Literature DB >> 23468809

Dimethyl 2,6-dimethyl-4-{3-[4-(methyl-sulfan-yl)phen-yl]-1H-pyrazol-4-yl}-1,4-dihydro-pyridine-3,5-dicarboxyl-ate monohydrate.

Arun M Islor1, A M Vijesh, Thomas Gerber, Eric Hosten, Richard Betz.   

Abstract

In the title compound, C21H23N3O4S·H2O, the methyl-sulfanyl group is disordered over two sets of sites with site-occupancy factors of 0.631 (11) and 0.369 (11). The dihydro-pyridine ring adopts an E4 conformation. In the crystal, classical O-H⋯N, O-H⋯O and N-H⋯O hydrogen bonds, as well as C-H⋯O and C-H⋯S contacts, connect the mol-ecules into a three-dimensional network.

Entities:  

Year:  2012        PMID: 23468809      PMCID: PMC3588844          DOI: 10.1107/S1600536812045333

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general information about the pharmacological importance of 1,4-dihydro­pyridine-based drugs, see: Janis & Triggle (1983 ▶); Boecker & Guengerich (1986 ▶); Gordeev et al. (1996 ▶); Buhler & Kiowski (1987 ▶); Vo et al. (1995 ▶). For puckering analysis of cyclic motifs, see: Cremer & Pople (1975 ▶). For graph-set analysis of hydrogen bonds, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶).

Experimental

Crystal data

C21H23N3O4S·H2O M = 431.50 Monoclinic, a = 10.5542 (2) Å b = 14.7260 (2) Å c = 14.5377 (2) Å β = 110.106 (1)° V = 2121.77 (6) Å3 Z = 4 Mo Kα radiation μ = 0.19 mm−1 T = 200 K 0.27 × 0.23 × 0.20 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.950, T max = 0.963 20236 measured reflections 5267 independent reflections 4311 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.111 S = 1.03 5267 reflections 312 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2010 ▶); cell refinement: SAINT (Bruker, 2010 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812045333/rn2110sup1.cif Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812045333/rn2110Isup2.cdx Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812045333/rn2110Isup3.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812045333/rn2110Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H23N3O4S·H2OF(000) = 912
Mr = 431.50Dx = 1.351 Mg m3
Monoclinic, P21/cMelting point = 467–469 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 10.5542 (2) ÅCell parameters from 9343 reflections
b = 14.7260 (2) Åθ = 2.5–28.2°
c = 14.5377 (2) ŵ = 0.19 mm1
β = 110.106 (1)°T = 200 K
V = 2121.77 (6) Å3Block, colourless
Z = 40.27 × 0.23 × 0.20 mm
Bruker APEXII CCD diffractometer5267 independent reflections
Radiation source: fine-focus sealed tube4311 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.019
φ and ω scansθmax = 28.3°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −14→13
Tmin = 0.950, Tmax = 0.963k = −14→19
20236 measured reflectionsl = −13→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.111H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.056P)2 + 0.7436P] where P = (Fo2 + 2Fc2)/3
5267 reflections(Δ/σ)max = 0.001
312 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.27 e Å3
xyzUiso*/UeqOcc. (<1)
O10.93564 (10)0.59820 (7)0.43428 (7)0.0310 (2)
O20.78574 (10)0.70794 (7)0.42595 (7)0.0347 (2)
O30.87427 (11)0.35098 (7)0.22830 (8)0.0376 (3)
O40.69528 (12)0.32275 (8)0.09516 (8)0.0422 (3)
O80.73981 (13)0.12824 (12)0.41554 (11)0.0621 (4)
H8A0.820 (3)0.1239 (17)0.4195 (18)0.073 (7)*
H8B0.743 (3)0.1385 (17)0.473 (2)0.075 (8)*
N210.88151 (11)0.65657 (8)0.07373 (8)0.0278 (2)
H210.8649 (18)0.6971 (13)0.0262 (13)0.041 (5)*
N220.99846 (12)0.60935 (8)0.10597 (8)0.0294 (3)
N310.51897 (12)0.55198 (8)0.18783 (9)0.0286 (2)
H31A0.431 (2)0.5681 (12)0.1579 (13)0.043 (5)*
C20.81451 (13)0.63803 (8)0.39268 (9)0.0231 (2)
C31.02617 (15)0.64046 (11)0.52148 (10)0.0346 (3)
H3A0.98330.64300.57150.052*
H3B1.04720.70220.50610.052*
H3C1.10960.60500.54630.052*
C40.75074 (14)0.37067 (9)0.16581 (10)0.0270 (3)
C50.9362 (2)0.27053 (11)0.20646 (14)0.0543 (5)
H5A1.02600.26270.25590.081*
H5B0.94440.27660.14160.081*
H5C0.88030.21750.20700.081*
C60.51172 (15)0.66544 (11)0.30489 (12)0.0373 (3)
H6A0.55790.67670.37490.056*
H6B0.42340.63800.29480.056*
H6C0.49950.72300.26900.056*
C70.45802 (15)0.42238 (10)0.07938 (11)0.0347 (3)
H7A0.45350.36090.10380.052*
H7B0.47960.41910.01910.052*
H7C0.37070.45260.06580.052*
C111.10148 (13)0.49866 (9)0.23494 (10)0.0267 (3)
C121.14884 (14)0.49982 (10)0.33673 (11)0.0336 (3)
H121.10770.53890.37020.040*
C131.25535 (15)0.44469 (11)0.39020 (12)0.0384 (3)
H131.28660.44660.45970.046*
C141.31631 (14)0.38692 (10)0.34276 (12)0.0360 (3)
C151.26844 (18)0.38458 (12)0.24128 (13)0.0446 (4)
H151.30830.34440.20790.054*
C161.16273 (17)0.44037 (11)0.18802 (12)0.0398 (4)
H161.13190.43860.11850.048*
C210.98781 (13)0.55804 (8)0.17910 (9)0.0238 (3)
C220.86336 (12)0.57278 (8)0.19351 (9)0.0205 (2)
C230.79950 (13)0.63695 (8)0.12396 (9)0.0239 (3)
H230.71310.66260.11350.029*
C310.79937 (12)0.52258 (8)0.25760 (8)0.0200 (2)
H310.87130.48870.30950.024*
C320.72985 (12)0.58775 (8)0.30658 (9)0.0217 (2)
C330.59493 (13)0.60214 (9)0.26803 (9)0.0253 (3)
C340.56572 (13)0.47545 (9)0.15537 (9)0.0256 (3)
C350.69821 (13)0.45444 (8)0.19347 (9)0.0228 (2)
S1A1.4500 (2)0.31690 (16)0.41722 (17)0.0465 (5)0.631 (11)
C1A1.5934 (3)0.3614 (3)0.3947 (5)0.0589 (14)0.631 (11)
H1A1.67360.32610.43150.088*0.631 (11)
H1B1.60660.42500.41560.088*0.631 (11)
H1C1.57910.35750.32450.088*0.631 (11)
S1B1.4470 (4)0.3094 (3)0.4019 (4)0.0648 (12)0.369 (11)
C1B1.5788 (7)0.3823 (5)0.4539 (10)0.069 (3)0.369 (11)
H1D1.65790.34780.49390.104*0.369 (11)
H1E1.55360.42620.49530.104*0.369 (11)
H1F1.60020.41470.40220.104*0.369 (11)
U11U22U33U12U13U23
O10.0267 (5)0.0338 (5)0.0252 (5)0.0035 (4)−0.0004 (4)−0.0091 (4)
O20.0364 (5)0.0316 (5)0.0311 (5)0.0039 (4)0.0051 (4)−0.0119 (4)
O30.0451 (6)0.0263 (5)0.0333 (5)0.0110 (4)0.0031 (4)−0.0057 (4)
O40.0466 (6)0.0377 (6)0.0384 (6)−0.0048 (5)0.0098 (5)−0.0183 (5)
O80.0280 (6)0.1059 (13)0.0516 (8)−0.0074 (7)0.0129 (6)−0.0297 (8)
N210.0281 (6)0.0282 (6)0.0250 (5)0.0005 (4)0.0065 (4)0.0076 (5)
N220.0279 (6)0.0324 (6)0.0292 (6)0.0028 (5)0.0115 (5)0.0055 (5)
N310.0204 (5)0.0331 (6)0.0287 (6)−0.0013 (4)0.0039 (4)−0.0032 (5)
C20.0254 (6)0.0240 (6)0.0200 (6)−0.0012 (5)0.0080 (5)−0.0011 (5)
C30.0311 (7)0.0393 (8)0.0249 (7)−0.0018 (6)−0.0013 (5)−0.0074 (6)
C40.0353 (7)0.0219 (6)0.0248 (6)−0.0045 (5)0.0114 (5)−0.0010 (5)
C50.0691 (12)0.0330 (8)0.0528 (10)0.0237 (8)0.0107 (9)−0.0065 (8)
C60.0290 (7)0.0438 (8)0.0393 (8)0.0073 (6)0.0121 (6)−0.0071 (7)
C70.0308 (7)0.0377 (7)0.0314 (7)−0.0130 (6)0.0052 (6)−0.0059 (6)
C110.0242 (6)0.0268 (6)0.0304 (7)0.0024 (5)0.0113 (5)0.0036 (5)
C120.0297 (7)0.0388 (8)0.0308 (7)0.0075 (6)0.0084 (6)−0.0013 (6)
C130.0308 (7)0.0469 (9)0.0330 (8)0.0058 (6)0.0052 (6)0.0053 (7)
C140.0257 (7)0.0336 (7)0.0481 (9)0.0059 (6)0.0121 (6)0.0123 (6)
C150.0476 (9)0.0418 (9)0.0508 (10)0.0198 (7)0.0250 (8)0.0076 (7)
C160.0461 (9)0.0429 (8)0.0336 (8)0.0150 (7)0.0180 (7)0.0053 (7)
C210.0246 (6)0.0237 (6)0.0230 (6)0.0007 (5)0.0082 (5)0.0002 (5)
C220.0210 (5)0.0189 (5)0.0198 (5)−0.0022 (4)0.0046 (4)−0.0025 (4)
C230.0220 (6)0.0225 (6)0.0245 (6)−0.0023 (5)0.0045 (5)−0.0003 (5)
C310.0212 (5)0.0189 (5)0.0185 (5)−0.0008 (4)0.0049 (4)−0.0012 (4)
C320.0237 (6)0.0213 (5)0.0199 (6)−0.0006 (4)0.0070 (5)−0.0016 (5)
C330.0260 (6)0.0264 (6)0.0240 (6)−0.0009 (5)0.0090 (5)−0.0009 (5)
C340.0275 (6)0.0256 (6)0.0226 (6)−0.0071 (5)0.0071 (5)−0.0006 (5)
C350.0278 (6)0.0208 (6)0.0195 (5)−0.0053 (5)0.0078 (5)−0.0019 (5)
S1A0.0298 (7)0.0559 (11)0.0562 (8)0.0169 (7)0.0179 (5)0.0368 (7)
C1A0.0275 (14)0.051 (2)0.094 (3)−0.0008 (13)0.0159 (17)0.017 (2)
S1B0.0287 (12)0.0245 (10)0.121 (3)0.0001 (8)−0.0002 (13)−0.0005 (14)
C1B0.033 (3)0.053 (4)0.101 (8)−0.003 (2)−0.003 (3)0.013 (4)
O1—C21.3464 (16)C11—C161.387 (2)
O1—C31.4402 (16)C11—C121.390 (2)
O2—C21.2193 (16)C11—C211.4810 (17)
O3—C41.3397 (17)C12—C131.388 (2)
O3—C51.4403 (18)C12—H120.9500
O4—C41.2175 (16)C13—C141.385 (2)
O8—H8A0.83 (3)C13—H130.9500
O8—H8B0.84 (3)C14—C151.386 (2)
N21—C231.3417 (17)C14—S1B1.770 (4)
N21—N221.3524 (16)C14—S1A1.782 (3)
N21—H210.884 (19)C15—C161.388 (2)
N22—C211.3402 (17)C15—H150.9500
N31—C341.3770 (18)C16—H160.9500
N31—C331.3802 (17)C21—C221.4161 (17)
N31—H31A0.908 (19)C22—C231.3788 (17)
C2—C321.4644 (17)C22—C311.5177 (16)
C3—H3A0.9800C23—H230.9500
C3—H3B0.9800C31—C321.5250 (16)
C3—H3C0.9800C31—C351.5270 (16)
C4—C351.4642 (18)C31—H311.0000
C5—H5A0.9800C32—C331.3557 (18)
C5—H5B0.9800C34—C351.3511 (18)
C5—H5C0.9800S1A—C1A1.780 (4)
C6—C331.5004 (19)C1A—H1A0.9800
C6—H6A0.9800C1A—H1B0.9800
C6—H6B0.9800C1A—H1C0.9800
C6—H6C0.9800S1B—C1B1.713 (8)
C7—C341.5034 (17)C1B—H1D0.9800
C7—H7A0.9800C1B—H1E0.9800
C7—H7B0.9800C1B—H1F0.9800
C7—H7C0.9800
C2—O1—C3116.57 (10)C12—C13—H13119.8
C4—O3—C5115.99 (12)C13—C14—C15118.92 (13)
H8A—O8—H8B105 (2)C13—C14—S1B124.9 (2)
C23—N21—N22112.54 (11)C15—C14—S1B116.1 (2)
C23—N21—H21125.4 (12)C13—C14—S1A117.34 (15)
N22—N21—H21122.0 (12)C15—C14—S1A123.72 (15)
C21—N22—N21104.44 (11)C14—C15—C16120.55 (15)
C34—N31—C33123.70 (11)C14—C15—H15119.7
C34—N31—H31A118.4 (12)C16—C15—H15119.7
C33—N31—H31A117.7 (12)C11—C16—C15120.89 (15)
O2—C2—O1121.14 (11)C11—C16—H16119.6
O2—C2—C32127.16 (12)C15—C16—H16119.6
O1—C2—C32111.70 (10)N22—C21—C22111.46 (11)
O1—C3—H3A109.5N22—C21—C11119.65 (11)
O1—C3—H3B109.5C22—C21—C11128.85 (11)
H3A—C3—H3B109.5C23—C22—C21103.95 (11)
O1—C3—H3C109.5C23—C22—C31125.14 (11)
H3A—C3—H3C109.5C21—C22—C31130.33 (11)
H3B—C3—H3C109.5N21—C23—C22107.61 (11)
O4—C4—O3121.34 (13)N21—C23—H23126.2
O4—C4—C35127.04 (13)C22—C23—H23126.2
O3—C4—C35111.61 (11)C22—C31—C32111.54 (10)
O3—C5—H5A109.5C22—C31—C35108.10 (9)
O3—C5—H5B109.5C32—C31—C35110.55 (10)
H5A—C5—H5B109.5C22—C31—H31108.9
O3—C5—H5C109.5C32—C31—H31108.9
H5A—C5—H5C109.5C35—C31—H31108.9
H5B—C5—H5C109.5C33—C32—C2121.32 (11)
C33—C6—H6A109.5C33—C32—C31120.73 (11)
C33—C6—H6B109.5C2—C32—C31117.86 (10)
H6A—C6—H6B109.5C32—C33—N31119.22 (12)
C33—C6—H6C109.5C32—C33—C6127.59 (12)
H6A—C6—H6C109.5N31—C33—C6113.13 (12)
H6B—C6—H6C109.5C35—C34—N31119.29 (11)
C34—C7—H7A109.5C35—C34—C7126.64 (12)
C34—C7—H7B109.5N31—C34—C7114.07 (12)
H7A—C7—H7B109.5C34—C35—C4121.10 (11)
C34—C7—H7C109.5C34—C35—C31120.51 (11)
H7A—C7—H7C109.5C4—C35—C31118.04 (11)
H7B—C7—H7C109.5C1A—S1A—C14102.77 (15)
C16—C11—C12118.26 (13)C1B—S1B—C14100.9 (3)
C16—C11—C21121.51 (12)S1B—C1B—H1D109.5
C12—C11—C21120.23 (12)S1B—C1B—H1E109.5
C13—C12—C11120.98 (14)H1D—C1B—H1E109.5
C13—C12—H12119.5S1B—C1B—H1F109.5
C11—C12—H12119.5H1D—C1B—H1F109.5
C14—C13—C12120.39 (14)H1E—C1B—H1F109.5
C14—C13—H13119.8
C23—N21—N22—C210.26 (15)O2—C2—C32—C33−16.9 (2)
C3—O1—C2—O22.32 (19)O1—C2—C32—C33163.70 (12)
C3—O1—C2—C32−178.28 (11)O2—C2—C32—C31159.42 (13)
C5—O3—C4—O40.1 (2)O1—C2—C32—C31−19.94 (16)
C5—O3—C4—C35−178.85 (14)C22—C31—C32—C3397.79 (13)
C16—C11—C12—C130.5 (2)C35—C31—C32—C33−22.52 (16)
C21—C11—C12—C13−179.93 (13)C22—C31—C32—C2−78.60 (13)
C11—C12—C13—C14−0.3 (2)C35—C31—C32—C2161.10 (10)
C12—C13—C14—C15−0.5 (2)C2—C32—C33—N31−178.89 (11)
C12—C13—C14—S1B−176.74 (19)C31—C32—C33—N314.85 (19)
C12—C13—C14—S1A−178.72 (14)C2—C32—C33—C6−1.8 (2)
C13—C14—C15—C161.1 (3)C31—C32—C33—C6−178.10 (13)
S1B—C14—C15—C16177.66 (19)C34—N31—C33—C3213.4 (2)
S1A—C14—C15—C16179.19 (15)C34—N31—C33—C6−164.05 (13)
C12—C11—C16—C150.1 (2)C33—N31—C34—C35−10.2 (2)
C21—C11—C16—C15−179.48 (14)C33—N31—C34—C7168.98 (12)
C14—C15—C16—C11−0.9 (3)N31—C34—C35—C4175.98 (11)
N21—N22—C21—C22−0.05 (15)C7—C34—C35—C4−3.1 (2)
N21—N22—C21—C11−177.88 (11)N31—C34—C35—C31−10.96 (18)
C16—C11—C21—N22−49.61 (19)C7—C34—C35—C31169.94 (12)
C12—C11—C21—N22130.85 (14)O4—C4—C35—C3416.9 (2)
C16—C11—C21—C22132.99 (15)O3—C4—C35—C34−164.25 (12)
C12—C11—C21—C22−46.5 (2)O4—C4—C35—C31−156.34 (14)
N22—C21—C22—C23−0.16 (14)O3—C4—C35—C3122.52 (16)
C11—C21—C22—C23177.41 (13)C22—C31—C35—C34−96.68 (13)
N22—C21—C22—C31171.27 (12)C32—C31—C35—C3425.66 (16)
C11—C21—C22—C31−11.2 (2)C22—C31—C35—C476.59 (13)
N22—N21—C23—C22−0.37 (15)C32—C31—C35—C4−161.07 (11)
C21—C22—C23—N210.30 (13)C13—C14—S1A—C1A−112.7 (3)
C31—C22—C23—N21−171.71 (11)C15—C14—S1A—C1A69.2 (4)
C23—C22—C31—C32−49.64 (15)S1B—C14—S1A—C1A79.4 (13)
C21—C22—C31—C32140.55 (13)C13—C14—S1B—C1B−70.6 (7)
C23—C22—C31—C3572.09 (14)C15—C14—S1B—C1B113.1 (7)
C21—C22—C31—C35−97.72 (14)S1A—C14—S1B—C1B−57.5 (13)
D—H···AD—HH···AD···AD—H···A
O8—H8A···N22i0.83 (3)2.09 (3)2.8982 (18)167 (2)
O8—H8B···O4ii0.84 (3)2.09 (3)2.8989 (19)164 (2)
N21—H21···O2iii0.884 (19)1.985 (19)2.8505 (15)165.9 (17)
N31—H31A···O8iv0.908 (19)1.965 (19)2.8561 (18)166.6 (17)
C23—H23···S1Av0.952.793.637 (3)149
C31—H31···O11.002.352.7141 (14)101
C31—H31···O31.002.352.7246 (15)101
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O8—H8A⋯N22i 0.83 (3)2.09 (3)2.8982 (18)167 (2)
O8—H8B⋯O4ii 0.84 (3)2.09 (3)2.8989 (19)164 (2)
N21—H21⋯O2iii 0.884 (19)1.985 (19)2.8505 (15)165.9 (17)
N31—H31A⋯O8iv 0.908 (19)1.965 (19)2.8561 (18)166.6 (17)
C23—H23⋯S1A v 0.952.793.637 (3)149

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

Review 3.  New developments in Ca2+ channel antagonists.

Authors:  R A Janis; D J Triggle
Journal:  J Med Chem       Date:  1983-06       Impact factor: 7.446

Review 4.  Calcium antagonists in hypertension.

Authors:  F R Bühler; W Kiowski
Journal:  J Hypertens Suppl       Date:  1987-08

5.  Syntheses, calcium channel agonist-antagonist modulation activities, and voltage-clamp studies of isopropyl 1,4-dihydro-2,6-dimethyl-3-nitro-4-pyridinylpyridine-5-carboxylate racemates and enantiomers.

Authors:  D Vo; W C Matowe; M Ramesh; N Iqbal; M W Wolowyk; S E Howlett; E E Knaus
Journal:  J Med Chem       Date:  1995-07-21       Impact factor: 7.446

6.  Oxidation of 4-aryl- and 4-alkyl-substituted 2,6-dimethyl-3,5-bis(alkoxycarbonyl)-1,4-dihydropyridines by human liver microsomes and immunochemical evidence for the involvement of a form of cytochrome P-450.

Authors:  R H Böcker; F P Guengerich
Journal:  J Med Chem       Date:  1986-09       Impact factor: 7.446

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total

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