Literature DB >> 23468805

2-[(Adamantan-1-yl)amino-meth-yl]-4-chloro-phenol hemihydrate.

Xu-Dong Jin1, Xue-Yue Yin, Lu-Sha Xu, Chun-Hua Ge, Xiao-Hong Chang.   

Abstract

In the title compound, C17H22ClNO·0.5n class="Chemical">H2O, the water mol-ecule O atom resides on a twofold rotation axis. In the organic mol-ecule, the phenol group forms an intra-molecular O-H⋯N hydrogen bond. In the crystal, pairs of organic mol-ecules are hydrogen bonded through bridging solvent water mol-ecules, forming chains along the b-axis direction.

Entities:  

Year:  2012        PMID: 23468805      PMCID: PMC3588840          DOI: 10.1107/S1600536812045175

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and crystal structure of 2-[(adamantan-1-yl­amino)­meth­yl]phenol, see: Wang & Tao (2012 ▶). For the synthesis and applications of n class="Chemical">amantadine derivatives, see: Camps et al. (2008 ▶).

Experimental

Crystal data

C17H22ClNO·0.5n class="Chemical">H2O M = 300.82 Monoclinic, a = 25.469 (16) Å b = 6.365 (4) Å c = 18.306 (11) Å β = 91.815 (12)° V = 2966 (3) Å3 Z = 8 Mo Kα radiation μ = 0.26 mm−1 T = 296 K 0.35 × 0.30 × 0.16 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.915, T max = 0.960 6372 measured reflections 2606 independent reflections 1798 reflections with I > 2σ(I) R int = 0.098

Refinement

R[F 2 > 2σ(F 2)] = 0.069 wR(F 2) = 0.216 S = 1.08 2606 reflections 198 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.39 e Å−3 Δρmin = −0.40 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812045175/ld2073sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812045175/ld2073Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812045175/ld2073Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H22ClNO·0.5H2OF(000) = 1288
Mr = 300.82Dx = 1.347 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 941 reflections
a = 25.469 (16) Åθ = 3.3–22.6°
b = 6.365 (4) ŵ = 0.26 mm1
c = 18.306 (11) ÅT = 296 K
β = 91.815 (12)°Block, yellow
V = 2966 (3) Å30.35 × 0.30 × 0.16 mm
Z = 8
Bruker APEXII CCD area-detector diffractometer2606 independent reflections
Radiation source: fine-focus sealed tube1798 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.098
φ and ω scansθmax = 25.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −30→28
Tmin = 0.915, Tmax = 0.960k = −7→7
6372 measured reflectionsl = −13→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.069Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.216H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0716P)2 + 4.2412P] where P = (Fo2 + 2Fc2)/3
2606 reflections(Δ/σ)max = 0.001
198 parametersΔρmax = 0.39 e Å3
3 restraintsΔρmin = −0.40 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.68802 (17)0.9819 (7)0.1855 (2)0.0245 (10)
H1C0.67181.08570.21640.029*
H1D0.72541.01150.18470.029*
C20.67926 (18)0.7615 (7)0.2166 (2)0.0276 (11)
H20.69480.75260.26620.033*
C30.61919 (16)0.7207 (7)0.2187 (2)0.0225 (10)
H3A0.61280.58280.23920.027*
H3B0.60300.82460.24950.027*
C40.59505 (16)0.7331 (6)0.1410 (2)0.0181 (9)
C50.60470 (15)0.9535 (6)0.1103 (2)0.0194 (9)
H5A0.58841.05770.14100.023*
H5B0.58900.96460.06150.023*
C60.66397 (17)0.9950 (7)0.1079 (2)0.0222 (10)
H60.67001.13540.08790.027*
C70.68971 (16)0.8294 (6)0.0594 (2)0.0194 (9)
H7A0.67480.83770.01010.023*
H7B0.72710.85600.05750.023*
C80.70416 (16)0.5981 (7)0.1683 (3)0.0256 (10)
H8A0.69850.45900.18820.031*
H8B0.74170.62210.16710.031*
C90.68029 (16)0.6101 (6)0.0909 (2)0.0217 (10)
H90.69670.50420.06010.026*
C100.62049 (16)0.5697 (7)0.0927 (2)0.0215 (10)
H10A0.60520.57760.04350.026*
H10B0.61400.43010.11170.026*
C110.50199 (15)0.7241 (6)0.0828 (2)0.0195 (9)
H11A0.49700.87390.07580.023*
H11B0.51730.66690.03930.023*
C120.45058 (16)0.6210 (6)0.0955 (2)0.0182 (9)
C130.44999 (15)0.4119 (6)0.1226 (2)0.0190 (9)
C140.40219 (17)0.3142 (7)0.1333 (2)0.0225 (10)
H140.40170.17680.15060.027*
C150.35494 (16)0.4183 (7)0.1187 (2)0.0220 (9)
H150.32300.35220.12630.026*
C160.35647 (16)0.6241 (7)0.0923 (2)0.0196 (9)
C170.40353 (16)0.7250 (6)0.0811 (2)0.0184 (9)
H170.40370.86260.06400.022*
Cl10.29758 (4)0.75941 (17)0.07489 (6)0.0262 (4)
H10.5251 (19)0.367 (15)0.133 (6)0.16 (5)*
H1A0.5178 (18)0.748 (7)0.181 (2)0.045 (16)*
N10.53801 (14)0.6858 (6)0.14802 (19)0.0207 (8)
O10.49570 (13)0.3128 (5)0.13804 (18)0.0272 (8)
O1W0.50001.0204 (8)0.25000.0532 (17)
H1W0.491 (2)1.097 (7)0.286 (2)0.040 (16)*
U11U22U33U12U13U23
C10.025 (2)0.030 (2)0.019 (2)−0.0099 (19)0.0030 (17)−0.0067 (19)
C20.027 (2)0.038 (3)0.017 (2)−0.005 (2)−0.0043 (18)0.005 (2)
C30.021 (2)0.028 (2)0.019 (2)−0.0037 (18)0.0025 (17)0.0021 (18)
C40.017 (2)0.015 (2)0.022 (2)−0.0023 (16)0.0028 (16)0.0003 (17)
C50.019 (2)0.020 (2)0.020 (2)0.0036 (17)0.0064 (16)−0.0012 (17)
C60.029 (2)0.016 (2)0.022 (2)−0.0015 (18)0.0032 (18)−0.0026 (18)
C70.019 (2)0.020 (2)0.020 (2)−0.0029 (17)0.0056 (16)−0.0023 (17)
C80.015 (2)0.025 (2)0.036 (3)−0.0031 (18)0.0000 (18)0.006 (2)
C90.020 (2)0.018 (2)0.028 (3)0.0019 (17)0.0057 (17)−0.0041 (18)
C100.025 (2)0.018 (2)0.021 (2)−0.0047 (18)0.0019 (17)−0.0019 (17)
C110.018 (2)0.022 (2)0.019 (2)0.0006 (17)−0.0007 (16)0.0023 (17)
C120.024 (2)0.018 (2)0.013 (2)0.0003 (17)−0.0001 (16)−0.0017 (16)
C130.021 (2)0.021 (2)0.016 (2)0.0025 (17)0.0014 (16)−0.0028 (17)
C140.030 (2)0.015 (2)0.022 (2)−0.0027 (18)−0.0010 (18)0.0008 (18)
C150.021 (2)0.029 (2)0.016 (2)−0.0024 (18)−0.0002 (16)−0.0037 (18)
C160.022 (2)0.026 (2)0.011 (2)0.0057 (18)−0.0022 (16)−0.0013 (17)
C170.024 (2)0.018 (2)0.013 (2)0.0010 (17)0.0009 (16)0.0015 (16)
Cl10.0204 (6)0.0357 (7)0.0225 (6)0.0044 (5)0.0000 (4)0.0045 (5)
N10.0196 (18)0.029 (2)0.0139 (19)0.0023 (16)−0.0018 (14)−0.0034 (15)
O10.0271 (18)0.0216 (16)0.0326 (19)0.0043 (14)−0.0043 (14)0.0000 (14)
O1W0.037 (3)0.017 (3)0.106 (6)0.0000.012 (3)0.000
C1—C61.531 (6)C8—H8B0.9700
C1—C21.533 (6)C9—C101.546 (6)
C1—H1C0.9700C9—H90.9800
C1—H1D0.9700C10—H10A0.9700
C2—C81.517 (6)C10—H10B0.9700
C2—C31.553 (6)C11—C121.489 (6)
C2—H20.9800C11—N11.502 (5)
C3—C41.534 (6)C11—H11A0.9700
C3—H3A0.9700C11—H11B0.9700
C3—H3B0.9700C12—C171.387 (6)
C4—N11.493 (5)C12—C131.421 (6)
C4—C101.523 (6)C13—O11.346 (5)
C4—C51.534 (5)C13—C141.387 (6)
C5—C61.534 (6)C14—C151.392 (6)
C5—H5A0.9700C14—H140.9300
C5—H5B0.9700C15—C161.397 (6)
C6—C71.539 (6)C15—H150.9300
C6—H60.9800C16—C171.381 (6)
C7—C91.532 (6)C16—Cl11.750 (4)
C7—H7A0.9700C17—H170.9300
C7—H7B0.9700N1—H1A0.90 (2)
C8—C91.524 (6)O1—H10.83 (2)
C8—H8A0.9700O1W—H1W0.847 (19)
C6—C1—C2109.6 (3)C9—C8—H8A109.6
C6—C1—H1C109.8C2—C8—H8B109.6
C2—C1—H1C109.8C9—C8—H8B109.6
C6—C1—H1D109.8H8A—C8—H8B108.1
C2—C1—H1D109.8C8—C9—C7109.4 (3)
H1C—C1—H1D108.2C8—C9—C10109.7 (3)
C8—C2—C1110.0 (4)C7—C9—C10109.0 (3)
C8—C2—C3109.3 (4)C8—C9—H9109.6
C1—C2—C3108.5 (4)C7—C9—H9109.6
C8—C2—H2109.7C10—C9—H9109.6
C1—C2—H2109.7C4—C10—C9109.6 (3)
C3—C2—H2109.7C4—C10—H10A109.7
C4—C3—C2109.5 (3)C9—C10—H10A109.7
C4—C3—H3A109.8C4—C10—H10B109.7
C2—C3—H3A109.8C9—C10—H10B109.7
C4—C3—H3B109.8H10A—C10—H10B108.2
C2—C3—H3B109.8C12—C11—N1108.9 (3)
H3A—C3—H3B108.2C12—C11—H11A109.9
N1—C4—C10110.2 (3)N1—C11—H11A109.9
N1—C4—C5112.6 (3)C12—C11—H11B109.9
C10—C4—C5109.7 (3)N1—C11—H11B109.9
N1—C4—C3105.8 (3)H11A—C11—H11B108.3
C10—C4—C3109.7 (3)C17—C12—C13119.7 (4)
C5—C4—C3108.8 (3)C17—C12—C11121.3 (4)
C4—C5—C6109.7 (3)C13—C12—C11119.1 (3)
C4—C5—H5A109.7O1—C13—C14121.2 (4)
C6—C5—H5A109.7O1—C13—C12119.6 (4)
C4—C5—H5B109.7C14—C13—C12119.3 (4)
C6—C5—H5B109.7C13—C14—C15121.1 (4)
H5A—C5—H5B108.2C13—C14—H14119.4
C1—C6—C5109.2 (3)C15—C14—H14119.4
C1—C6—C7109.5 (3)C14—C15—C16118.6 (4)
C5—C6—C7109.7 (3)C14—C15—H15120.7
C1—C6—H6109.5C16—C15—H15120.7
C5—C6—H6109.5C17—C16—C15121.4 (4)
C7—C6—H6109.5C17—C16—Cl1119.2 (3)
C9—C7—C6109.4 (3)C15—C16—Cl1119.4 (3)
C9—C7—H7A109.8C16—C17—C12119.9 (4)
C6—C7—H7A109.8C16—C17—H17120.0
C9—C7—H7B109.8C12—C17—H17120.0
C6—C7—H7B109.8C4—N1—C11118.0 (3)
H7A—C7—H7B108.2C4—N1—H1A123 (4)
C2—C8—C9110.2 (3)C11—N1—H1A96 (4)
C2—C8—H8A109.6C13—O1—H1124 (7)
C6—C1—C2—C859.0 (5)C5—C4—C10—C960.1 (4)
C6—C1—C2—C3−60.5 (4)C3—C4—C10—C9−59.4 (4)
C8—C2—C3—C4−59.4 (4)C8—C9—C10—C459.3 (4)
C1—C2—C3—C460.6 (4)C7—C9—C10—C4−60.5 (4)
C2—C3—C4—N1178.3 (3)N1—C11—C12—C17134.1 (4)
C2—C3—C4—C1059.5 (4)N1—C11—C12—C13−46.0 (5)
C2—C3—C4—C5−60.5 (4)C17—C12—C13—O1−178.6 (4)
N1—C4—C5—C6177.4 (3)C11—C12—C13—O11.5 (6)
C10—C4—C5—C6−59.5 (4)C17—C12—C13—C140.9 (6)
C3—C4—C5—C660.5 (4)C11—C12—C13—C14−179.0 (4)
C2—C1—C6—C560.9 (4)O1—C13—C14—C15178.8 (4)
C2—C1—C6—C7−59.2 (4)C12—C13—C14—C15−0.7 (6)
C4—C5—C6—C1−60.7 (4)C13—C14—C15—C160.4 (6)
C4—C5—C6—C759.3 (4)C14—C15—C16—C17−0.4 (6)
C1—C6—C7—C959.9 (4)C14—C15—C16—Cl1−178.9 (3)
C5—C6—C7—C9−59.9 (4)C15—C16—C17—C120.7 (6)
C1—C2—C8—C9−59.3 (4)Cl1—C16—C17—C12179.2 (3)
C3—C2—C8—C959.7 (4)C13—C12—C17—C16−0.9 (6)
C2—C8—C9—C759.7 (4)C11—C12—C17—C16179.0 (4)
C2—C8—C9—C10−59.8 (4)C10—C4—N1—C11−72.3 (4)
C6—C7—C9—C8−59.8 (4)C5—C4—N1—C1150.5 (5)
C6—C7—C9—C1060.1 (4)C3—C4—N1—C11169.2 (3)
N1—C4—C10—C9−175.5 (3)C12—C11—N1—C4166.7 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.83 (6)2.07 (9)2.611 (5)122 (7)
O1W—H1W···O1i0.84 (4)1.99 (4)2.768 (5)153 (5)
N1—H1A···O1W0.90 (4)2.20 (4)3.012 (5)150 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N10.83 (6)2.07 (9)2.611 (5)122 (7)
O1W—H1W⋯O1i 0.84 (4)1.99 (4)2.768 (5)153 (5)
N1—H1A⋯O1W 0.90 (4)2.20 (4)3.012 (5)150 (4)

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-[(Adamantan-1-yl-amino)-meth-yl]phenol.

Authors:  Ying-Chun Wang; Rong Tao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-07

3.  Synthesis and pharmacological evaluation of several ring-contracted amantadine analogs.

Authors:  Pelayo Camps; María D Duque; Santiago Vázquez; Lieve Naesens; Erik De Clercq; Francesc X Sureda; Marta López-Querol; Antoni Camins; Mercè Pallàs; S Radhika Prathalingam; John M Kelly; Vanessa Romero; Dolores Ivorra; Diego Cortés
Journal:  Bioorg Med Chem       Date:  2008-10-17       Impact factor: 3.641

  3 in total

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