Literature DB >> 23468776

Tris(5-amino-1H-1,2,4-triazol-4-ium) dihydrogenphosphate hydrogen-phosphate trihydrate.

Mohamed Lahbib Mrad1, Matthias Zeller, Kristen J Hernandez, Mohamed Rzaigui, Cherif Ben Nasr.   

Abstract

In the crystal structure of the title molecular <span class="Chemical">saltn>, 3C2<span class="Species">H5N4(+)·<span class="Chemical">HPO4(2-)·H2PO4(-)·3H2O, the phosphate-based framework is built upon layers parallel to (010) made up from the H2PO4(-) and HPO4(2-) anions and water mol-ecules, which are inter-connected through O-H⋯O hydrogen bonds. The organic cations are located between the phosphate-water layers and are connected to them via N-H⋯O hydrogen bonds. The bond-length features are consistent with an imino resonance form for the exocyclic amino group, as is commonly found for a C-N single bond involving sp(2)-hybridized C and N atoms.

Entities:  

Year:  2012        PMID: 23468776      PMCID: PMC3588811          DOI: 10.1107/S1600536812044492

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of organic <span class="Chemical">phosphaten> complexes, see: Bringley & Rajeswaran (2006 ▶); Dai et al. (2002 ▶); Masse et al. (1993 ▶). For graph-set motifs and theory, see: Bernstein et al. (1995 ▶). For reference structural data, see: Kaabi et al. (2004 ▶); Shanmuga Sundara Raj et al. (2000 ▶). For P—OH bond lengths, see: Chtioui & Jouini (2005 ▶).

Experimental

Crystal data

3C2<span class="Species">H5n class="Chemical">N4 +·HO4P2−·<spn>an class="Chemical">H2O4P−·3H2O M = 502.31 Monoclinic, a = 10.4793 (13) Å b = 8.7655 (11) Å c = 11.4536 (14) Å β = 107.489 (2)° V = 1003.5 (2) Å3 Z = 2 Mo Kα radiation μ = 0.30 mm−1 T = 100 K 0.60 × 0.35 × 0.18 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2011 ▶) T min = 0.693, T max = 0.746 13833 measured reflections 6229 independent reflections 6132 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.023 wR(F 2) = 0.059 S = 1.04 6229 reflections 322 parameters 32 restraints <span class="Disease">H atomsn> treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.19 e Å−3 Absolute structure: Flack (1983 ▶), 2950 Friedel pairs Flack parameter: −0.02 (4) Data collection: APEX2 (Bruker, 2011 ▶); cell refinement: SAINT (Bruker, 2011 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXLE (Hübschle et al., 2011 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812044492/ru2044sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812044492/ru2044Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812044492/ru2044Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
3C2H5N4+·HO4P2·H2O4P·3H2OF(000) = 524
Mr = 502.31Dx = 1.662 Mg m3
Monoclinic, PcMo Kα radiation, λ = 0.71073 Å
Hall symbol: P -2ycCell parameters from 5573 reflections
a = 10.4793 (13) Åθ = 3.0–31.8°
b = 8.7655 (11) ŵ = 0.30 mm1
c = 11.4536 (14) ÅT = 100 K
β = 107.489 (2)°Block, colourless
V = 1003.5 (2) Å30.60 × 0.35 × 0.18 mm
Z = 2
Bruker SMART APEX CCD diffractometer6229 independent reflections
Radiation source: fine-focus sealed tube6132 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.016
ω scansθmax = 32.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2011)h = −14→15
Tmin = 0.693, Tmax = 0.746k = −12→13
13833 measured reflectionsl = −16→16
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.023H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.059w = 1/[σ2(Fo2) + (0.0385P)2 + 0.0562P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
6229 reflectionsΔρmax = 0.33 e Å3
322 parametersΔρmin = −0.19 e Å3
32 restraintsAbsolute structure: Flack (1983), 2950 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.02 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N1A0.62032 (11)0.15272 (11)0.77449 (9)0.01772 (18)
H1A10.6049 (17)0.2392 (16)0.7386 (16)0.021*
H1A20.6042 (17)0.1391 (19)0.8421 (13)0.021*
N2A0.60906 (10)0.04376 (11)0.58172 (9)0.01488 (17)
H2A0.61410.12930.54320.018*
N3A0.59896 (10)−0.09961 (11)0.52940 (9)0.01524 (17)
N4A0.60216 (9)−0.11435 (11)0.72352 (9)0.01336 (16)
H4A0.6017−0.15430.79390.016*
C1A0.61011 (10)0.03524 (12)0.69840 (10)0.01299 (18)
C2A0.59494 (11)−0.19168 (13)0.61746 (10)0.01451 (18)
H2AA0.5879−0.29950.60930.017*
N1B0.95278 (11)0.16763 (12)0.67577 (9)0.01933 (19)
H1B10.9835 (17)0.2502 (16)0.7144 (15)0.023*
H1B20.9369 (18)0.0936 (17)0.7129 (16)0.023*
N2B0.92010 (10)0.02876 (11)0.48939 (9)0.01598 (17)
H2B10.8958−0.05910.51320.019*
N3B0.93026 (11)0.05748 (11)0.37327 (10)0.01706 (18)
N4B0.98316 (9)0.26338 (10)0.49075 (8)0.01343 (16)
H4B1.00820.35740.51330.016*
C1B0.95240 (10)0.15303 (12)0.56033 (10)0.01362 (18)
C2B0.96750 (11)0.19962 (13)0.37803 (10)0.01543 (19)
H2B20.98210.25310.31100.019*
N1C0.28072 (10)0.15370 (11)0.42295 (9)0.01621 (17)
H1C10.2900 (16)0.137 (2)0.4966 (12)0.019*
H1C20.2796 (17)0.2424 (15)0.3916 (15)0.019*
N2C0.28411 (10)0.04801 (11)0.23314 (8)0.01377 (16)
H2C0.28430.13450.19420.017*
N3C0.28565 (10)−0.09510 (11)0.18257 (9)0.01465 (17)
N4C0.28158 (9)−0.11349 (11)0.37482 (8)0.01238 (16)
H4C0.2795−0.15470.44430.015*
C1C0.28234 (10)0.03715 (12)0.34900 (9)0.01169 (17)
C2C0.28461 (10)−0.18892 (12)0.27069 (10)0.01394 (18)
H2CA0.2858−0.29690.26360.017*
P1A0.23842 (2)0.41894 (3)0.11253 (2)0.00876 (5)
O1A0.09137 (7)0.45148 (9)0.04480 (7)0.01176 (13)
O2A0.31520 (8)0.55501 (9)0.07195 (7)0.01273 (14)
H2AB0.3902 (19)0.5380 (10)0.0918 (15)0.019*
O3A0.26391 (8)0.42577 (8)0.25172 (7)0.01225 (14)
O4A0.28676 (8)0.26682 (9)0.07706 (7)0.01314 (14)
P1B0.59788 (2)0.42266 (3)0.46934 (2)0.00962 (5)
O1B0.49521 (8)0.52280 (9)0.37270 (7)0.01584 (15)
H1B0.4300 (18)0.4769 (15)0.3450 (15)0.024*
O2B0.73507 (8)0.50517 (10)0.48323 (7)0.01466 (14)
H2BA0.7526 (10)0.5008 (18)0.4177 (17)0.022*
O3B0.57479 (8)0.43008 (9)0.59371 (7)0.01269 (14)
O4B0.59985 (9)0.26114 (9)0.42328 (7)0.01614 (15)
O10.78679 (8)0.52112 (11)0.77991 (8)0.01834 (16)
H1D0.8624 (15)0.502 (2)0.7733 (18)0.028*
H1E0.7308 (17)0.484 (2)0.7240 (15)0.028*
O21.04601 (8)0.44288 (10)0.79982 (7)0.01506 (15)
H2D1.0714 (18)0.4441 (19)0.8747 (12)0.023*
H2E1.1091 (15)0.481 (2)0.7840 (17)0.023*
O30.91292 (8)0.75025 (9)0.58426 (8)0.01633 (15)
H3D0.8480 (15)0.699 (2)0.5712 (17)0.025*
H3E0.9680 (16)0.6944 (19)0.5732 (17)0.025*
U11U22U33U12U13U23
N1A0.0286 (5)0.0117 (4)0.0144 (4)−0.0010 (4)0.0086 (4)−0.0005 (3)
N2A0.0231 (4)0.0110 (4)0.0115 (4)−0.0008 (3)0.0067 (3)0.0012 (3)
N3A0.0212 (4)0.0128 (4)0.0127 (4)−0.0002 (3)0.0067 (3)−0.0007 (3)
N4A0.0176 (4)0.0118 (4)0.0114 (4)0.0000 (3)0.0054 (3)0.0021 (3)
C1A0.0142 (4)0.0125 (5)0.0123 (5)−0.0003 (3)0.0041 (3)0.0017 (3)
C2A0.0177 (4)0.0134 (5)0.0134 (5)−0.0004 (4)0.0061 (4)0.0002 (3)
N1B0.0291 (5)0.0157 (4)0.0145 (4)−0.0063 (4)0.0085 (4)−0.0010 (3)
N2B0.0207 (4)0.0123 (4)0.0155 (4)−0.0025 (3)0.0063 (3)−0.0011 (3)
N3B0.0207 (4)0.0154 (4)0.0154 (4)−0.0004 (3)0.0058 (3)−0.0014 (3)
N4B0.0169 (4)0.0105 (4)0.0129 (4)−0.0015 (3)0.0045 (3)−0.0001 (3)
C1B0.0139 (4)0.0119 (4)0.0146 (5)−0.0004 (3)0.0037 (3)0.0000 (3)
C2B0.0172 (4)0.0154 (5)0.0139 (5)−0.0002 (4)0.0048 (4)−0.0006 (4)
N1C0.0248 (4)0.0124 (4)0.0129 (4)−0.0016 (3)0.0079 (3)−0.0013 (3)
N2C0.0222 (4)0.0099 (4)0.0106 (4)0.0010 (3)0.0070 (3)0.0005 (3)
N3C0.0225 (4)0.0101 (4)0.0123 (4)0.0017 (3)0.0066 (3)0.0002 (3)
N4C0.0167 (4)0.0104 (4)0.0109 (4)−0.0008 (3)0.0054 (3)0.0008 (3)
C1C0.0135 (4)0.0112 (5)0.0107 (4)−0.0004 (3)0.0040 (3)0.0008 (3)
C2C0.0186 (5)0.0113 (4)0.0126 (4)0.0005 (4)0.0056 (4)0.0006 (3)
P1A0.01123 (10)0.00815 (11)0.00727 (11)0.00019 (8)0.00335 (8)0.00021 (8)
O1A0.0118 (3)0.0126 (3)0.0107 (3)0.0004 (3)0.0031 (2)0.0007 (3)
O2A0.0126 (3)0.0103 (3)0.0161 (4)0.0001 (3)0.0057 (3)0.0030 (3)
O3A0.0152 (3)0.0137 (3)0.0078 (3)0.0001 (3)0.0034 (3)−0.0008 (2)
O4A0.0200 (3)0.0094 (3)0.0113 (3)0.0015 (3)0.0067 (3)−0.0003 (3)
P1B0.01187 (10)0.00900 (11)0.00812 (11)−0.00035 (8)0.00319 (8)−0.00054 (8)
O1B0.0154 (3)0.0138 (4)0.0150 (4)−0.0008 (3)−0.0006 (3)0.0036 (3)
O2B0.0131 (3)0.0193 (4)0.0127 (3)−0.0036 (3)0.0057 (3)−0.0023 (3)
O3B0.0136 (3)0.0160 (4)0.0095 (3)−0.0003 (3)0.0051 (3)−0.0022 (3)
O4B0.0291 (4)0.0099 (3)0.0115 (3)−0.0003 (3)0.0093 (3)−0.0011 (3)
O10.0131 (3)0.0292 (5)0.0127 (4)−0.0018 (3)0.0039 (3)−0.0045 (3)
O20.0152 (3)0.0208 (4)0.0099 (3)−0.0028 (3)0.0047 (3)−0.0007 (3)
O30.0162 (3)0.0120 (4)0.0225 (4)−0.0001 (3)0.0083 (3)−0.0010 (3)
N1A—C1A1.3325 (14)N2C—C1C1.3361 (13)
N1A—H1A10.854 (13)N2C—N3C1.3838 (13)
N1A—H1A20.849 (13)N2C—H2C0.8800
N2A—C1A1.3353 (14)N3C—C2C1.3044 (14)
N2A—N3A1.3826 (13)N4C—C1C1.3537 (14)
N2A—H2A0.8800N4C—C2C1.3724 (14)
N3A—C2A1.3022 (14)N4C—H4C0.8800
N4A—C1A1.3504 (15)C2C—H2CA0.9500
N4A—C2A1.3732 (14)P1A—O4A1.5243 (8)
N4A—H4A0.8800P1A—O1A1.5294 (8)
C2A—H2AA0.9500P1A—O3A1.5364 (8)
N1B—C1B1.3272 (15)P1A—O2A1.5845 (8)
N1B—H1B10.859 (13)O2A—H2AB0.7639
N1B—H1B20.820 (13)P1B—O4B1.5132 (8)
N2B—C1B1.3401 (14)P1B—O3B1.5163 (8)
N2B—N3B1.3888 (14)P1B—O1B1.5612 (8)
N2B—H2B10.8800P1B—O2B1.5741 (8)
N3B—C2B1.3018 (15)O1B—H1B0.7742
N4B—C1B1.3524 (14)O2B—H2BA0.8262
N4B—C2B1.3706 (14)O1—H1D0.835 (14)
N4B—H4B0.8800O1—H1E0.796 (14)
C2B—H2B20.9500O2—H2D0.819 (13)
N1C—C1C1.3304 (14)O2—H2E0.808 (13)
N1C—H1C10.833 (13)O3—H3D0.790 (13)
N1C—H1C20.855 (13)O3—H3E0.795 (13)
C1A—N1A—H1A1113.9 (12)C1C—N1C—H1C2115.6 (11)
C1A—N1A—H1A2119.3 (12)H1C1—N1C—H1C2124.9 (16)
H1A1—N1A—H1A2120.2 (17)C1C—N2C—N3C110.88 (9)
C1A—N2A—N3A111.07 (9)C1C—N2C—H2C124.6
C1A—N2A—H2A124.5N3C—N2C—H2C124.6
N3A—N2A—H2A124.5C2C—N3C—N2C104.11 (9)
C2A—N3A—N2A104.11 (9)C1C—N4C—C2C106.08 (9)
C1A—N4A—C2A106.34 (9)C1C—N4C—H4C127.0
C1A—N4A—H4A126.8C2C—N4C—H4C127.0
C2A—N4A—H4A126.8N1C—C1C—N2C125.74 (10)
N1A—C1A—N2A125.90 (10)N1C—C1C—N4C127.44 (10)
N1A—C1A—N4A127.52 (10)N2C—C1C—N4C106.81 (9)
N2A—C1A—N4A106.56 (9)N3C—C2C—N4C112.11 (10)
N3A—C2A—N4A111.92 (10)N3C—C2C—H2CA123.9
N3A—C2A—H2AA124.0N4C—C2C—H2CA123.9
N4A—C2A—H2AA124.0O4A—P1A—O1A113.13 (4)
C1B—N1B—H1B1118.9 (12)O4A—P1A—O3A110.03 (4)
C1B—N1B—H1B2120.0 (13)O1A—P1A—O3A110.70 (4)
H1B1—N1B—H1B2120.2 (18)O4A—P1A—O2A109.97 (5)
C1B—N2B—N3B110.80 (9)O1A—P1A—O2A103.52 (4)
C1B—N2B—H2B1124.6O3A—P1A—O2A109.26 (4)
N3B—N2B—H2B1124.6P1A—O2A—H2AB109.5
C2B—N3B—N2B103.98 (9)O4B—P1B—O3B112.98 (5)
C1B—N4B—C2B106.33 (9)O4B—P1B—O1B110.95 (5)
C1B—N4B—H4B126.8O3B—P1B—O1B111.80 (5)
C2B—N4B—H4B126.8O4B—P1B—O2B110.94 (5)
N1B—C1B—N2B127.37 (10)O3B—P1B—O2B106.50 (4)
N1B—C1B—N4B126.03 (10)O1B—P1B—O2B103.13 (5)
N2B—C1B—N4B106.60 (10)P1B—O1B—H1B109.5
N3B—C2B—N4B112.29 (10)P1B—O2B—H2BA109.5
N3B—C2B—H2B2123.9H1D—O1—H1E109.7 (19)
N4B—C2B—H2B2123.9H2D—O2—H2E101.5 (17)
C1C—N1C—H1C1119.1 (12)H3D—O3—H3E104.3 (18)
D—H···AD—HH···AD···AD—H···A
N1A—H1A1···O3B0.85 (1)2.31 (1)3.1356 (13)162 (2)
N1A—H1A2···N3Ai0.85 (1)2.19 (1)3.0305 (15)170 (2)
N2A—H2A···O4B0.881.772.6130 (13)161
N4A—H4A···O4Bi0.881.762.6314 (13)171
N1B—H1B1···O20.86 (1)1.96 (1)2.8214 (13)178 (2)
N1B—H1B2···N3Bi0.82 (1)2.28 (1)3.0639 (15)160 (2)
N2B—H2B1···O3ii0.881.842.6824 (13)159
N4B—H4B···O1Aiii0.881.872.7376 (12)167
N1C—H1C1···N3Ci0.83 (1)2.18 (1)3.0028 (14)172 (2)
N1C—H1C2···O3A0.86 (1)2.24 (1)3.0589 (13)160 (2)
N2C—H2C···O4A0.881.782.6278 (12)161
N4C—H4C···O4Ai0.881.792.6645 (12)170
O2A—H2AB···O3Biv0.761.952.6593 (11)155
O1B—H1B···O3A0.771.802.5495 (12)161
O2B—H2BA···O1iv0.831.732.5552 (12)176
O1—H1D···O20.84 (1)1.93 (1)2.7439 (12)166 (2)
O1—H1E···O3B0.80 (1)1.91 (1)2.6968 (12)168 (2)
O2—H2D···O1Av0.82 (1)1.90 (1)2.7024 (11)168 (2)
O2—H2E···O3Aiii0.81 (1)1.95 (1)2.7566 (12)178 (2)
O3—H3D···O2B0.79 (1)2.14 (2)2.8515 (12)149 (2)
O3—H3E···O1Aiii0.80 (1)1.92 (1)2.7085 (11)176 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1A—H1A1⋯O3B 0.85 (1)2.31 (1)3.1356 (13)162 (2)
N1A—H1A2⋯N3A i 0.85 (1)2.19 (1)3.0305 (15)170 (2)
N2A—H2A⋯O4B 0.881.772.6130 (13)161
N4A—H4A⋯O4B i 0.881.762.6314 (13)171
N1B—H1B1⋯O20.86 (1)1.96 (1)2.8214 (13)178 (2)
N1B—H1B2⋯N3B i 0.82 (1)2.28 (1)3.0639 (15)160 (2)
N2B—H2B1⋯O3ii 0.881.842.6824 (13)159
N4B—H4B⋯O1A iii 0.881.872.7376 (12)167
N1C—H1C1⋯N3C i 0.83 (1)2.18 (1)3.0028 (14)172 (2)
N1C—H1C2⋯O3A 0.86 (1)2.24 (1)3.0589 (13)160 (2)
N2C—H2C⋯O4A 0.881.782.6278 (12)161
N4C—H4C⋯O4A i 0.881.792.6645 (12)170
O2A—H2AB⋯O3B iv 0.761.952.6593 (11)155
O1B—H1B⋯O3A 0.771.802.5495 (12)161
O2B—H2BA⋯O1iv 0.831.732.5552 (12)176
O1—H1D⋯O20.84 (1)1.93 (1)2.7439 (12)166 (2)
O1—H1E⋯O3B 0.80 (1)1.91 (1)2.6968 (12)168 (2)
O2—H2D⋯O1A v 0.82 (1)1.90 (1)2.7024 (11)168 (2)
O2—H2E⋯O3A iii 0.81 (1)1.95 (1)2.7566 (12)178 (2)
O3—H3D⋯O2B 0.79 (1)2.14 (2)2.8515 (12)149 (2)
O3—H3E⋯O1A iii 0.80 (1)1.92 (1)2.7085 (11)176 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, structure, and fluorescence of the novel cadmium(II)-trimesate coordination polymers with different coordination architectures.

Authors:  Jing-Cao Dai; Xin-Tao Wu; Zhi-Yong Fu; Chuan-Peng Cui; Sheng-Min Hu; Wen-Xin Du; Li-Ming Wu; Han-Hui Zhang; Rui-Qing Sun
Journal:  Inorg Chem       Date:  2002-03-25       Impact factor: 5.165

3.  ShelXle: a Qt graphical user interface for SHELXL.

Authors:  Christian B Hübschle; George M Sheldrick; Birger Dittrich
Journal:  J Appl Crystallogr       Date:  2011-11-12       Impact factor: 3.304

  3 in total
  1 in total

1.  Crystal structure of bis-(2-amino-anilinium) hydrogen phosphate.

Authors:  Reena Ittyachan; Melesuparambil Sundaram Ahigna; Rajamony Jagan
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-03-22
  1 in total

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