials: structure-property relationships.

Authors:  Mingqian He; Jianfeng Li; Michael L Sorensen; Feixia Zhang; Robert R Hancock; Hon Hang Fong; Vladimir A Pozdin; Detlef-M Smilgies; George G Malliaras
Journal:  J Am Chem Soc       Date:  2009-08-26       Impact factor: 15.419

6.  Diethyl 3,4-bis(acetoxy-meth-yl)thieno[2,3-b]thio-phene-2,5-dicarboxyl-ate.

Authors:  B Gunasekaran; R Sureshbabu; A K Mohanakrishnan; G Chakkaravarthi; V Manivannan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-12

7.  Diethyl 3-amino-4-[(triphenyl-phosphor-anyl-idene)amino]thieno[2,3-b]thio-phene-2,5-dicarboxyl-ate.

Authors:  Xiang Wang; Yan Li; Ming-Guo Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-07

8.  Comprehensive and facile synthesis of some functionalized bis-heterocyclic compounds containing a thieno[2,3-b]thiophene motif.

Authors:  Yahia N Mabkhot; Assem Barakat; Abdullah M Al-Majid; Saeed A Alshahrani
Journal:  Int J Mol Sci       Date:  2012-02-20       Impact factor: 6.208

9.  Facile and convenient synthesis of new thieno[2,3-b]-thiophene derivatives.

Authors:  Yahia Nasser Mabkhot; Nabila abd Elshafy Kheder; Abdullah Mohammad Al-Majid
Journal:  Molecules       Date:  2010-12-20       Impact factor: 4.411

10.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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