Literature DB >> 23468702

cis-Dichloridobis(2-isocyano-phenyl 4-meth-oxy-benzoate)palladium(II) chloro-form monosolvate.

Alexander Tskhovrebov1, Matti Haukka.   

Abstract

In the title compound, [PdCl2(C15H11NO3)2]·CHCl3, the Pd(II) atom adopts a slightly distorted square-planar coordination geometry composed of two Cl atoms in cis positions and two C atoms from isocyano-phenyl ligands. The mol-ecular conformation is stabilized by π-π stacking inter-actions [shortest centroid-centroid distance = 3.600 (1) Å] between substituted benzene rings of different ligands. The crystal packing is characterized by C-H⋯O and C-H⋯Cl inter-actions involving the chloro-form solvent mol-ecules.

Entities:  

Year:  2012        PMID: 23468702      PMCID: PMC3588737          DOI: 10.1107/S1600536812045801

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For further information on acyclic diamino­carbenes, see: Slaughter (2012 ▶); Boyarskiy et al. (2012 ▶). For background to the Passerini reaction, see: Banfi & Riva (2005 ▶). For novel metal-mediated coupling as a route to cyclic carbenes and amino­carbene complexes, see: Luzyanin et al. (2009a ▶,b ▶); Tskhovrebov et al. (2011 ▶); Chay et al. (2012 ▶). For related structures, see: Davies et al. (1996 ▶); Bertani et al. (1991 ▶); Bonati & Minghetti (1970 ▶); Luzyanin et al. (2009a ▶,b ▶); Michelin et al. (1988a ▶,b ▶); Rourke (2007 ▶). For bond lengths in coordin­ation complexes, see: Orpen et al. (1989 ▶).

Experimental

Crystal data

[PdCl2(C15H11NO3)2]·CHCl3 M = 803.16 Orthorhombic, a = 7.4457 (1) Å b = 12.1352 (4) Å c = 36.1109 (11) Å V = 3262.80 (15) Å3 Z = 4 Mo Kα radiation μ = 1.02 mm−1 T = 100 K 0.35 × 0.23 × 0.10 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008 ▶)T min = 0.717, T max = 0.903 24908 measured reflections 9228 independent reflections 7397 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.067 S = 1.01 9228 reflections 408 parameters H-atom parameters constrained Δρmax = 0.61 e Å−3 Δρmin = −0.79 e Å−3 Absolute structure: Flack (1983 ▶), 3936 Friedel pairs Flack parameter: −0.011 (17) Data collection: COLLECT (Nonius, 1997 ▶); cell refinement: DENZO and SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2009 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812045801/zq2184sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812045801/zq2184Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[PdCl2(C15H11NO3)2]·CHCl3F(000) = 1608
Mr = 803.16Dx = 1.635 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 24908 reflections
a = 7.4457 (1) Åθ = 3.2–30.0°
b = 12.1352 (4) ŵ = 1.02 mm1
c = 36.1109 (11) ÅT = 100 K
V = 3262.80 (15) Å3Block, colourless
Z = 40.35 × 0.23 × 0.10 mm
Nonius KappaCCD diffractometer9228 independent reflections
Radiation source: fine-focus sealed tube7397 reflections with I > 2σ(I)
Horizontally mounted graphite crystal monochromatorRint = 0.046
Detector resolution: 9 pixels mm-1θmax = 30.0°, θmin = 3.2°
φ scans and ω scans with κ offseth = −10→10
Absorption correction: multi-scan (SADABS; Sheldrick, 2008)k = −17→15
Tmin = 0.717, Tmax = 0.903l = −50→41
24908 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.037H-atom parameters constrained
wR(F2) = 0.067w = 1/[σ2(Fo2) + (0.0262P)2] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max = 0.004
9228 reflectionsΔρmax = 0.61 e Å3
408 parametersΔρmin = −0.79 e Å3
0 restraintsAbsolute structure: Flack (1983), 3936 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.011 (17)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Pd10.70069 (3)0.468290 (17)0.888077 (5)0.01742 (5)
Cl10.77179 (10)0.36814 (6)0.940105 (18)0.02588 (17)
Cl20.78655 (11)0.32749 (5)0.849385 (18)0.02437 (15)
Cl30.19677 (12)1.19482 (6)0.947449 (18)0.02811 (16)
Cl40.16546 (10)1.10483 (7)0.873361 (19)0.03021 (18)
Cl50.30198 (14)1.32462 (7)0.88439 (2)0.0512 (2)
O10.7349 (2)0.81404 (15)0.82187 (5)0.0201 (4)
O20.5584 (2)0.96590 (18)0.81736 (5)0.0243 (4)
O30.8859 (2)0.99125 (16)0.98090 (5)0.0236 (5)
O40.3493 (2)0.79408 (15)0.89629 (5)0.0176 (4)
O50.1775 (3)0.65489 (16)0.91802 (5)0.0243 (5)
O60.0757 (3)0.58547 (17)0.74567 (5)0.0231 (5)
N10.6421 (3)0.60184 (19)0.81643 (6)0.0197 (5)
N20.5755 (3)0.66170 (19)0.93709 (6)0.0181 (5)
C10.6542 (3)0.5533 (2)0.84336 (8)0.0202 (6)
C20.6443 (3)0.6656 (2)0.78406 (7)0.0181 (6)
C30.6047 (4)0.6183 (3)0.75010 (7)0.0213 (6)
H30.57600.54220.74840.026*
C40.6076 (4)0.6834 (3)0.71872 (8)0.0242 (7)
H40.58020.65220.69530.029*
C50.6502 (4)0.7939 (3)0.72142 (8)0.0246 (7)
H50.65050.83830.69970.030*
C60.6925 (4)0.8410 (2)0.75529 (7)0.0220 (6)
H60.72450.91660.75670.026*
C70.6877 (4)0.7772 (2)0.78685 (7)0.0175 (6)
C80.6627 (4)0.9124 (2)0.83496 (7)0.0175 (6)
C90.7281 (3)0.9349 (2)0.87254 (7)0.0158 (6)
C100.6814 (3)1.0340 (2)0.88931 (7)0.0187 (5)
H100.61371.08670.87580.022*
C110.7323 (3)1.0570 (2)0.92547 (7)0.0186 (6)
H110.70031.12520.93660.022*
C120.8307 (3)0.9794 (2)0.94535 (7)0.0185 (6)
C130.8259 (4)1.0869 (2)1.00095 (7)0.0293 (7)
H13A0.86861.15360.98840.044*
H13B0.87391.08471.02620.044*
H13C0.69441.08751.00190.044*
C140.8794 (3)0.8798 (2)0.92857 (7)0.0176 (6)
H140.94650.82670.94210.021*
C150.8303 (3)0.8586 (2)0.89253 (7)0.0173 (6)
H150.86620.79160.88110.021*
C160.6242 (4)0.5885 (2)0.91953 (7)0.0194 (6)
C170.5048 (4)0.7558 (2)0.95387 (7)0.0165 (6)
C180.5512 (3)0.7851 (2)0.98970 (7)0.0176 (6)
H180.63060.74031.00380.021*
C190.4803 (3)0.8805 (2)1.00472 (7)0.0173 (6)
H190.51050.90151.02930.021*
C200.3652 (3)0.9456 (2)0.98394 (7)0.0176 (6)
H200.31701.01100.99440.021*
C210.3197 (4)0.9165 (2)0.94812 (7)0.0171 (6)
H210.24070.96170.93410.021*
C220.3893 (3)0.8223 (2)0.93303 (7)0.0152 (6)
C230.2352 (3)0.7055 (2)0.89214 (8)0.0182 (6)
C240.1980 (4)0.6801 (2)0.85274 (7)0.0153 (5)
C250.1211 (4)0.5787 (2)0.84476 (7)0.0198 (6)
H250.09400.52930.86440.024*
C260.0834 (3)0.5485 (2)0.80881 (7)0.0203 (6)
H260.03490.47780.80350.024*
C270.1174 (3)0.6232 (2)0.78018 (7)0.0185 (6)
C280.1047 (4)0.6582 (3)0.71486 (7)0.0269 (7)
H28A0.03540.72600.71850.040*
H28B0.06580.62210.69200.040*
H28C0.23270.67630.71310.040*
C290.1902 (4)0.7258 (2)0.78777 (7)0.0185 (6)
H290.21170.77650.76820.022*
C300.2316 (3)0.7546 (2)0.82398 (7)0.0182 (6)
H300.28250.82470.82920.022*
C310.1513 (4)1.2255 (2)0.90068 (7)0.0237 (7)
H310.02671.25570.89880.028*
U11U22U33U12U13U23
Pd10.02268 (10)0.01504 (10)0.01454 (9)0.00299 (10)0.00058 (9)−0.00068 (9)
Cl10.0409 (4)0.0209 (4)0.0159 (3)0.0074 (3)−0.0020 (3)−0.0008 (3)
Cl20.0353 (4)0.0195 (3)0.0184 (3)0.0051 (4)0.0003 (3)−0.0039 (3)
Cl30.0448 (4)0.0220 (4)0.0175 (3)0.0023 (4)−0.0028 (4)0.0009 (3)
Cl40.0401 (4)0.0340 (4)0.0165 (3)0.0044 (4)−0.0049 (3)−0.0018 (3)
Cl50.0628 (5)0.0512 (6)0.0397 (5)−0.0301 (5)−0.0031 (6)0.0165 (4)
O10.0291 (11)0.0193 (10)0.0119 (9)0.0024 (9)−0.0041 (8)−0.0030 (8)
O20.0310 (11)0.0232 (11)0.0186 (11)0.0062 (11)−0.0058 (8)0.0005 (10)
O30.0283 (10)0.0287 (13)0.0139 (10)0.0011 (9)−0.0028 (8)−0.0068 (9)
O40.0247 (10)0.0177 (10)0.0104 (10)−0.0043 (8)−0.0010 (7)0.0006 (7)
O50.0324 (11)0.0296 (12)0.0109 (9)−0.0083 (10)0.0024 (9)−0.0012 (8)
O60.0312 (11)0.0284 (12)0.0097 (10)−0.0021 (10)−0.0025 (8)−0.0009 (9)
N10.0214 (12)0.0170 (13)0.0207 (13)0.0035 (10)0.0028 (10)0.0013 (10)
N20.0240 (12)0.0146 (13)0.0157 (12)0.0036 (10)0.0030 (10)0.0016 (10)
C10.0197 (14)0.0167 (16)0.0240 (15)0.0023 (11)0.0033 (11)−0.0053 (12)
C20.0170 (13)0.0228 (16)0.0145 (14)0.0005 (12)0.0000 (11)0.0000 (12)
C30.0226 (14)0.0219 (16)0.0194 (15)−0.0021 (13)0.0001 (12)−0.0042 (13)
C40.0263 (15)0.0324 (19)0.0138 (15)−0.0011 (14)0.0004 (12)−0.0041 (13)
C50.0286 (16)0.0288 (17)0.0165 (15)−0.0035 (14)0.0008 (12)0.0008 (13)
C60.0283 (14)0.0202 (15)0.0176 (14)−0.0023 (15)0.0017 (14)−0.0017 (11)
C70.0188 (13)0.0208 (14)0.0128 (12)0.0011 (13)−0.0010 (12)−0.0037 (11)
C80.0210 (15)0.0163 (14)0.0150 (13)−0.0017 (12)0.0016 (11)0.0010 (11)
C90.0185 (13)0.0153 (13)0.0137 (12)−0.0027 (11)0.0008 (11)−0.0002 (10)
C100.0196 (12)0.0157 (12)0.0207 (13)0.0019 (13)−0.0011 (13)0.0053 (13)
C110.0232 (14)0.0135 (14)0.0190 (13)−0.0018 (11)0.0029 (11)−0.0015 (10)
C120.0182 (13)0.0235 (15)0.0138 (13)−0.0040 (13)−0.0001 (10)−0.0022 (12)
C130.0363 (18)0.0322 (18)0.0192 (15)−0.0030 (16)0.0014 (14)−0.0105 (13)
C140.0184 (13)0.0176 (15)0.0169 (14)0.0011 (12)−0.0009 (11)0.0029 (12)
C150.0167 (13)0.0175 (14)0.0177 (14)−0.0002 (11)0.0003 (11)−0.0001 (11)
C160.0210 (14)0.0214 (16)0.0158 (14)0.0002 (13)0.0001 (11)0.0043 (12)
C170.0188 (13)0.0155 (14)0.0152 (14)0.0003 (12)0.0039 (11)0.0017 (12)
C180.0159 (13)0.0190 (15)0.0180 (15)0.0010 (12)0.0002 (11)0.0040 (12)
C190.0202 (14)0.0214 (16)0.0103 (13)−0.0052 (13)0.0006 (11)−0.0004 (12)
C200.0220 (13)0.0147 (15)0.0160 (13)0.0004 (11)0.0026 (11)−0.0011 (11)
C210.0196 (13)0.0166 (14)0.0153 (13)0.0003 (12)0.0002 (11)0.0005 (11)
C220.0204 (13)0.0166 (15)0.0087 (13)−0.0034 (12)0.0002 (10)0.0009 (11)
C230.0189 (13)0.0194 (14)0.0162 (14)0.0025 (11)0.0020 (11)0.0006 (12)
C240.0158 (12)0.0183 (13)0.0118 (12)−0.0001 (13)−0.0002 (12)0.0015 (10)
C250.0218 (14)0.0222 (16)0.0154 (14)−0.0002 (12)0.0018 (11)0.0032 (12)
C260.0214 (13)0.0196 (17)0.0198 (14)−0.0043 (13)0.0008 (11)0.0002 (13)
C270.0157 (13)0.0248 (16)0.0151 (14)0.0033 (13)−0.0006 (11)−0.0011 (12)
C280.0300 (16)0.038 (2)0.0127 (14)0.0025 (15)−0.0032 (13)0.0035 (13)
C290.0196 (13)0.0231 (15)0.0128 (12)0.0003 (14)−0.0006 (12)0.0032 (11)
C300.0205 (14)0.0184 (14)0.0157 (13)−0.0004 (12)0.0012 (11)−0.0024 (11)
C310.0267 (15)0.0252 (17)0.0192 (15)0.0005 (13)−0.0039 (12)0.0044 (12)
Pd1—C161.935 (3)C10—H100.9500
Pd1—C11.947 (3)C11—C121.393 (4)
Pd1—Cl22.2979 (7)C11—H110.9500
Pd1—Cl12.2994 (7)C12—C141.400 (4)
Cl3—C311.762 (3)C13—H13A0.9800
Cl4—C311.768 (3)C13—H13B0.9800
Cl5—C311.747 (3)C13—H13C0.9800
O1—C71.387 (3)C14—C151.376 (4)
O1—C81.392 (3)C14—H140.9500
O2—C81.195 (3)C15—H150.9500
O3—C121.356 (3)C17—C181.386 (4)
O3—C131.439 (3)C17—C221.400 (4)
O4—C231.379 (3)C18—C191.383 (4)
O4—C221.402 (3)C18—H180.9500
O5—C231.198 (3)C19—C201.386 (4)
O6—C271.364 (3)C19—H190.9500
O6—C281.437 (3)C20—C211.383 (3)
N1—C11.141 (3)C20—H200.9500
N1—C21.402 (3)C21—C221.368 (3)
N2—C161.150 (3)C21—H210.9500
N2—C171.395 (3)C23—C241.482 (3)
C2—C31.386 (4)C24—C251.387 (4)
C2—C71.396 (4)C24—C301.400 (3)
C3—C41.382 (4)C25—C261.378 (3)
C3—H30.9500C25—H250.9500
C4—C51.381 (4)C26—C271.398 (4)
C4—H40.9500C26—H260.9500
C5—C61.386 (4)C27—C291.385 (4)
C5—H50.9500C28—H28A0.9800
C6—C71.378 (3)C28—H28B0.9800
C6—H60.9500C28—H28C0.9800
C8—C91.467 (3)C29—C301.388 (3)
C9—C101.391 (3)C29—H290.9500
C9—C151.399 (4)C30—H300.9500
C10—C111.388 (3)C31—H311.0000
C16—Pd1—C192.00 (12)C14—C15—C9120.6 (3)
C16—Pd1—Cl2178.37 (8)C14—C15—H15119.7
C1—Pd1—Cl286.52 (8)C9—C15—H15119.7
C16—Pd1—Cl189.24 (8)N2—C16—Pd1177.4 (3)
C1—Pd1—Cl1176.91 (8)C18—C17—N2121.4 (2)
Cl2—Pd1—Cl192.28 (3)C18—C17—C22120.5 (3)
C7—O1—C8119.2 (2)N2—C17—C22118.1 (2)
C12—O3—C13117.9 (2)C19—C18—C17119.1 (3)
C23—O4—C22115.11 (19)C19—C18—H18120.5
C27—O6—C28117.8 (2)C17—C18—H18120.5
C1—N1—C2174.3 (3)C18—C19—C20120.0 (3)
C16—N2—C17172.0 (3)C18—C19—H19120.0
N1—C1—Pd1174.2 (2)C20—C19—H19120.0
C3—C2—C7121.0 (3)C21—C20—C19120.8 (3)
C3—C2—N1120.5 (3)C21—C20—H20119.6
C7—C2—N1118.5 (2)C19—C20—H20119.6
C4—C3—C2119.1 (3)C22—C21—C20119.5 (2)
C4—C3—H3120.5C22—C21—H21120.2
C2—C3—H3120.5C20—C21—H21120.2
C5—C4—C3120.1 (3)C21—C22—C17120.0 (2)
C5—C4—H4120.0C21—C22—O4120.1 (2)
C3—C4—H4120.0C17—C22—O4119.9 (2)
C4—C5—C6120.9 (3)O5—C23—O4122.4 (3)
C4—C5—H5119.5O5—C23—C24125.2 (2)
C6—C5—H5119.5O4—C23—C24112.4 (2)
C7—C6—C5119.5 (3)C25—C24—C30119.5 (2)
C7—C6—H6120.2C25—C24—C23117.4 (2)
C5—C6—H6120.2C30—C24—C23123.0 (2)
C6—C7—O1124.5 (2)C26—C25—C24121.1 (3)
C6—C7—C2119.4 (2)C26—C25—H25119.5
O1—C7—C2115.9 (2)C24—C25—H25119.5
O2—C8—O1122.4 (2)C25—C26—C27119.1 (3)
O2—C8—C9127.3 (3)C25—C26—H26120.4
O1—C8—C9110.2 (2)C27—C26—H26120.4
C10—C9—C15118.9 (2)O6—C27—C29124.9 (2)
C10—C9—C8118.7 (2)O6—C27—C26114.6 (2)
C15—C9—C8122.3 (2)C29—C27—C26120.5 (2)
C11—C10—C9121.0 (2)O6—C28—H28A109.5
C11—C10—H10119.5O6—C28—H28B109.5
C9—C10—H10119.5H28A—C28—H28B109.5
C10—C11—C12119.5 (2)O6—C28—H28C109.5
C10—C11—H11120.3H28A—C28—H28C109.5
C12—C11—H11120.3H28B—C28—H28C109.5
O3—C12—C11125.1 (2)C27—C29—C30120.0 (2)
O3—C12—C14115.0 (2)C27—C29—H29120.0
C11—C12—C14119.8 (2)C30—C29—H29120.0
O3—C13—H13A109.5C29—C30—C24119.8 (3)
O3—C13—H13B109.5C29—C30—H30120.1
H13A—C13—H13B109.5C24—C30—H30120.1
O3—C13—H13C109.5Cl5—C31—Cl3110.17 (15)
H13A—C13—H13C109.5Cl5—C31—Cl4110.14 (15)
H13B—C13—H13C109.5Cl3—C31—Cl4110.39 (16)
C15—C14—C12120.1 (3)Cl5—C31—H31108.7
C15—C14—H14119.9Cl3—C31—H31108.7
C12—C14—H14119.9Cl4—C31—H31108.7
D—H···AD—HH···AD···AD—H···A
C4—H4···O2i0.952.533.193 (4)127
C6—H6···O6ii0.952.533.433 (4)158
C19—H19···O5iii0.952.373.182 (3)143
C20—H20···Cl1iv0.952.803.622 (3)145
C31—H31···Cl1v1.002.773.607 (3)141
C31—H31···Cl2v1.002.673.513 (3)142
Table 1

Selected bond lengths (Å)

Pd1—C161.935 (3)
Pd1—C11.947 (3)
Pd1—Cl22.2979 (7)
Pd1—Cl12.2994 (7)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C4—H4⋯O2i 0.952.533.193 (4)127
C6—H6⋯O6ii 0.952.533.433 (4)158
C19—H19⋯O5iii 0.952.373.182 (3)143
C20—H20⋯Cl1iv 0.952.803.622 (3)145
C31—H31⋯Cl1v 1.002.773.607 (3)141
C31—H31⋯Cl2v 1.002.673.513 (3)142

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Metal-mediated [2+3] cycloaddition of nitrones to palladium-bound isonitriles.

Authors:  Konstantin V Luzyanin; Alexander G Tskhovrebov; M Fátima C Guedes da Silva; Matti Haukka; Armando J L Pombeiro; Vadim Yu Kukushkin
Journal:  Chemistry       Date:  2009-06-08       Impact factor: 5.236

  2 in total

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