Literature DB >> 23468748

(Nitrato-κ(2) O,O')bis-[(E)-N-(pyridin-4-yl-methyl-idene-κN)hy-droxy-amine]-silver(I).

Shan Gao1, Seik Weng Ng.   

Abstract

In the mononuclear title compound, [Ag(NO3)(C6H6N2O)2], the Ag(I) atom is located on a twofold rotation axis and the nitrate-chelated Ag(I) atom is further coordinated by two aromatic N atoms of hydroxyl-amine ligands in a distorted tetra-hedral geometry. In the crystal, the nitrate ion has 2 symmetry with the N atom and one O atom located on the twofold rotation axis, and is linked to hy-droxy groups of the hydroxyl-amine ligands by O-H⋯O hydrogen bonds, generating a chain running along the b axis.

Entities:  

Year:  2012        PMID: 23468748      PMCID: PMC3588783          DOI: 10.1107/S1600536812046107

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For (nitrato)(picolinaldehyde oxime)silver(I), see: Abu-Youssef et al. (2010 ▶).

Experimental

Crystal data

[Ag(NO3)(C6H6N2O)2] M = 414.14 Orthorhombic, a = 18.027 (3) Å b = 4.6907 (6) Å c = 17.7020 (19) Å V = 1496.9 (3) Å3 Z = 4 Mo Kα radiation μ = 1.38 mm−1 T = 293 K 0.20 × 0.12 × 0.12 mm

Data collection

Rigaku R-AXIS RAPID IP diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.770, T max = 0.852 13223 measured reflections 1705 independent reflections 1038 reflections with I > 2σ(I) R int = 0.082

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.162 S = 1.13 1705 reflections 108 parameters H-atom parameters constrained Δρmax = 0.92 e Å−3 Δρmin = −0.67 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalClear (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812046107/xu5647sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812046107/xu5647Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ag(NO3)(C6H6N2O)2]F(000) = 824
Mr = 414.14Dx = 1.838 Mg m3
Orthorhombic, PccnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ab 2acCell parameters from 4605 reflections
a = 18.027 (3) Åθ = 3.2–27.5°
b = 4.6907 (6) ŵ = 1.38 mm1
c = 17.7020 (19) ÅT = 293 K
V = 1496.9 (3) Å3Prism, colorless
Z = 40.20 × 0.12 × 0.12 mm
Rigaku R-AXIS RAPID IP diffractometer1705 independent reflections
Radiation source: fine-focus sealed tube1038 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.082
ω scanθmax = 27.5°, θmin = 3.2°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −23→23
Tmin = 0.770, Tmax = 0.852k = −5→6
13223 measured reflectionsl = −21→22
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.050H-atom parameters constrained
wR(F2) = 0.162w = 1/[σ2(Fo2) + (0.073P)2 + 1.2436P] where P = (Fo2 + 2Fc2)/3
S = 1.13(Δ/σ)max = 0.001
1705 reflectionsΔρmax = 0.92 e Å3
108 parametersΔρmin = −0.67 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0096 (16)
xyzUiso*/Ueq
Ag10.25000.25000.18639 (3)0.0532 (4)
O10.5757 (2)1.5200 (8)0.0886 (2)0.0584 (11)
H10.61431.55750.11320.088*
O20.3058 (3)0.1732 (13)0.3234 (2)0.0789 (15)
O30.25000.25000.4306 (3)0.093 (3)
N10.3325 (2)0.5683 (9)0.1548 (2)0.0454 (11)
N20.5350 (3)1.3109 (9)0.1264 (2)0.0487 (11)
N30.25000.25000.3606 (4)0.067 (2)
C10.3371 (3)0.6602 (14)0.0824 (3)0.0487 (13)
H1A0.30670.57520.04640.058*
C20.3841 (3)0.8714 (12)0.0598 (2)0.0426 (12)
H20.38400.93180.00980.051*
C30.4321 (2)0.9961 (10)0.1113 (3)0.0397 (11)
C40.4286 (3)0.9016 (12)0.1858 (3)0.0466 (13)
H40.46010.97820.22220.056*
C50.3783 (3)0.6940 (12)0.2050 (3)0.0454 (13)
H50.37560.63710.25520.055*
C60.4830 (3)1.2177 (11)0.0848 (3)0.0459 (13)
H60.47711.29190.03650.055*
U11U22U33U12U13U23
Ag10.0461 (5)0.0541 (5)0.0594 (5)−0.0093 (3)0.0000.000
O10.051 (2)0.064 (3)0.060 (2)−0.022 (2)−0.0052 (18)0.007 (2)
O20.054 (3)0.124 (4)0.059 (3)0.037 (3)0.006 (2)0.002 (2)
O30.084 (6)0.155 (10)0.040 (3)0.050 (5)0.0000.000
N10.038 (2)0.047 (3)0.051 (2)−0.007 (2)0.0030 (19)−0.003 (2)
N20.049 (3)0.050 (3)0.046 (2)−0.009 (2)0.003 (2)0.0004 (19)
N30.057 (5)0.084 (6)0.061 (5)0.020 (4)0.0000.000
C10.040 (3)0.061 (3)0.045 (3)0.002 (3)−0.002 (2)−0.005 (3)
C20.039 (3)0.050 (3)0.039 (3)0.000 (3)0.000 (2)0.003 (2)
C30.034 (2)0.040 (3)0.045 (3)0.002 (2)0.003 (2)0.001 (2)
C40.047 (3)0.045 (3)0.047 (3)−0.004 (3)−0.004 (2)0.000 (2)
C50.043 (3)0.053 (3)0.041 (3)−0.009 (2)−0.001 (2)−0.002 (2)
C60.046 (3)0.051 (3)0.041 (2)0.002 (2)−0.005 (2)0.000 (2)
Ag1—N1i2.180 (4)N3—O2i1.256 (6)
Ag1—N12.180 (4)C1—C21.364 (9)
Ag1—O22.651 (4)C1—H1A0.9300
Ag1—O2i2.651 (4)C2—C31.386 (7)
O1—N21.396 (5)C2—H20.9300
O1—H10.8400C3—C41.393 (6)
O2—N31.256 (6)C3—C61.463 (7)
O3—N31.239 (9)C4—C51.374 (8)
N1—C51.349 (6)C4—H40.9300
N1—C11.354 (6)C5—H50.9300
N2—C61.270 (7)C6—H60.9300
N1i—Ag1—N1150.3 (2)C2—C1—H1A118.4
N1i—Ag1—O2113.62 (18)C1—C2—C3120.1 (4)
N1—Ag1—O293.94 (18)C1—C2—H2119.9
N1i—Ag1—O2i93.94 (18)C3—C2—H2119.9
N1—Ag1—O2i113.62 (18)C2—C3—C4117.4 (4)
O2—Ag1—O2i47.57 (19)C2—C3—C6118.7 (4)
N2—O1—H1109.5C4—C3—C6123.9 (4)
N3—O2—Ag197.9 (4)C5—C4—C3119.3 (5)
C5—N1—C1116.5 (5)C5—C4—H4120.3
C5—N1—Ag1123.2 (3)C3—C4—H4120.3
C1—N1—Ag1120.2 (3)N1—C5—C4123.5 (5)
C6—N2—O1110.6 (4)N1—C5—H5118.3
O3—N3—O2i121.6 (4)C4—C5—H5118.3
O3—N3—O2121.6 (4)N2—C6—C3121.4 (5)
O2i—N3—O2116.7 (7)N2—C6—H6119.3
N1—C1—C2123.2 (5)C3—C6—H6119.3
N1—C1—H1A118.4
N1i—Ag1—O2—N3−72.7 (4)Ag1—N1—C1—C2175.7 (4)
N1—Ag1—O2—N3118.8 (3)N1—C1—C2—C32.3 (9)
O2i—Ag1—O2—N30.000 (1)C1—C2—C3—C4−1.5 (8)
N1i—Ag1—N1—C5−171.4 (4)C1—C2—C3—C6178.7 (5)
O2—Ag1—N1—C5−12.8 (4)C2—C3—C4—C5−0.5 (8)
O2i—Ag1—N1—C532.1 (5)C6—C3—C4—C5179.4 (5)
N1i—Ag1—N1—C112.1 (4)C1—N1—C5—C4−1.1 (8)
O2—Ag1—N1—C1170.6 (4)Ag1—N1—C5—C4−177.7 (4)
O2i—Ag1—N1—C1−144.4 (4)C3—C4—C5—N11.8 (9)
Ag1—O2—N3—O3180.0O1—N2—C6—C3179.9 (4)
Ag1—O2—N3—O2i0.000 (1)C2—C3—C6—N2−170.0 (5)
C5—N1—C1—C2−1.0 (8)C4—C3—C6—N210.2 (8)
D—H···AD—HH···AD···AD—H···A
O1—H1···O2ii0.841.902.740 (6)173
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯O2i 0.841.902.740 (6)173

Symmetry code: (i) .

  2 in total

1.  Synthesis, crystal structure, quantum chemical calculations, DNA interactions, and antimicrobial activity of [Ag(2-amino-3-methylpyridine)(2)]NO(3) and [Ag(pyridine-2-carboxaldoxime)NO(3)].

Authors:  Morsy A M Abu-Youssef; Saied M Soliman; Vratislav Langer; Yousry M Gohar; Ahmed A Hasanen; Mohamed A Makhyoun; Amira H Zaky; Lars R Öhrström
Journal:  Inorg Chem       Date:  2010-11-01       Impact factor: 5.165

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total
  1 in total

1.  Poly[[[μ3-(E)-N-(pyridin-4-yl-methyl-idene)hy-droxy-laminato-κ(3) O:N:N'][μ2-(E)-N-(pyridin-4-yl-methyl-idene)hydroxyl-amine-κ(2) N:N'][(E)-N-(pyridin-4-yl-methyl-idene-κN)hydroxyl-amine]-disilver(I)] nitrate].

Authors:  Shan Gao; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-28
  1 in total

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