| Literature DB >> 23468715 |
Abstract
In the mononuclear title salt, (C5H6N)2[Cu(C5H2N2O4)2(H2O)2]·2H2O, the Cu(II) ion is located on an inversion centre and is coordinated by two chelating pyrazole-3,5-dicarboxyl-ate anions and two water mol-ecules, forming a Jahn-Teller-distorted CuN2O4 octa-hedron. O-H⋯O and N-H⋯O hydrogen bonds are formed between water mol-ecules, complex anions and the pyridine counter-cations, leading to the formation of layers parallel to (100). The layers are held together by weak C-H⋯O hydrogen bonds.Entities:
Year: 2012 PMID: 23468715 PMCID: PMC3588750 DOI: 10.1107/S1600536812046508
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| (C5H6N)2[Cu(C5H2N2O4)2(H2O)2]·2H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 1917 reflections |
| θ = 2.2–25.0° | |
| µ = 0.96 mm−1 | |
| β = 95.600 (2)° | Prism, blue |
| 0.34 × 0.18 × 0.06 mm | |
| Bruker SMART CCD diffractometer | 2106 independent reflections |
| Radiation source: fine-focus sealed tube | 1802 reflections with |
| Graphite monochromator | |
| phi and ω scans | θmax = 25.0°, θmin = 2.2° |
| Absorption correction: multi-scan ( | |
| 3386 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2106 reflections | (Δ/σ)max < 0.001 |
| 193 parameters | Δρmax = 0.50 e Å−3 |
| 5 restraints | Δρmin = −0.41 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cu1 | 0.5000 | 0.5000 | 0.5000 | 0.0307 (3) | |
| O1 | 0.3159 (5) | 1.0520 (5) | 0.7574 (2) | 0.0340 (10) | |
| O3 | 0.7070 (4) | 0.9725 (6) | 0.5173 (2) | 0.0334 (10) | |
| N1 | 0.3911 (5) | 0.6681 (6) | 0.6461 (2) | 0.0253 (11) | |
| H1 | 0.3367 | 0.5826 | 0.6599 | 0.030* | |
| O4 | 0.6331 (4) | 0.6957 (5) | 0.4799 (2) | 0.0303 (10) | |
| N2 | 0.4725 (5) | 0.6559 (6) | 0.5890 (2) | 0.0250 (10) | |
| C2 | 0.4060 (6) | 0.8331 (8) | 0.6791 (3) | 0.0238 (12) | |
| O2 | 0.2622 (5) | 0.7604 (6) | 0.7754 (2) | 0.0405 (11) | |
| C1 | 0.3205 (6) | 0.8838 (8) | 0.7425 (3) | 0.0265 (13) | |
| C4 | 0.5402 (6) | 0.8162 (7) | 0.5856 (3) | 0.0220 (12) | |
| O5 | 0.2915 (6) | 0.6726 (6) | 0.4319 (3) | 0.0425 (11) | |
| H3A | 0.290 (8) | 0.779 (4) | 0.444 (4) | 0.051* | |
| H3B | 0.287 (8) | 0.679 (10) | 0.3864 (12) | 0.051* | |
| C5 | 0.6349 (6) | 0.8345 (7) | 0.5240 (3) | 0.0221 (12) | |
| C3 | 0.5020 (6) | 0.9310 (8) | 0.6420 (3) | 0.0270 (13) | |
| H2 | 0.5345 | 1.0487 | 0.6523 | 0.032* | |
| O6 | 0.7456 (6) | 0.6665 (6) | 0.3457 (3) | 0.0482 (13) | |
| H4A | 0.719 (8) | 0.703 (10) | 0.385 (2) | 0.058* | |
| H4B | 0.709 (8) | 0.739 (9) | 0.315 (3) | 0.058* | |
| N3 | 1.1229 (6) | 0.2882 (8) | 0.3354 (3) | 0.0381 (13) | |
| H5 | 1.185 (6) | 0.350 (8) | 0.313 (3) | 0.046* | |
| C9 | 1.0145 (7) | 0.0054 (11) | 0.3514 (4) | 0.0479 (17) | |
| H9 | 1.0028 | −0.1166 | 0.3385 | 0.057* | |
| C10 | 1.1080 (7) | 0.1140 (9) | 0.3174 (4) | 0.0408 (16) | |
| H10 | 1.1615 | 0.0649 | 0.2814 | 0.049* | |
| C7 | 0.9545 (8) | 0.2621 (13) | 0.4227 (4) | 0.056 (2) | |
| H7 | 0.9016 | 0.3144 | 0.4583 | 0.067* | |
| C8 | 0.9389 (7) | 0.0817 (11) | 0.4047 (4) | 0.0496 (19) | |
| H8 | 0.8760 | 0.0102 | 0.4291 | 0.059* | |
| C6 | 1.0501 (8) | 0.3639 (11) | 0.3870 (4) | 0.0512 (19) | |
| H6 | 1.0637 | 0.4862 | 0.3989 | 0.061* |
| Cu1 | 0.0437 (6) | 0.0249 (5) | 0.0268 (5) | −0.0106 (5) | 0.0198 (4) | −0.0103 (5) |
| O1 | 0.042 (3) | 0.029 (2) | 0.033 (2) | 0.0026 (19) | 0.018 (2) | −0.0069 (18) |
| O3 | 0.038 (2) | 0.031 (2) | 0.034 (2) | −0.009 (2) | 0.0175 (19) | −0.0081 (19) |
| N1 | 0.030 (3) | 0.024 (2) | 0.024 (2) | −0.001 (2) | 0.013 (2) | −0.002 (2) |
| O4 | 0.040 (2) | 0.027 (2) | 0.027 (2) | −0.0115 (18) | 0.0212 (19) | −0.0082 (17) |
| N2 | 0.031 (3) | 0.024 (2) | 0.021 (2) | −0.001 (2) | 0.012 (2) | −0.001 (2) |
| C2 | 0.027 (3) | 0.027 (3) | 0.018 (3) | 0.002 (2) | 0.004 (2) | −0.003 (2) |
| O2 | 0.059 (3) | 0.034 (2) | 0.032 (2) | −0.004 (2) | 0.024 (2) | 0.002 (2) |
| C1 | 0.027 (3) | 0.034 (3) | 0.020 (3) | 0.008 (3) | 0.004 (2) | −0.007 (3) |
| C4 | 0.026 (3) | 0.021 (3) | 0.019 (3) | −0.004 (2) | 0.004 (2) | −0.005 (2) |
| O5 | 0.068 (3) | 0.030 (2) | 0.030 (2) | −0.004 (2) | 0.006 (2) | −0.002 (2) |
| C5 | 0.021 (3) | 0.025 (3) | 0.021 (3) | −0.001 (2) | 0.003 (2) | −0.001 (2) |
| C3 | 0.028 (3) | 0.025 (3) | 0.029 (3) | −0.004 (2) | 0.009 (3) | −0.004 (2) |
| O6 | 0.078 (4) | 0.030 (3) | 0.042 (3) | −0.004 (2) | 0.037 (3) | −0.005 (2) |
| N3 | 0.037 (3) | 0.046 (3) | 0.033 (3) | −0.009 (3) | 0.012 (2) | 0.009 (3) |
| C9 | 0.045 (4) | 0.049 (4) | 0.050 (4) | −0.009 (4) | 0.002 (3) | 0.012 (4) |
| C10 | 0.042 (4) | 0.046 (4) | 0.035 (4) | 0.000 (3) | 0.008 (3) | 0.001 (3) |
| C7 | 0.039 (4) | 0.092 (6) | 0.040 (4) | −0.002 (4) | 0.019 (3) | −0.016 (4) |
| C8 | 0.037 (4) | 0.076 (5) | 0.035 (4) | −0.020 (4) | 0.000 (3) | 0.018 (4) |
| C6 | 0.051 (4) | 0.051 (4) | 0.054 (4) | −0.006 (4) | 0.018 (4) | −0.013 (4) |
| Cu1—O4 | 1.959 (4) | O5—H3A | 0.82 (2) |
| Cu1—O4i | 1.959 (4) | O5—H3B | 0.82 (2) |
| Cu1—N2 | 2.006 (4) | C3—H2 | 0.9300 |
| Cu1—N2i | 2.006 (4) | O6—H4A | 0.82 (2) |
| Cu1—O5 | 2.539 (5) | O6—H4B | 0.82 (2) |
| Cu1—O5i | 2.539 (5) | N3—C10 | 1.325 (9) |
| O1—C1 | 1.267 (7) | N3—C6 | 1.325 (8) |
| O3—C5 | 1.230 (6) | N3—H5 | 0.87 (2) |
| N1—N2 | 1.341 (6) | C9—C8 | 1.367 (10) |
| N1—C2 | 1.351 (7) | C9—C10 | 1.371 (9) |
| N1—H1 | 0.8600 | C9—H9 | 0.9300 |
| O4—C5 | 1.292 (6) | C10—H10 | 0.9300 |
| N2—C4 | 1.342 (7) | C7—C8 | 1.369 (11) |
| C2—C3 | 1.374 (8) | C7—C6 | 1.373 (10) |
| C2—C1 | 1.502 (7) | C7—H7 | 0.9300 |
| O2—C1 | 1.239 (7) | C8—H8 | 0.9300 |
| C4—C3 | 1.393 (7) | C6—H6 | 0.9300 |
| C4—C5 | 1.491 (7) | ||
| O4—Cu1—O4i | 179.999 (1) | H3A—O5—H3B | 102 (7) |
| O4—Cu1—N2 | 81.99 (16) | O3—C5—O4 | 124.5 (5) |
| O4i—Cu1—N2 | 98.01 (16) | O3—C5—C4 | 121.2 (5) |
| O4—Cu1—N2i | 98.01 (16) | O4—C5—C4 | 114.3 (5) |
| O4i—Cu1—N2i | 81.99 (16) | C2—C3—C4 | 105.2 (5) |
| N2—Cu1—N2i | 179.999 (1) | C2—C3—H2 | 127.4 |
| O4—Cu1—O5 | 90.92 (17) | C4—C3—H2 | 127.4 |
| O4i—Cu1—O5 | 89.08 (17) | H4A—O6—H4B | 103 (7) |
| N2—Cu1—O5 | 86.97 (17) | C10—N3—C6 | 121.9 (6) |
| N2i—Cu1—O5 | 93.03 (17) | C10—N3—H5 | 117 (5) |
| N2—N1—C2 | 110.8 (4) | C6—N3—H5 | 121 (5) |
| N2—N1—H1 | 124.6 | C8—C9—C10 | 118.0 (7) |
| C2—N1—H1 | 124.6 | C8—C9—H9 | 121.0 |
| C5—O4—Cu1 | 116.0 (3) | C10—C9—H9 | 121.0 |
| N1—N2—C4 | 106.3 (4) | N3—C10—C9 | 120.7 (7) |
| N1—N2—Cu1 | 141.0 (4) | N3—C10—H10 | 119.6 |
| C4—N2—Cu1 | 111.6 (3) | C9—C10—H10 | 119.6 |
| N1—C2—C3 | 107.6 (5) | C8—C7—C6 | 118.5 (7) |
| N1—C2—C1 | 121.1 (5) | C8—C7—H7 | 120.8 |
| C3—C2—C1 | 131.3 (5) | C6—C7—H7 | 120.8 |
| O2—C1—O1 | 126.0 (5) | C9—C8—C7 | 120.8 (7) |
| O2—C1—C2 | 118.2 (5) | C9—C8—H8 | 119.6 |
| O1—C1—C2 | 115.8 (5) | C7—C8—H8 | 119.6 |
| N2—C4—C3 | 110.1 (5) | N3—C6—C7 | 120.1 (7) |
| N2—C4—C5 | 115.5 (4) | N3—C6—H6 | 120.0 |
| C3—C4—C5 | 134.4 (5) | C7—C6—H6 | 120.0 |
| N2—Cu1—O4—C5 | −5.9 (4) | Cu1—N2—C4—C5 | −7.8 (6) |
| N2i—Cu1—O4—C5 | 174.1 (4) | Cu1—O4—C5—O3 | −176.5 (4) |
| C2—N1—N2—C4 | −0.1 (6) | Cu1—O4—C5—C4 | 3.3 (6) |
| C2—N1—N2—Cu1 | −166.3 (5) | N2—C4—C5—O3 | −176.9 (5) |
| O4—Cu1—N2—N1 | 173.2 (6) | C3—C4—C5—O3 | 4.2 (10) |
| O4i—Cu1—N2—N1 | −6.8 (6) | N2—C4—C5—O4 | 3.3 (7) |
| O4—Cu1—N2—C4 | 7.4 (4) | C3—C4—C5—O4 | −175.6 (6) |
| O4i—Cu1—N2—C4 | −172.6 (4) | N1—C2—C3—C4 | 0.8 (6) |
| N2—N1—C2—C3 | −0.5 (6) | C1—C2—C3—C4 | −176.5 (6) |
| N2—N1—C2—C1 | 177.2 (5) | N2—C4—C3—C2 | −0.9 (7) |
| N1—C2—C1—O2 | 16.6 (8) | C5—C4—C3—C2 | 178.0 (6) |
| C3—C2—C1—O2 | −166.4 (6) | C6—N3—C10—C9 | 0.7 (11) |
| N1—C2—C1—O1 | −163.7 (5) | C8—C9—C10—N3 | −0.8 (10) |
| C3—C2—C1—O1 | 13.3 (9) | C10—C9—C8—C7 | 1.1 (11) |
| N1—N2—C4—C3 | 0.6 (6) | C6—C7—C8—C9 | −1.3 (11) |
| Cu1—N2—C4—C3 | 171.3 (4) | C10—N3—C6—C7 | −0.9 (11) |
| N1—N2—C4—C5 | −178.5 (5) | C8—C7—C6—N3 | 1.1 (12) |
| H··· | ||||
| N1—H1···O6i | 0.86 | 1.99 | 2.783 (6) | 154 |
| O5—H3 | 0.81 (4) | 1.95 (4) | 2.764 (6) | 175 (8) |
| O5—H3 | 0.82 (2) | 2.04 (3) | 2.845 (6) | 170 (7) |
| O6—H4 | 0.82 (5) | 1.96 (5) | 2.735 (7) | 159 (7) |
| O6—H4 | 0.82 (6) | 2.01 (6) | 2.801 (6) | 162 (7) |
| N3—H5···O1iv | 0.87 (6) | 1.81 (6) | 2.665 (7) | 171 (6) |
| C6—H6···O5v | 0.93 | 2.55 | 3.247 (9) | 132 |
| C8—H8···O3vi | 0.93 | 2.36 | 3.211 (8) | 151 |
| C10—H10···O2vii | 0.93 | 2.58 | 3.231 (8) | 128 |
| Cu1—O4 | 1.959 (4) |
| Cu1—N2 | 2.006 (4) |
| Cu1—O5 | 2.539 (5) |
| O4—Cu1—N2 | 81.99 (16) |
| O4—Cu1—O5 | 90.92 (17) |
| N2—Cu1—O5 | 86.97 (17) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1⋯O6i | 0.86 | 1.99 | 2.783 (6) | 154 |
| O5—H3 | 0.81 (4) | 1.95 (4) | 2.764 (6) | 175 (8) |
| O5—H3 | 0.82 (2) | 2.04 (3) | 2.845 (6) | 170 (7) |
| O6—H4 | 0.82 (5) | 1.96 (5) | 2.735 (7) | 159 (7) |
| O6—H4 | 0.82 (6) | 2.01 (6) | 2.801 (6) | 162 (7) |
| N3—H5⋯O1iv | 0.87 (6) | 1.81 (6) | 2.665 (7) | 171 (6) |
| C6—H6⋯O5v | 0.93 | 2.55 | 3.247 (9) | 132 |
| C8—H8⋯O3vi | 0.93 | 2.36 | 3.211 (8) | 151 |
| C10—H10⋯O2vii | 0.93 | 2.58 | 3.231 (8) | 128 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .