Literature DB >> 23467485

Current trends in the development and application of molecular technologies for cancer epigenetics.

Hyeran Jang1, Hyunjin Shin.   

Abstract

Current progress in epigenetic research supports the view that diet and dietary components are important in cancer etiology by enhancing or inhibiting carcinogenesis. Since diet and dietary factors may significantly contribute to the causation and progression of many cancers, it is important to find the molecular mechanisms of action of such dietary factors for cancer prevention and treatment. Recently, the role of epigenetic mechanisms in the cancer development and progression has attracted more attention as additional evidence along with traditional DNA sequence based mechanisms such as mutations and structural re-arrangements. Such an increasing interest in cancer epigenetics has also accelerated the development and application of molecular assays and tools for DNA methylation detection and histone modification enrichment analysis. In this paper, key assays and methods for epigenetic research are reviewed and discussed in terms of their utility and usability. In addition, more advanced methods for genome-wide analysis are introduced as part of upcoming research trends and directions.

Entities:  

Keywords:  Butyrate; Cancer; Diet; Epigenetic; Histone modifications; Methyl sources; Technology

Mesh:

Substances:

Year:  2013        PMID: 23467485      PMCID: PMC3581990          DOI: 10.3748/wjg.v19.i7.1030

Source DB:  PubMed          Journal:  World J Gastroenterol        ISSN: 1007-9327            Impact factor:   5.742


  100 in total

1.  De novo quantitative bisulfite sequencing using the pyrosequencing technology.

Authors:  Jean-Michel Dupont; Jörg Tost; Hélène Jammes; Ivo Glynne Gut
Journal:  Anal Biochem       Date:  2004-10-01       Impact factor: 3.365

2.  The ENCODE (ENCyclopedia Of DNA Elements) Project.

Authors: 
Journal:  Science       Date:  2004-10-22       Impact factor: 47.728

3.  Studies on highly metabolically active acetylation and phosphorylation of histones.

Authors:  V Jackson; A Shires; R Chalkley; D K Granner
Journal:  J Biol Chem       Date:  1975-07-10       Impact factor: 5.157

4.  Use of restriction enzymes to study eukaryotic DNA methylation: II. The symmetry of methylated sites supports semi-conservative copying of the methylation pattern.

Authors:  A P Bird
Journal:  J Mol Biol       Date:  1978-01-05       Impact factor: 5.469

5.  Vitamin B-12 deficiency induces anomalies of base substitution and methylation in the DNA of rat colonic epithelium.

Authors:  Sang-Woon Choi; Simonetta Friso; Haifa Ghandour; Pamela J Bagley; Jacob Selhub; Joel B Mason
Journal:  J Nutr       Date:  2004-04       Impact factor: 4.798

6.  Molecular characterization of the tumor microenvironment in breast cancer.

Authors:  Minna Allinen; Rameen Beroukhim; Li Cai; Cameron Brennan; Jaana Lahti-Domenici; Haiyan Huang; Dale Porter; Min Hu; Lynda Chin; Andrea Richardson; Stuart Schnitt; William R Sellers; Kornelia Polyak
Journal:  Cancer Cell       Date:  2004-07       Impact factor: 31.743

Review 7.  Epigenetics and cancer.

Authors:  Anders H Lund; Maarten van Lohuizen
Journal:  Genes Dev       Date:  2004-10-01       Impact factor: 11.361

8.  Epigenetic modification regulates both expression of tumor-associated genes and cell cycle progressing in human colon cancer cell lines: Colo-320 and SW1116.

Authors:  Jing Yuan Fang; Ying Xuan Chen; Juan Lu; Rong Lu; Li Yang; Hong Yin Zhu; Wei Qi Gu; Lun Gen Lu
Journal:  Cell Res       Date:  2004-06       Impact factor: 25.617

9.  Genomic hypomethylation is specific for preneoplastic liver in folate/methyl deficient rats and does not occur in non-target tissues.

Authors:  Igor P Pogribny; S Jill James; Stefanie Jernigan; Marta Pogribna
Journal:  Mutat Res       Date:  2004-04-14       Impact factor: 2.433

Review 10.  Epigenetics in human disease and prospects for epigenetic therapy.

Authors:  Gerda Egger; Gangning Liang; Ana Aparicio; Peter A Jones
Journal:  Nature       Date:  2004-05-27       Impact factor: 49.962

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  2 in total

1.  Connexin 32 and 43 promoter methylation in Helicobacter pylori-associated gastric tumorigenesis.

Authors:  Yu Wang; Li-Hua Huang; Can-Xia Xu; Jing Xiao; Li Zhou; Dan Cao; Xiao-Min Liu; Yong Qi
Journal:  World J Gastroenterol       Date:  2014-09-07       Impact factor: 5.742

Review 2.  Augmentation of Cationic Antimicrobial Peptide Production with Histone Deacetylase Inhibitors as a Novel Epigenetic Therapy for Bacterial Infections.

Authors:  Roshan D Yedery; Ann E Jerse
Journal:  Antibiotics (Basel)       Date:  2015-01-12
  2 in total

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