Literature DB >> 23468774

N'-[(E)-2-Hy-droxy-5-meth-oxy-benzyl-idene]-2-meth-oxy-benzohydrazide.

M Syukri Baharudin1, Muhammad Taha, Nor Hadiani Ismail, Syed Adnan Ali Shah, Sammer Yousuf.   

Abstract

The mol-ecule of the title compound, C16H16N2O4, adopts an E conformation about the azomethine C=N double bond. The dihedral angle formed by the benzene rings is 18.88 (9)°. The mol-ecular conformation is stabilized by an intra-molecular O-H⋯N hydrogen bond, which forms an S(6) ring. In the crystal, the mol-ecules are linked into chains parallel to [001] by N-H⋯O hydrogen bonds. The chains are further connected into a three-dimensional network by π-π stacking inter-actions with centroid-centroid distances of 3.6538 (10) and 3.8995 (11) Å.

Entities:  

Year:  2012        PMID: 23468774      PMCID: PMC3588809          DOI: 10.1107/S1600536812042389

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the applications and biological activity of Schiff bases, see: Panneerselvam et al. (2009 ▶); Khan et al. (2009 ▶); Jarahpour et al. (2007 ▶); Pandeya et al. (1999 ▶). For related structures, see: Taha et al. (2012a ▶,b ▶); Lu et al. (2008 ▶).

Experimental

Crystal data

C16H16N2O4 M = 300.31 Monoclinic, a = 14.5775 (13) Å b = 11.0798 (11) Å c = 9.5893 (9) Å β = 99.872 (2)° V = 1525.9 (2) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 273 K 0.59 × 0.45 × 0.39 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.946, T max = 0.964 8886 measured reflections 2767 independent reflections 2210 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.124 S = 1.04 2767 reflections 208 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.15 e Å−3 Δρmin = −0.15 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812042389/rz5014sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812042389/rz5014Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812042389/rz5014Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H16N2O4F(000) = 632
Mr = 300.31Dx = 1.307 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3190 reflections
a = 14.5775 (13) Åθ = 2.3–25.0°
b = 11.0798 (11) ŵ = 0.10 mm1
c = 9.5893 (9) ÅT = 273 K
β = 99.872 (2)°Block, colourless
V = 1525.9 (2) Å30.59 × 0.45 × 0.39 mm
Z = 4
Bruker SMART APEX CCD area-detector diffractometer2767 independent reflections
Radiation source: fine-focus sealed tube2210 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.016
ω scanθmax = 25.5°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −17→16
Tmin = 0.946, Tmax = 0.964k = −13→13
8886 measured reflectionsl = −9→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.124H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0648P)2 + 0.1784P] where P = (Fo2 + 2Fc2)/3
2767 reflections(Δ/σ)max < 0.001
208 parametersΔρmax = 0.15 e Å3
0 restraintsΔρmin = −0.15 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.41411 (11)0.06306 (13)0.11043 (13)0.0918 (4)
O20.68838 (9)0.10138 (14)0.58074 (17)0.1009 (4)
O30.17476 (9)0.24072 (14)0.01591 (12)0.0957 (5)
O40.16599 (8)0.47356 (10)0.32496 (12)0.0767 (3)
N10.31001 (9)0.20202 (11)0.23724 (13)0.0618 (3)
N20.22889 (9)0.26092 (12)0.24670 (14)0.0634 (4)
C10.47885 (12)0.07530 (15)0.22962 (18)0.0714 (5)
C20.56411 (15)0.01986 (17)0.2354 (2)0.0881 (6)
H2B0.5758−0.02500.15840.106*
C30.63154 (14)0.03008 (17)0.3527 (2)0.0884 (6)
H3A0.6885−0.00830.35480.106*
C40.61614 (11)0.09696 (16)0.4685 (2)0.0752 (5)
C50.53108 (11)0.15170 (14)0.46503 (19)0.0692 (4)
H5A0.51980.19590.54280.083*
C60.46152 (10)0.14167 (13)0.34613 (16)0.0612 (4)
C70.37267 (11)0.19998 (13)0.34759 (17)0.0629 (4)
H7A0.36120.23640.43030.076*
C80.16545 (10)0.28010 (13)0.13077 (15)0.0585 (4)
C90.08121 (10)0.34987 (13)0.15057 (14)0.0578 (4)
C100.08163 (11)0.44261 (14)0.24890 (16)0.0631 (4)
C11−0.00098 (14)0.50192 (17)0.2600 (2)0.0822 (5)
H11A−0.00120.56260.32700.099*
C12−0.08169 (14)0.47113 (19)0.1728 (3)0.0922 (6)
H12A−0.13670.51060.18180.111*
C13−0.08304 (12)0.3835 (2)0.0728 (2)0.0883 (6)
H13A−0.13830.36410.01310.106*
C14−0.00128 (12)0.32362 (16)0.06098 (18)0.0743 (5)
H14A−0.00190.2648−0.00830.089*
C150.17013 (18)0.5590 (2)0.4353 (3)0.1167 (8)
H15A0.23390.57160.47830.175*
H15B0.13570.52950.50500.175*
H15C0.14370.63390.39740.175*
C160.67844 (15)0.1759 (2)0.6962 (3)0.1081 (7)
H16A0.73590.17750.76220.162*
H16B0.62990.14480.74210.162*
H16C0.66280.25630.66290.162*
H2A0.2202 (11)0.2826 (14)0.3268 (18)0.066 (5)*
H1A0.3662 (16)0.101 (2)0.120 (2)0.106 (7)*
U11U22U33U12U13U23
O10.1031 (10)0.1066 (10)0.0695 (8)0.0320 (8)0.0257 (7)−0.0085 (7)
O20.0627 (8)0.1096 (10)0.1274 (11)0.0180 (7)0.0077 (8)−0.0032 (9)
O30.1036 (10)0.1328 (11)0.0532 (7)0.0220 (8)0.0202 (6)−0.0145 (7)
O40.0744 (8)0.0750 (7)0.0801 (7)0.0077 (6)0.0118 (6)−0.0138 (6)
N10.0644 (8)0.0624 (7)0.0623 (8)0.0105 (6)0.0214 (7)0.0013 (6)
N20.0642 (8)0.0780 (8)0.0509 (7)0.0163 (6)0.0180 (6)−0.0018 (6)
C10.0783 (11)0.0701 (10)0.0719 (10)0.0150 (8)0.0298 (9)0.0068 (8)
C20.0933 (14)0.0870 (12)0.0924 (13)0.0288 (11)0.0400 (12)−0.0002 (10)
C30.0740 (12)0.0836 (12)0.1166 (16)0.0274 (10)0.0418 (12)0.0122 (11)
C40.0571 (10)0.0719 (10)0.0989 (12)0.0093 (8)0.0204 (9)0.0092 (9)
C50.0634 (10)0.0658 (9)0.0826 (11)0.0059 (7)0.0241 (9)−0.0007 (8)
C60.0608 (9)0.0569 (8)0.0708 (9)0.0071 (7)0.0247 (8)0.0039 (7)
C70.0648 (10)0.0622 (8)0.0654 (9)0.0073 (7)0.0211 (8)−0.0030 (7)
C80.0666 (9)0.0629 (8)0.0488 (8)−0.0017 (7)0.0180 (7)0.0036 (6)
C90.0581 (9)0.0632 (8)0.0539 (8)0.0000 (7)0.0142 (7)0.0152 (6)
C100.0643 (10)0.0622 (8)0.0654 (9)0.0052 (7)0.0183 (8)0.0104 (7)
C110.0774 (12)0.0749 (11)0.0991 (13)0.0142 (9)0.0293 (10)0.0068 (9)
C120.0663 (12)0.0863 (13)0.1271 (17)0.0149 (10)0.0258 (12)0.0237 (12)
C130.0587 (11)0.0930 (13)0.1090 (15)−0.0021 (9)0.0026 (10)0.0306 (12)
C140.0737 (11)0.0744 (10)0.0733 (10)−0.0056 (8)0.0082 (9)0.0145 (8)
C150.1156 (18)0.1105 (17)0.1212 (18)0.0065 (13)0.0127 (14)−0.0508 (14)
C160.0801 (14)0.1211 (18)0.1162 (17)0.0058 (12)−0.0030 (12)−0.0012 (15)
O1—C11.359 (2)C6—C71.450 (2)
O1—H1A0.84 (2)C7—H7A0.9300
O2—C41.372 (2)C8—C91.491 (2)
O2—C161.408 (3)C9—C141.384 (2)
O3—C81.2138 (17)C9—C101.394 (2)
O4—C101.362 (2)C10—C111.392 (2)
O4—C151.413 (2)C11—C121.365 (3)
N1—C71.2740 (18)C11—H11A0.9300
N1—N21.3671 (17)C12—C131.362 (3)
N2—C81.3356 (19)C12—H12A0.9300
N2—H2A0.835 (17)C13—C141.386 (3)
C1—C21.379 (2)C13—H13A0.9300
C1—C61.396 (2)C14—H14A0.9300
C2—C31.366 (3)C15—H15A0.9600
C2—H2B0.9300C15—H15B0.9600
C3—C41.385 (3)C15—H15C0.9600
C3—H3A0.9300C16—H16A0.9600
C4—C51.376 (2)C16—H16B0.9600
C5—C61.394 (2)C16—H16C0.9600
C5—H5A0.9300
C1—O1—H1A109.1 (15)C14—C9—C10118.52 (15)
C4—O2—C16117.98 (14)C14—C9—C8117.34 (14)
C10—O4—C15119.23 (15)C10—C9—C8124.08 (14)
C7—N1—N2117.29 (12)O4—C10—C11123.63 (16)
C8—N2—N1120.27 (12)O4—C10—C9116.54 (13)
C8—N2—H2A121.8 (11)C11—C10—C9119.75 (16)
N1—N2—H2A117.9 (11)C12—C11—C10120.09 (19)
O1—C1—C2118.72 (16)C12—C11—H11A120.0
O1—C1—C6122.06 (14)C10—C11—H11A120.0
C2—C1—C6119.22 (17)C13—C12—C11121.09 (18)
C3—C2—C1120.82 (17)C13—C12—H12A119.5
C3—C2—H2B119.6C11—C12—H12A119.5
C1—C2—H2B119.6C12—C13—C14119.35 (18)
C2—C3—C4120.80 (16)C12—C13—H13A120.3
C2—C3—H3A119.6C14—C13—H13A120.3
C4—C3—H3A119.6C9—C14—C13121.11 (18)
O2—C4—C5124.81 (17)C9—C14—H14A119.4
O2—C4—C3116.11 (16)C13—C14—H14A119.4
C5—C4—C3119.07 (18)O4—C15—H15A109.5
C4—C5—C6120.71 (16)O4—C15—H15B109.5
C4—C5—H5A119.6H15A—C15—H15B109.5
C6—C5—H5A119.6O4—C15—H15C109.5
C5—C6—C1119.36 (14)H15A—C15—H15C109.5
C5—C6—C7118.83 (14)H15B—C15—H15C109.5
C1—C6—C7121.80 (15)O2—C16—H16A109.5
N1—C7—C6120.96 (14)O2—C16—H16B109.5
N1—C7—H7A119.5H16A—C16—H16B109.5
C6—C7—H7A119.5O2—C16—H16C109.5
O3—C8—N2121.93 (14)H16A—C16—H16C109.5
O3—C8—C9121.66 (14)H16B—C16—H16C109.5
N2—C8—C9116.39 (12)
C7—N1—N2—C8171.24 (14)N1—N2—C8—O34.2 (2)
O1—C1—C2—C3179.69 (17)N1—N2—C8—C9−177.33 (12)
C6—C1—C2—C3−0.6 (3)O3—C8—C9—C1429.3 (2)
C1—C2—C3—C4−0.4 (3)N2—C8—C9—C14−149.17 (14)
C16—O2—C4—C5−6.0 (3)O3—C8—C9—C10−147.80 (16)
C16—O2—C4—C3175.16 (18)N2—C8—C9—C1033.75 (19)
C2—C3—C4—O2180.00 (17)C15—O4—C10—C119.0 (2)
C2—C3—C4—C51.1 (3)C15—O4—C10—C9−174.19 (17)
O2—C4—C5—C6−179.68 (15)C14—C9—C10—O4−173.55 (13)
C3—C4—C5—C6−0.9 (3)C8—C9—C10—O43.5 (2)
C4—C5—C6—C10.0 (2)C14—C9—C10—C113.4 (2)
C4—C5—C6—C7179.48 (14)C8—C9—C10—C11−179.56 (14)
O1—C1—C6—C5−179.50 (15)O4—C10—C11—C12175.27 (16)
C2—C1—C6—C50.8 (2)C9—C10—C11—C12−1.4 (3)
O1—C1—C6—C71.0 (2)C10—C11—C12—C13−0.8 (3)
C2—C1—C6—C7−178.75 (15)C11—C12—C13—C140.9 (3)
N2—N1—C7—C6−178.73 (13)C10—C9—C14—C13−3.3 (2)
C5—C6—C7—N1173.93 (14)C8—C9—C14—C13179.48 (14)
C1—C6—C7—N1−6.6 (2)C12—C13—C14—C91.1 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1A···N10.83 (2)1.87 (2)2.605 (2)146.0 (19)
N2—H2A···O3i0.835 (17)2.051 (17)2.8258 (17)154.2 (15)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1A⋯N10.83 (2)1.87 (2)2.605 (2)146.0 (19)
N2—H2A⋯O3i 0.835 (17)2.051 (17)2.8258 (17)154.2 (15)

Symmetry code: (i) .

  9 in total

1.  Synthesis, antibacterial, antifungal and anti-HIV activities of Schiff and Mannich bases derived from isatin derivatives and N-[4-(4'-chlorophenyl)thiazol-2-yl] thiosemicarbazide.

Authors:  S N Pandeya; D Sriram; G Nath; E DeClercq
Journal:  Eur J Pharm Sci       Date:  1999-10       Impact factor: 4.384

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  N'-(2-Hydroxy-benzyl-idene)-2-methoxy-benzohydrazide monohydrate.

Authors:  Jiu-Fu Lu; Suo-Tian Min; Xiao-Hui Ji; Zhong-Hai Dang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-06

4.  Synthesis, antibacterial, antifungal and antiviral activity evaluation of some new bis-Schiff bases of isatin and their derivatives.

Authors:  Aliasghar Jarrahpour; Dariush Khalili; Erik De Clercq; Chanaz Salmi; Jean Michel Brunel
Journal:  Molecules       Date:  2007-08-07       Impact factor: 4.411

5.  Schiff bases of 3-formylchromone as thymidine phosphorylase inhibitors.

Authors:  Khalid Mohammed Khan; Nida Ambreen; Sajjad Hussain; Shahnaz Perveen; M Iqbal Choudhary
Journal:  Bioorg Med Chem       Date:  2009-03-14       Impact factor: 3.641

6.  Synthesis and anti-microbial screening of some Schiff bases of 3-amino-6,8-dibromo-2-phenylquinazolin-4(3H)-ones.

Authors:  Perumal Panneerselvam; Bilal Ahmad Rather; Dontireddy Ravi Sankar Reddy; Natesh Ramesh Kumar
Journal:  Eur J Med Chem       Date:  2008-04-29       Impact factor: 6.514

7.  (E)-N'-(3,4-Dimeth-oxy-benzyl-idene)-4-meth-oxy-benzohydrazide.

Authors:  Muhammad Taha; Humera Naz; Aqilah Abd Rahman; Nor Hadiani Ismail; Yousuf Sammer
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-25

8.  N'-[(E)-2,3-Dihy-droxy-benzyl-idene]-2-meth-oxy-benzohydrazide.

Authors:  Muhammad Taha; M Syukri Baharudin; Nor Hadiani Ismail; Syed Adnan Ali Shah; Sammer Yousuf
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-03

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  9 in total
  3 in total

1.  Synthesis, evaluation of antioxidant activity and crystal structure of 2,4-dimethylbenzoylhydrazones.

Authors:  Muhammad Taha; Nor Hadiani Ismail; Waqas Jamil; Sammer Yousuf; Faridahanim Mohd Jaafar; Muhammad Imran Ali; Syed Muhammad Kashif; Ejaz Hussain
Journal:  Molecules       Date:  2013-09-05       Impact factor: 4.411

2.  N'-[(E)-2,3-Dihy-droxy-benzyl-idene]-2-meth-oxy-benzohydrazide.

Authors:  Muhammad Taha; M Syukri Baharudin; Nor Hadiani Ismail; Syed Adnan Ali Shah; Sammer Yousuf
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-03

3.  (E)-N'-(3,4-Dihy-droxy-benzyl-idene)-2,4-dimethyl-benzohydrazide monohydrate.

Authors:  Muhammad Taha; Nor Hadiani Ismail; Faridahanim Mohd Jaafar; Ahmad Nazif Aziz; Sammer Yousuf
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-06
  3 in total

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