Literature DB >> 23475189

A study of Caenorhabditis elegans DAF-2 mutants by metabolomics and differential correlation networks.

Cecilia Castro1, Jan Krumsiek, Nicolas J Lehrbach, Steven A Murfitt, Eric A Miska, Julian L Griffin.   

Abstract

daf-2 is one of the most studied mutants in C. elegans: it contains a deletion in the gene orthologue of the insulin/insulin-like growth factor (IGF) receptor. Using high resolution (1)H NMR spectroscopy, metabolomics has helped to dissect the metabolic consequences of altered daf-2 signalling. Here, we present a detailed metabolomic analysis of daf-2, using NMR spectroscopy, gas chromatography mass spectrometry (GC-MS) and liquid chromatography mass spectrometry (LC-MS) to integrate information from different pathways. We have then used Pearson and partial correlation analysis to build networks to explore the central role of daf-2 in regulating fatty acid and amino acid metabolism. The results show the tight regulation between these two parts of the metabolome.

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Year:  2013        PMID: 23475189      PMCID: PMC7002165          DOI: 10.1039/c3mb25539e

Source DB:  PubMed          Journal:  Mol Biosyst        ISSN: 1742-2051


  20 in total

1.  Diapause-associated metabolic traits reiterated in long-lived daf-2 mutants in the nematode Caenorhabditis elegans.

Authors:  Joshua J McElwee; Eugene Schuster; Eric Blanc; Janet Thornton; David Gems
Journal:  Mech Ageing Dev       Date:  2006-03-07       Impact factor: 5.432

2.  A C. elegans mutant that lives twice as long as wild type.

Authors:  C Kenyon; J Chang; E Gensch; A Rudner; R Tabtiang
Journal:  Nature       Date:  1993-12-02       Impact factor: 49.962

3.  Fatty acid desaturation and the regulation of adiposity in Caenorhabditis elegans.

Authors:  Trisha J Brock; John Browse; Jennifer L Watts
Journal:  Genetics       Date:  2007-04-15       Impact factor: 4.562

4.  Impaired insulin/IGF1 signaling extends life span by promoting mitochondrial L-proline catabolism to induce a transient ROS signal.

Authors:  Kim Zarse; Sebastian Schmeisser; Marco Groth; Steffen Priebe; Gregor Beuster; Doreen Kuhlow; Reinhard Guthke; Matthias Platzer; C Ronald Kahn; Michael Ristow
Journal:  Cell Metab       Date:  2012-04-04       Impact factor: 27.287

5.  Two pleiotropic classes of daf-2 mutation affect larval arrest, adult behavior, reproduction and longevity in Caenorhabditis elegans.

Authors:  D Gems; A J Sutton; M L Sundermeyer; P S Albert; K V King; M L Edgley; P L Larsen; D L Riddle
Journal:  Genetics       Date:  1998-09       Impact factor: 4.562

6.  A metabolic signature of long life in Caenorhabditis elegans.

Authors:  Silke Fuchs; Jacob G Bundy; Sarah K Davies; Jonathan M Viney; Jonathan S Swire; Armand M Leroi
Journal:  BMC Biol       Date:  2010-02-10       Impact factor: 7.431

7.  Gene activities that mediate increased life span of C. elegans insulin-like signaling mutants.

Authors:  Andrew V Samuelson; Christopher E Carr; Gary Ruvkun
Journal:  Genes Dev       Date:  2007-11-15       Impact factor: 11.361

Review 8.  Genome sequence of the nematode C. elegans: a platform for investigating biology.

Authors: 
Journal:  Science       Date:  1998-12-11       Impact factor: 47.728

9.  Genome-wide RNAi analysis of Caenorhabditis elegans fat regulatory genes.

Authors:  Kaveh Ashrafi; Francesca Y Chang; Jennifer L Watts; Andrew G Fraser; Ravi S Kamath; Julie Ahringer; Gary Ruvkun
Journal:  Nature       Date:  2003-01-16       Impact factor: 49.962

10.  Post-developmental microRNA expression is required for normal physiology, and regulates aging in parallel to insulin/IGF-1 signaling in C. elegans.

Authors:  Nicolas J Lehrbach; Cecilia Castro; Kenneth J Murfitt; Cei Abreu-Goodger; Julian L Griffin; Eric A Miska
Journal:  RNA       Date:  2012-10-24       Impact factor: 4.942

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  21 in total

Review 1.  Linking Lipid Metabolism to Chromatin Regulation in Aging.

Authors:  Katharina Papsdorf; Anne Brunet
Journal:  Trends Cell Biol       Date:  2018-10-10       Impact factor: 20.808

2.  Reconstruction and analysis of correlation networks based on GC-MS metabolomics data for young hypertensive men.

Authors:  Le Wang; Entai Hou; Lijun Wang; Yanjun Wang; Lingjian Yang; Xiaohui Zheng; Guangqi Xie; Qiong Sun; Mingyu Liang; Zhongmin Tian
Journal:  Anal Chim Acta       Date:  2014-11-11       Impact factor: 6.558

3.  Glucose induces sensitivity to oxygen deprivation and modulates insulin/IGF-1 signaling and lipid biosynthesis in Caenorhabditis elegans.

Authors:  Anastacia M Garcia; Mary L Ladage; Dennis R Dumesnil; Khadiza Zaman; Vladimir Shulaev; Rajeev K Azad; Pamela A Padilla
Journal:  Genetics       Date:  2015-03-10       Impact factor: 4.562

Review 4.  Caenorhabditis elegans metabolic gene regulatory networks govern the cellular economy.

Authors:  Emma Watson; Albertha J M Walhout
Journal:  Trends Endocrinol Metab       Date:  2014-04-12       Impact factor: 12.015

5.  Isotopic ratio outlier analysis global metabolomics of Caenorhabditis elegans.

Authors:  Gregory S Stupp; Chaevien S Clendinen; Ramadan Ajredini; Mark A Szewc; Timothy Garrett; Robert F Menger; Richard A Yost; Chris Beecher; Arthur S Edison
Journal:  Anal Chem       Date:  2013-12-04       Impact factor: 6.986

Review 6.  Quo Vadis Caenorhabditis elegans Metabolomics-A Review of Current Methods and Applications to Explore Metabolism in the Nematode.

Authors:  Liesa Salzer; Michael Witting
Journal:  Metabolites       Date:  2021-04-29

Review 7.  Proteomics and metabolomics in ageing research: from biomarkers to systems biology.

Authors:  Jessica M Hoffman; Yang Lyu; Scott D Pletcher; Daniel E L Promislow
Journal:  Essays Biochem       Date:  2017-07-11       Impact factor: 7.258

8.  Invariance and plasticity in the Drosophila melanogaster metabolomic network in response to temperature.

Authors:  Ramkumar Hariharan; Jessica M Hoffman; Ariel S Thomas; Quinlyn A Soltow; Dean P Jones; Daniel E L Promislow
Journal:  BMC Syst Biol       Date:  2014-12-24

9.  Analysis of the effect of the mitochondrial prohibitin complex, a context-dependent modulator of longevity, on the C. elegans metabolome.

Authors:  Artur B Lourenço; Celia Muñoz-Jiménez; Mónica Venegas-Calerón; Marta Artal-Sanz
Journal:  Biochim Biophys Acta       Date:  2015-06-17

10.  Metabolomics changes in a rat model of obstructive jaundice: mapping to metabolism of amino acids, carbohydrates and lipids as well as oxidative stress.

Authors:  Yue Long; Xin Dong; Yawei Yuan; Jinqiang Huang; Jiangang Song; Yumin Sun; Zhijie Lu; Liqun Yang; Weifeng Yu
Journal:  J Clin Biochem Nutr       Date:  2015-06-04       Impact factor: 3.114

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