Literature DB >> 23468784

Diethyl 2,6-dimethyl-4-[5-(4-methyl-phen-yl)-1H-pyrazol-4-yl]-1,4-dihydro-pyridine-3,5-dicarboxyl-ate.

Arun M Islor1, Shridhar Malladi, Sandeep Telkar, Thomas Gerber, Eric Hosten, Richard Betz.   

Abstract

In the title compound, C23H27N3O4, the dihydro-pyridine ring adopts a (1,4)B conformation. Intra-molecular C-H⋯O contacts occur. In the crystal, N-H⋯O and N-H⋯N hydrogen bonds and C-H⋯N contacts connect the mol-ecules into strands along the a-axis direction.

Entities:  

Year:  2012        PMID: 23468784      PMCID: PMC3588819          DOI: 10.1107/S1600536812044649

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological and pharmaceutical importance of dihydro­pyridine compounds, see: Stout & Meyers (1982 ▶); Vijesh et al. (2011 ▶); Boecker & Guengerich (1986 ▶); Vo et al. (1995 ▶). For puckering analysis, see: Cremer & Pople (1975 ▶); Boeyens (1978 ▶). For graph-set analysis of hydrogen bonds, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶).

Experimental

Crystal data

C23H27N3O4 M = 409.48 Triclinic, a = 8.5905 (2) Å b = 10.8253 (3) Å c = 11.3702 (3) Å α = 91.021 (1)° β = 97.922 (1)° γ = 93.445 (1)° V = 1045.02 (5) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 200 K 0.36 × 0.31 × 0.16 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.969, T max = 0.986 18073 measured reflections 4983 independent reflections 4313 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.113 S = 1.05 4983 reflections 284 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2010 ▶); cell refinement: SAINT (Bruker, 2010 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 2012 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812044649/hg5264sup1.cif Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812044649/hg5264Isup2.cdx Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812044649/hg5264Isup3.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812044649/hg5264Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H27N3O4Z = 2
Mr = 409.48F(000) = 436
Triclinic, P1Dx = 1.301 Mg m3
Hall symbol: -P 1Melting point = 471–473 K
a = 8.5905 (2) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.8253 (3) ÅCell parameters from 9960 reflections
c = 11.3702 (3) Åθ = 2.7–28.3°
α = 91.021 (1)°µ = 0.09 mm1
β = 97.922 (1)°T = 200 K
γ = 93.445 (1)°Block, yellow
V = 1045.02 (5) Å30.36 × 0.31 × 0.16 mm
Bruker APEXII CCD diffractometer4983 independent reflections
Radiation source: fine-focus sealed tube4313 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.017
φ and ω scansθmax = 28.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −11→11
Tmin = 0.969, Tmax = 0.986k = −14→14
18073 measured reflectionsl = −15→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.113H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0515P)2 + 0.4147P] where P = (Fo2 + 2Fc2)/3
4983 reflections(Δ/σ)max < 0.001
284 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.21 e Å3
xyzUiso*/Ueq
O10.45908 (13)0.00208 (9)0.66938 (10)0.0463 (3)
O20.25873 (11)−0.00254 (8)0.52185 (9)0.0327 (2)
O30.15357 (10)0.44024 (9)0.88752 (8)0.0317 (2)
O40.37379 (10)0.34282 (9)0.94459 (8)0.0304 (2)
N110.25151 (12)0.37638 (9)0.53483 (9)0.0245 (2)
H11B0.2162 (19)0.4218 (15)0.4735 (15)0.034 (4)*
N210.76600 (12)0.46269 (10)0.68190 (10)0.0280 (2)
N220.82226 (12)0.39623 (9)0.77631 (9)0.0242 (2)
H220.923 (2)0.4087 (15)0.8088 (14)0.033 (4)*
C10.24030 (17)0.21083 (13)0.38718 (11)0.0343 (3)
H1A0.13190.17440.37640.051*
H1B0.31150.14840.36790.051*
H1C0.24780.28100.33450.051*
C20.15003 (15)0.53629 (12)0.64804 (12)0.0297 (3)
H2A0.17260.57590.72730.045*
H2B0.03630.51740.62820.045*
H2C0.18650.59240.58940.045*
C30.36694 (14)0.05624 (11)0.60280 (11)0.0266 (2)
C40.25461 (18)−0.13674 (12)0.51954 (14)0.0362 (3)
H4A0.2425−0.16890.59900.043*
H4B0.3530−0.16580.49570.043*
C50.11687 (18)−0.17966 (13)0.43120 (14)0.0403 (3)
H5A0.0216−0.14480.45280.060*
H5B0.1041−0.27020.43050.060*
H5C0.1342−0.15210.35210.060*
C60.26466 (13)0.38529 (11)0.86200 (11)0.0237 (2)
C70.35707 (17)0.36804 (16)1.06793 (12)0.0378 (3)
H7A0.25620.32961.08660.045*
H7B0.35890.45841.08370.045*
C80.49288 (19)0.31395 (17)1.14178 (13)0.0443 (4)
H8A0.49030.33401.22580.066*
H8B0.59180.34861.11840.066*
H8C0.48550.22381.12940.066*
C90.90941 (19)−0.02184 (15)1.18484 (14)0.0431 (4)
H9A0.89810.01371.26290.065*
H9B1.0204−0.03601.18170.065*
H9C0.8465−0.10071.17190.065*
C110.41373 (12)0.25920 (10)0.72388 (10)0.0203 (2)
H110.41530.19890.78950.024*
C120.35319 (13)0.19111 (11)0.60642 (10)0.0226 (2)
C130.28586 (14)0.25489 (11)0.51391 (11)0.0244 (2)
C140.23363 (13)0.41889 (11)0.64688 (11)0.0228 (2)
C150.29660 (13)0.35556 (10)0.74185 (10)0.0210 (2)
C210.57727 (13)0.32159 (10)0.72757 (10)0.0211 (2)
C220.61806 (14)0.41725 (12)0.65375 (11)0.0265 (3)
H22A0.54730.44650.59020.032*
C230.71422 (13)0.31013 (10)0.80674 (10)0.0214 (2)
C310.75666 (13)0.22762 (11)0.90584 (10)0.0231 (2)
C320.86603 (15)0.26894 (12)1.00279 (11)0.0282 (3)
H320.90840.35231.00740.034*
C330.91302 (16)0.18844 (13)1.09262 (12)0.0327 (3)
H330.98830.21771.15780.039*
C340.85291 (15)0.06632 (13)1.08966 (12)0.0321 (3)
C350.74117 (17)0.02728 (13)0.99461 (13)0.0357 (3)
H350.6959−0.05510.99210.043*
C360.69364 (15)0.10560 (12)0.90293 (12)0.0311 (3)
H360.61800.07600.83810.037*
U11U22U33U12U13U23
O10.0470 (6)0.0281 (5)0.0564 (7)0.0101 (4)−0.0218 (5)−0.0044 (5)
O20.0351 (5)0.0228 (4)0.0369 (5)0.0006 (4)−0.0064 (4)−0.0024 (4)
O30.0226 (4)0.0383 (5)0.0348 (5)0.0059 (4)0.0047 (4)−0.0034 (4)
O40.0269 (4)0.0430 (5)0.0215 (4)0.0090 (4)0.0015 (3)−0.0001 (4)
N110.0230 (5)0.0253 (5)0.0242 (5)0.0011 (4)−0.0010 (4)0.0067 (4)
N210.0209 (5)0.0310 (5)0.0316 (5)0.0012 (4)0.0004 (4)0.0109 (4)
N220.0178 (5)0.0265 (5)0.0273 (5)0.0015 (4)−0.0012 (4)0.0056 (4)
C10.0409 (7)0.0360 (7)0.0239 (6)−0.0007 (6)−0.0016 (5)0.0017 (5)
C20.0244 (6)0.0273 (6)0.0373 (7)0.0063 (5)0.0012 (5)0.0064 (5)
C30.0243 (6)0.0256 (6)0.0292 (6)0.0018 (4)0.0018 (5)−0.0019 (5)
C40.0398 (7)0.0222 (6)0.0439 (8)0.0016 (5)−0.0033 (6)−0.0025 (5)
C50.0424 (8)0.0287 (7)0.0462 (8)−0.0004 (6)−0.0042 (6)−0.0033 (6)
C60.0189 (5)0.0236 (5)0.0277 (6)−0.0015 (4)0.0016 (4)0.0002 (4)
C70.0341 (7)0.0567 (9)0.0229 (6)0.0055 (6)0.0049 (5)−0.0031 (6)
C80.0413 (8)0.0642 (10)0.0255 (7)0.0036 (7)−0.0025 (6)0.0007 (6)
C90.0408 (8)0.0478 (9)0.0400 (8)0.0045 (7)0.0001 (6)0.0213 (7)
C110.0176 (5)0.0212 (5)0.0216 (5)0.0016 (4)0.0004 (4)0.0029 (4)
C120.0199 (5)0.0229 (5)0.0245 (5)−0.0003 (4)0.0022 (4)0.0000 (4)
C130.0209 (5)0.0265 (6)0.0248 (6)−0.0025 (4)0.0013 (4)0.0012 (4)
C140.0158 (5)0.0230 (5)0.0287 (6)−0.0008 (4)0.0010 (4)0.0031 (4)
C150.0164 (5)0.0212 (5)0.0251 (5)0.0002 (4)0.0016 (4)0.0017 (4)
C210.0182 (5)0.0224 (5)0.0223 (5)0.0031 (4)0.0007 (4)0.0019 (4)
C220.0195 (5)0.0304 (6)0.0287 (6)0.0020 (4)−0.0006 (4)0.0089 (5)
C230.0188 (5)0.0221 (5)0.0229 (5)0.0031 (4)0.0012 (4)0.0009 (4)
C310.0195 (5)0.0258 (6)0.0239 (5)0.0046 (4)0.0011 (4)0.0033 (4)
C320.0265 (6)0.0293 (6)0.0272 (6)−0.0008 (5)−0.0008 (5)0.0033 (5)
C330.0287 (6)0.0409 (7)0.0262 (6)0.0007 (5)−0.0047 (5)0.0060 (5)
C340.0272 (6)0.0384 (7)0.0311 (6)0.0052 (5)0.0023 (5)0.0127 (5)
C350.0344 (7)0.0284 (6)0.0419 (8)−0.0012 (5)−0.0030 (6)0.0101 (6)
C360.0275 (6)0.0286 (6)0.0339 (7)0.0007 (5)−0.0070 (5)0.0045 (5)
O1—C31.2041 (16)C7—H7A0.9900
O2—C31.3373 (15)C7—H7B0.9900
O2—C41.4508 (15)C8—H8A0.9800
O3—C61.2195 (15)C8—H8B0.9800
O4—C61.3403 (14)C8—H8C0.9800
O4—C71.4521 (15)C9—C341.5050 (18)
N11—C141.3785 (16)C9—H9A0.9800
N11—C131.3886 (16)C9—H9B0.9800
N11—H11B0.890 (17)C9—H9C0.9800
N21—C221.3292 (15)C11—C211.5167 (15)
N21—N221.3527 (14)C11—C151.5223 (15)
N22—C231.3586 (15)C11—C121.5247 (15)
N22—H220.892 (17)C11—H111.0000
C1—C131.5015 (17)C12—C131.3505 (16)
C1—H1A0.9800C14—C151.3559 (16)
C1—H1B0.9800C21—C231.3926 (15)
C1—H1C0.9800C21—C221.4029 (16)
C2—C141.4977 (16)C22—H22A0.9500
C2—H2A0.9800C23—C311.4704 (15)
C2—H2B0.9800C31—C321.3945 (17)
C2—H2C0.9800C31—C361.3952 (17)
C3—C121.4720 (16)C32—C331.3877 (17)
C4—C51.488 (2)C32—H320.9500
C4—H4A0.9900C33—C341.388 (2)
C4—H4B0.9900C33—H330.9500
C5—H5A0.9800C34—C351.3845 (19)
C5—H5B0.9800C35—C361.3885 (18)
C5—H5C0.9800C35—H350.9500
C6—C151.4641 (16)C36—H360.9500
C7—C81.496 (2)
C3—O2—C4116.55 (10)C34—C9—H9A109.5
C6—O4—C7116.94 (10)C34—C9—H9B109.5
C14—N11—C13121.46 (10)H9A—C9—H9B109.5
C14—N11—H11B117.7 (10)C34—C9—H9C109.5
C13—N11—H11B119.0 (10)H9A—C9—H9C109.5
C22—N21—N22103.83 (9)H9B—C9—H9C109.5
N21—N22—C23112.96 (10)C21—C11—C15109.87 (9)
N21—N22—H22119.8 (10)C21—C11—C12113.53 (9)
C23—N22—H22127.1 (10)C15—C11—C12106.87 (9)
C13—C1—H1A109.5C21—C11—H11108.8
C13—C1—H1B109.5C15—C11—H11108.8
H1A—C1—H1B109.5C12—C11—H11108.8
C13—C1—H1C109.5C13—C12—C3123.65 (11)
H1A—C1—H1C109.5C13—C12—C11119.48 (10)
H1B—C1—H1C109.5C3—C12—C11116.82 (10)
C14—C2—H2A109.5C12—C13—N11118.14 (11)
C14—C2—H2B109.5C12—C13—C1128.04 (11)
H2A—C2—H2B109.5N11—C13—C1113.82 (11)
C14—C2—H2C109.5C15—C14—N11118.45 (10)
H2A—C2—H2C109.5C15—C14—C2127.45 (11)
H2B—C2—H2C109.5N11—C14—C2114.04 (10)
O1—C3—O2122.52 (11)C14—C15—C6121.38 (10)
O1—C3—C12124.48 (11)C14—C15—C11118.89 (10)
O2—C3—C12112.88 (10)C6—C15—C11119.52 (10)
O2—C4—C5106.23 (11)C23—C21—C22103.87 (10)
O2—C4—H4A110.5C23—C21—C11130.71 (10)
C5—C4—H4A110.5C22—C21—C11125.13 (10)
O2—C4—H4B110.5N21—C22—C21113.03 (10)
C5—C4—H4B110.5N21—C22—H22A123.5
H4A—C4—H4B108.7C21—C22—H22A123.5
C4—C5—H5A109.5N22—C23—C21106.30 (10)
C4—C5—H5B109.5N22—C23—C31120.22 (10)
H5A—C5—H5B109.5C21—C23—C31133.47 (11)
C4—C5—H5C109.5C32—C31—C36118.69 (11)
H5A—C5—H5C109.5C32—C31—C23120.25 (11)
H5B—C5—H5C109.5C36—C31—C23121.01 (11)
O3—C6—O4122.45 (11)C33—C32—C31120.06 (12)
O3—C6—C15126.12 (11)C33—C32—H32120.0
O4—C6—C15111.42 (10)C31—C32—H32120.0
O4—C7—C8106.79 (11)C32—C33—C34121.70 (12)
O4—C7—H7A110.4C32—C33—H33119.2
C8—C7—H7A110.4C34—C33—H33119.2
O4—C7—H7B110.4C35—C34—C33117.73 (12)
C8—C7—H7B110.4C35—C34—C9120.89 (13)
H7A—C7—H7B108.6C33—C34—C9121.37 (13)
C7—C8—H8A109.5C34—C35—C36121.64 (13)
C7—C8—H8B109.5C34—C35—H35119.2
H8A—C8—H8B109.5C36—C35—H35119.2
C7—C8—H8C109.5C35—C36—C31120.15 (12)
H8A—C8—H8C109.5C35—C36—H36119.9
H8B—C8—H8C109.5C31—C36—H36119.9
C22—N21—N22—C230.64 (14)C21—C11—C15—C1483.76 (12)
C4—O2—C3—O11.44 (19)C12—C11—C15—C14−39.82 (13)
C4—O2—C3—C12−174.64 (11)C21—C11—C15—C6−91.09 (12)
C3—O2—C4—C5174.86 (12)C12—C11—C15—C6145.33 (10)
C7—O4—C6—O3−1.67 (18)C15—C11—C21—C23116.11 (13)
C7—O4—C6—C15179.04 (11)C12—C11—C21—C23−124.30 (13)
C6—O4—C7—C8−179.02 (12)C15—C11—C21—C22−56.77 (15)
O1—C3—C12—C13159.81 (14)C12—C11—C21—C2262.82 (15)
O2—C3—C12—C13−24.20 (17)N22—N21—C22—C21−0.49 (14)
O1—C3—C12—C11−22.62 (18)C23—C21—C22—N210.18 (14)
O2—C3—C12—C11153.37 (10)C11—C21—C22—N21174.63 (11)
C21—C11—C12—C13−83.11 (13)N21—N22—C23—C21−0.54 (14)
C15—C11—C12—C1338.18 (14)N21—N22—C23—C31178.60 (10)
C21—C11—C12—C399.21 (12)C22—C21—C23—N220.21 (13)
C15—C11—C12—C3−139.50 (10)C11—C21—C23—N22−173.80 (11)
C3—C12—C13—N11167.37 (11)C22—C21—C23—C31−178.77 (12)
C11—C12—C13—N11−10.14 (16)C11—C21—C23—C317.2 (2)
C3—C12—C13—C1−12.1 (2)N22—C23—C31—C3232.05 (17)
C11—C12—C13—C1170.34 (11)C21—C23—C31—C32−149.08 (13)
C14—N11—C13—C12−22.13 (16)N22—C23—C31—C36−145.42 (12)
C14—N11—C13—C1157.45 (11)C21—C23—C31—C3633.4 (2)
C13—N11—C14—C1520.38 (16)C36—C31—C32—C331.51 (19)
C13—N11—C14—C2−162.15 (10)C23—C31—C32—C33−176.02 (11)
N11—C14—C15—C6−171.78 (10)C31—C32—C33—C34−0.5 (2)
C2—C14—C15—C611.14 (18)C32—C33—C34—C35−1.2 (2)
N11—C14—C15—C1113.47 (15)C32—C33—C34—C9177.43 (13)
C2—C14—C15—C11−163.61 (11)C33—C34—C35—C362.0 (2)
O3—C6—C15—C1421.00 (18)C9—C34—C35—C36−176.65 (14)
O4—C6—C15—C14−159.74 (11)C34—C35—C36—C31−1.1 (2)
O3—C6—C15—C11−164.28 (11)C32—C31—C36—C35−0.75 (19)
O4—C6—C15—C1114.98 (14)C23—C31—C36—C35176.77 (12)
D—H···AD—HH···AD···AD—H···A
N11—H11B···N21i0.890 (17)2.200 (17)3.0352 (14)156.2 (14)
N22—H22···O3ii0.892 (17)2.066 (17)2.9580 (13)178.6 (15)
C2—H2B···N21iii0.982.523.4223 (16)153
C36—H36···O10.952.303.2428 (17)173
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N11—H11B⋯N21i 0.890 (17)2.200 (17)3.0352 (14)156.2 (14)
N22—H22⋯O3ii 0.892 (17)2.066 (17)2.9580 (13)178.6 (15)
C2—H2B⋯N21iii 0.982.523.4223 (16)153
C36—H36⋯O10.952.303.2428 (17)173

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

3.  Hantzsch reaction: synthesis and characterization of some new 1,4-dihydropyridine derivatives as potent antimicrobial and antioxidant agents.

Authors:  A M Vijesh; Arun M Isloor; S K Peethambar; K N Shivananda; T Arulmoli; Nishitha A Isloor
Journal:  Eur J Med Chem       Date:  2011-09-22       Impact factor: 6.514

4.  Syntheses, calcium channel agonist-antagonist modulation activities, and voltage-clamp studies of isopropyl 1,4-dihydro-2,6-dimethyl-3-nitro-4-pyridinylpyridine-5-carboxylate racemates and enantiomers.

Authors:  D Vo; W C Matowe; M Ramesh; N Iqbal; M W Wolowyk; S E Howlett; E E Knaus
Journal:  J Med Chem       Date:  1995-07-21       Impact factor: 7.446

5.  Oxidation of 4-aryl- and 4-alkyl-substituted 2,6-dimethyl-3,5-bis(alkoxycarbonyl)-1,4-dihydropyridines by human liver microsomes and immunochemical evidence for the involvement of a form of cytochrome P-450.

Authors:  R H Böcker; F P Guengerich
Journal:  J Med Chem       Date:  1986-09       Impact factor: 7.446

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.