Literature DB >> 23468715

Dipyridinium diaqua-bis-(pyrazole-3,5-di-carboxyl-ato-κ(2) N,O)cuprate(II) dihydrate.

Youtao Si1.   

Abstract

In the mononuclear title salt, (C5H6N)2[Cu(C5H2N2O4)2(H2O)2]·2H2O, the Cu(II) ion is located on an inversion centre and is coordinated by two chelating pyrazole-3,5-dicarboxyl-ate anions and two water mol-ecules, forming a Jahn-Teller-distorted CuN2O4 octa-hedron. O-H⋯O and N-H⋯O hydrogen bonds are formed between water mol-ecules, complex anions and the pyridine counter-cations, leading to the formation of layers parallel to (100). The layers are held together by weak C-H⋯O hydrogen bonds.

Entities:  

Year:  2012        PMID: 23468715      PMCID: PMC3588750          DOI: 10.1107/S1600536812046508

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For more information on ligands derived from pyrazole-3,5-dicarb­oxy­lic acid, see: King et al. (2004 ▶). For the bond-valence method, see: Brown (2002 ▶).

Experimental

Crystal data

(C5H6N)2[Cu(C5H2N2O4)2(H2O)2]·2H2O M = 603.99 Monoclinic, a = 9.3531 (4) Å b = 7.3521 (1) Å c = 17.9903 (7) Å β = 95.600 (2)° V = 1231.20 (7) Å3 Z = 2 Mo Kα radiation μ = 0.96 mm−1 T = 273 K 0.34 × 0.18 × 0.06 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.735, T max = 0.944 3386 measured reflections 2106 independent reflections 1802 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.075 wR(F 2) = 0.154 S = 1.26 2106 reflections 193 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.50 e Å−3 Δρmin = −0.41 e Å−3 Data collection: SMART (Siemens, 1998 ▶); cell refinement: SAINT (Siemens, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: WinGX (Farrugia, 2012 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812046508/wm2698sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812046508/wm2698Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812046508/wm2698Isup4.cdx Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C5H6N)2[Cu(C5H2N2O4)2(H2O)2]·2H2OF(000) = 622
Mr = 603.99Dx = 1.629 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1917 reflections
a = 9.3531 (4) Åθ = 2.2–25.0°
b = 7.3521 (1) ŵ = 0.96 mm1
c = 17.9903 (7) ÅT = 273 K
β = 95.600 (2)°Prism, blue
V = 1231.20 (7) Å30.34 × 0.18 × 0.06 mm
Z = 2
Bruker SMART CCD diffractometer2106 independent reflections
Radiation source: fine-focus sealed tube1802 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.038
phi and ω scansθmax = 25.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −11→9
Tmin = 0.735, Tmax = 0.944k = −8→7
3386 measured reflectionsl = −21→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.075Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.154H atoms treated by a mixture of independent and constrained refinement
S = 1.26w = 1/[σ2(Fo2) + (0.0117P)2 + 6.7689P] where P = (Fo2 + 2Fc2)/3
2106 reflections(Δ/σ)max < 0.001
193 parametersΔρmax = 0.50 e Å3
5 restraintsΔρmin = −0.41 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.50000.50000.50000.0307 (3)
O10.3159 (5)1.0520 (5)0.7574 (2)0.0340 (10)
O30.7070 (4)0.9725 (6)0.5173 (2)0.0334 (10)
N10.3911 (5)0.6681 (6)0.6461 (2)0.0253 (11)
H10.33670.58260.65990.030*
O40.6331 (4)0.6957 (5)0.4799 (2)0.0303 (10)
N20.4725 (5)0.6559 (6)0.5890 (2)0.0250 (10)
C20.4060 (6)0.8331 (8)0.6791 (3)0.0238 (12)
O20.2622 (5)0.7604 (6)0.7754 (2)0.0405 (11)
C10.3205 (6)0.8838 (8)0.7425 (3)0.0265 (13)
C40.5402 (6)0.8162 (7)0.5856 (3)0.0220 (12)
O50.2915 (6)0.6726 (6)0.4319 (3)0.0425 (11)
H3A0.290 (8)0.779 (4)0.444 (4)0.051*
H3B0.287 (8)0.679 (10)0.3864 (12)0.051*
C50.6349 (6)0.8345 (7)0.5240 (3)0.0221 (12)
C30.5020 (6)0.9310 (8)0.6420 (3)0.0270 (13)
H20.53451.04870.65230.032*
O60.7456 (6)0.6665 (6)0.3457 (3)0.0482 (13)
H4A0.719 (8)0.703 (10)0.385 (2)0.058*
H4B0.709 (8)0.739 (9)0.315 (3)0.058*
N31.1229 (6)0.2882 (8)0.3354 (3)0.0381 (13)
H51.185 (6)0.350 (8)0.313 (3)0.046*
C91.0145 (7)0.0054 (11)0.3514 (4)0.0479 (17)
H91.0028−0.11660.33850.057*
C101.1080 (7)0.1140 (9)0.3174 (4)0.0408 (16)
H101.16150.06490.28140.049*
C70.9545 (8)0.2621 (13)0.4227 (4)0.056 (2)
H70.90160.31440.45830.067*
C80.9389 (7)0.0817 (11)0.4047 (4)0.0496 (19)
H80.87600.01020.42910.059*
C61.0501 (8)0.3639 (11)0.3870 (4)0.0512 (19)
H61.06370.48620.39890.061*
U11U22U33U12U13U23
Cu10.0437 (6)0.0249 (5)0.0268 (5)−0.0106 (5)0.0198 (4)−0.0103 (5)
O10.042 (3)0.029 (2)0.033 (2)0.0026 (19)0.018 (2)−0.0069 (18)
O30.038 (2)0.031 (2)0.034 (2)−0.009 (2)0.0175 (19)−0.0081 (19)
N10.030 (3)0.024 (2)0.024 (2)−0.001 (2)0.013 (2)−0.002 (2)
O40.040 (2)0.027 (2)0.027 (2)−0.0115 (18)0.0212 (19)−0.0082 (17)
N20.031 (3)0.024 (2)0.021 (2)−0.001 (2)0.012 (2)−0.001 (2)
C20.027 (3)0.027 (3)0.018 (3)0.002 (2)0.004 (2)−0.003 (2)
O20.059 (3)0.034 (2)0.032 (2)−0.004 (2)0.024 (2)0.002 (2)
C10.027 (3)0.034 (3)0.020 (3)0.008 (3)0.004 (2)−0.007 (3)
C40.026 (3)0.021 (3)0.019 (3)−0.004 (2)0.004 (2)−0.005 (2)
O50.068 (3)0.030 (2)0.030 (2)−0.004 (2)0.006 (2)−0.002 (2)
C50.021 (3)0.025 (3)0.021 (3)−0.001 (2)0.003 (2)−0.001 (2)
C30.028 (3)0.025 (3)0.029 (3)−0.004 (2)0.009 (3)−0.004 (2)
O60.078 (4)0.030 (3)0.042 (3)−0.004 (2)0.037 (3)−0.005 (2)
N30.037 (3)0.046 (3)0.033 (3)−0.009 (3)0.012 (2)0.009 (3)
C90.045 (4)0.049 (4)0.050 (4)−0.009 (4)0.002 (3)0.012 (4)
C100.042 (4)0.046 (4)0.035 (4)0.000 (3)0.008 (3)0.001 (3)
C70.039 (4)0.092 (6)0.040 (4)−0.002 (4)0.019 (3)−0.016 (4)
C80.037 (4)0.076 (5)0.035 (4)−0.020 (4)0.000 (3)0.018 (4)
C60.051 (4)0.051 (4)0.054 (4)−0.006 (4)0.018 (4)−0.013 (4)
Cu1—O41.959 (4)O5—H3A0.82 (2)
Cu1—O4i1.959 (4)O5—H3B0.82 (2)
Cu1—N22.006 (4)C3—H20.9300
Cu1—N2i2.006 (4)O6—H4A0.82 (2)
Cu1—O52.539 (5)O6—H4B0.82 (2)
Cu1—O5i2.539 (5)N3—C101.325 (9)
O1—C11.267 (7)N3—C61.325 (8)
O3—C51.230 (6)N3—H50.87 (2)
N1—N21.341 (6)C9—C81.367 (10)
N1—C21.351 (7)C9—C101.371 (9)
N1—H10.8600C9—H90.9300
O4—C51.292 (6)C10—H100.9300
N2—C41.342 (7)C7—C81.369 (11)
C2—C31.374 (8)C7—C61.373 (10)
C2—C11.502 (7)C7—H70.9300
O2—C11.239 (7)C8—H80.9300
C4—C31.393 (7)C6—H60.9300
C4—C51.491 (7)
O4—Cu1—O4i179.999 (1)H3A—O5—H3B102 (7)
O4—Cu1—N281.99 (16)O3—C5—O4124.5 (5)
O4i—Cu1—N298.01 (16)O3—C5—C4121.2 (5)
O4—Cu1—N2i98.01 (16)O4—C5—C4114.3 (5)
O4i—Cu1—N2i81.99 (16)C2—C3—C4105.2 (5)
N2—Cu1—N2i179.999 (1)C2—C3—H2127.4
O4—Cu1—O590.92 (17)C4—C3—H2127.4
O4i—Cu1—O589.08 (17)H4A—O6—H4B103 (7)
N2—Cu1—O586.97 (17)C10—N3—C6121.9 (6)
N2i—Cu1—O593.03 (17)C10—N3—H5117 (5)
N2—N1—C2110.8 (4)C6—N3—H5121 (5)
N2—N1—H1124.6C8—C9—C10118.0 (7)
C2—N1—H1124.6C8—C9—H9121.0
C5—O4—Cu1116.0 (3)C10—C9—H9121.0
N1—N2—C4106.3 (4)N3—C10—C9120.7 (7)
N1—N2—Cu1141.0 (4)N3—C10—H10119.6
C4—N2—Cu1111.6 (3)C9—C10—H10119.6
N1—C2—C3107.6 (5)C8—C7—C6118.5 (7)
N1—C2—C1121.1 (5)C8—C7—H7120.8
C3—C2—C1131.3 (5)C6—C7—H7120.8
O2—C1—O1126.0 (5)C9—C8—C7120.8 (7)
O2—C1—C2118.2 (5)C9—C8—H8119.6
O1—C1—C2115.8 (5)C7—C8—H8119.6
N2—C4—C3110.1 (5)N3—C6—C7120.1 (7)
N2—C4—C5115.5 (4)N3—C6—H6120.0
C3—C4—C5134.4 (5)C7—C6—H6120.0
N2—Cu1—O4—C5−5.9 (4)Cu1—N2—C4—C5−7.8 (6)
N2i—Cu1—O4—C5174.1 (4)Cu1—O4—C5—O3−176.5 (4)
C2—N1—N2—C4−0.1 (6)Cu1—O4—C5—C43.3 (6)
C2—N1—N2—Cu1−166.3 (5)N2—C4—C5—O3−176.9 (5)
O4—Cu1—N2—N1173.2 (6)C3—C4—C5—O34.2 (10)
O4i—Cu1—N2—N1−6.8 (6)N2—C4—C5—O43.3 (7)
O4—Cu1—N2—C47.4 (4)C3—C4—C5—O4−175.6 (6)
O4i—Cu1—N2—C4−172.6 (4)N1—C2—C3—C40.8 (6)
N2—N1—C2—C3−0.5 (6)C1—C2—C3—C4−176.5 (6)
N2—N1—C2—C1177.2 (5)N2—C4—C3—C2−0.9 (7)
N1—C2—C1—O216.6 (8)C5—C4—C3—C2178.0 (6)
C3—C2—C1—O2−166.4 (6)C6—N3—C10—C90.7 (11)
N1—C2—C1—O1−163.7 (5)C8—C9—C10—N3−0.8 (10)
C3—C2—C1—O113.3 (9)C10—C9—C8—C71.1 (11)
N1—N2—C4—C30.6 (6)C6—C7—C8—C9−1.3 (11)
Cu1—N2—C4—C3171.3 (4)C10—N3—C6—C7−0.9 (11)
N1—N2—C4—C5−178.5 (5)C8—C7—C6—N31.1 (12)
D—H···AD—HH···AD···AD—H···A
N1—H1···O6i0.861.992.783 (6)154
O5—H3A···O3ii0.81 (4)1.95 (4)2.764 (6)175 (8)
O5—H3B···O2iii0.82 (2)2.04 (3)2.845 (6)170 (7)
O6—H4A···O40.82 (5)1.96 (5)2.735 (7)159 (7)
O6—H4B···O1ii0.82 (6)2.01 (6)2.801 (6)162 (7)
N3—H5···O1iv0.87 (6)1.81 (6)2.665 (7)171 (6)
C6—H6···O5v0.932.553.247 (9)132
C8—H8···O3vi0.932.363.211 (8)151
C10—H10···O2vii0.932.583.231 (8)128
Cu1—O41.959 (4)
Cu1—N22.006 (4)
Cu1—O52.539 (5)
O4—Cu1—N281.99 (16)
O4—Cu1—O590.92 (17)
N2—Cu1—O586.97 (17)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O6i 0.861.992.783 (6)154
O5—H3A⋯O3ii 0.81 (4)1.95 (4)2.764 (6)175 (8)
O5—H3B⋯O2iii 0.82 (2)2.04 (3)2.845 (6)170 (7)
O6—H4A⋯O40.82 (5)1.96 (5)2.735 (7)159 (7)
O6—H4B⋯O1ii 0.82 (6)2.01 (6)2.801 (6)162 (7)
N3—H5⋯O1iv 0.87 (6)1.81 (6)2.665 (7)171 (6)
C6—H6⋯O5v 0.932.553.247 (9)132
C8—H8⋯O3vi 0.932.363.211 (8)151
C10—H10⋯O2vii 0.932.583.231 (8)128

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  The building block approach to extended solids: 3,5-pyrazoledicarboxylate coordination compounds of increasing dimensionality.

Authors:  Philippa King; Rodolphe Clérac; Christopher E Anson; Annie K Powell
Journal:  Dalton Trans       Date:  2004-02-24       Impact factor: 4.390

  2 in total

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