Literature DB >> 23467124

Rise of the RNA machines: exploring the structure of long non-coding RNAs.

Irina V Novikova1, Scott P Hennelly, Chang-Shung Tung, Karissa Y Sanbonmatsu.   

Abstract

Novel, profound and unexpected roles of long non-coding RNAs (lncRNAs) are emerging in critical aspects of gene regulation. Thousands of lncRNAs have been recently discovered in a wide range of mammalian systems, related to development, epigenetics, cancer, brain function and hereditary disease. The structural biology of these lncRNAs presents a brave new RNA world, which may contain a diverse zoo of new architectures and mechanisms. While structural studies of lncRNAs are in their infancy, we describe existing structural data for lncRNAs, as well as crystallographic studies of other RNA machines and their implications for lncRNAs. We also discuss the importance of dynamics in RNA machine mechanism. Determining commonalities between lncRNA systems will help elucidate the evolution and mechanistic role of lncRNAs in disease, creating a structural framework necessary to pursue lncRNA-based therapeutics.
Copyright © 2013. Published by Elsevier Ltd.

Entities:  

Keywords:  LSD; RNP; SHAPE; SRA; epigenetics; lincRNA; lncRNA; lncRNA structure; long non-coding RNA; lysine-specific demethylase; ribonucleoprotein complex; selective 2′-hydroxyl acylation analyzed by primer extension; steroid receptor RNA activator

Mesh:

Substances:

Year:  2013        PMID: 23467124     DOI: 10.1016/j.jmb.2013.02.030

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  59 in total

1.  Visualizing the ai5γ group IIB intron.

Authors:  Srinivas Somarowthu; Michal Legiewicz; Kevin S Keating; Anna Marie Pyle
Journal:  Nucleic Acids Res       Date:  2013-11-06       Impact factor: 16.971

2.  The lncRNA ZEB1-AS1 sponges miR-181a-5p to promote colorectal cancer cell proliferation by regulating Wnt/β-catenin signaling.

Authors:  Shao-Yan Lv; Ti-Dong Shan; Xin-Ting Pan; Zi-Bin Tian; Xi-Shuang Liu; Fu-Guo Liu; Xue-Guo Sun; Hui-Guang Xue; Xin-Hua Li; Yue Han; Li-Juan Sun; Li Chen; Ling-Yun Zhang
Journal:  Cell Cycle       Date:  2018-07-17       Impact factor: 4.534

Review 3.  Non-coding RNAs: Epigenetic regulators of bone development and homeostasis.

Authors:  Mohammad Q Hassan; Coralee E Tye; Gary S Stein; Jane B Lian
Journal:  Bone       Date:  2015-05-31       Impact factor: 4.398

Review 4.  Insights into RNA structure and function from genome-wide studies.

Authors:  Stefanie A Mortimer; Mary Anne Kidwell; Jennifer A Doudna
Journal:  Nat Rev Genet       Date:  2014-05-13       Impact factor: 53.242

Review 5.  Analytical ultracentrifuge: an ideal tool for characterization of non-coding RNAs.

Authors:  Maulik D Badmalia; M Quadir Siddiqui; Tyler Mrozowich; Darren L Gemmill; Trushar R Patel
Journal:  Eur Biophys J       Date:  2020-10-16       Impact factor: 1.733

6.  Specific Recognition of a Single-Stranded RNA Sequence by a Synthetic Antibody Fragment.

Authors:  Yaming Shao; Hao Huang; Daoming Qin; Nan-Sheng Li; Akiko Koide; Jonathan P Staley; Shohei Koide; Anthony A Kossiakoff; Joseph A Piccirilli
Journal:  J Mol Biol       Date:  2016-09-02       Impact factor: 5.469

7.  Genome-wide characterization of cis-acting DNA targets reveals the transcriptional regulatory framework of opaque2 in maize.

Authors:  Chaobin Li; Zhenyi Qiao; Weiwei Qi; Qian Wang; Yue Yuan; Xi Yang; Yuanping Tang; Bing Mei; Yuanda Lv; Han Zhao; Han Xiao; Rentao Song
Journal:  Plant Cell       Date:  2015-02-17       Impact factor: 11.277

8.  Expanding the Scope of RNA Metabolic Labeling with Vinyl Nucleosides and Inverse Electron-Demand Diels-Alder Chemistry.

Authors:  Miles Kubota; Sarah Nainar; Shane M Parker; Whitney England; Filipp Furche; Robert C Spitale
Journal:  ACS Chem Biol       Date:  2019-07-25       Impact factor: 5.100

9.  Towards structural classification of long non-coding RNAs.

Authors:  Karissa Y Sanbonmatsu
Journal:  Biochim Biophys Acta       Date:  2015-10-30

10.  Regulation of poly(A) RNA retention in the nucleus as a survival strategy of plants during hypoxia.

Authors:  Janusz Niedojadło; Konrad Dełeńko; Katarzyna Niedojadło
Journal:  RNA Biol       Date:  2016-03-22       Impact factor: 4.652

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