Literature DB >> 23461416

New tools for the identification of developmentally regulated enhancer regions in embryonic and adult zebrafish.

Mitchell P Levesque1, Jana Krauss, Carla Koehler, Cindy Boden, Matthew P Harris.   

Abstract

We have conducted a screen to identify developmentally regulated enhancers that drive tissue-specific Gal4 expression in zebrafish. We obtained 63 stable transgenic lines with expression patterns in embryonic or adult zebrafish. The use of a newly identified minimal promoter from the medaka edar locus resulted in a relatively unbiased set of expression patterns representing many tissue types derived from all germ layers. Subsequent detailed characterization of selected lines showed strong and reproducible Gal4-driven GFP expression in diverse tissues, including neurons from the central and peripheral nervous systems, pigment cells, erythrocytes, and peridermal cells. By screening adults for GFP expression, we also isolated lines expressed in tissues of the adult zebrafish, including scales, fin rays, and joints. The new and efficient minimal promoter and large number of transactivating driver-lines we identified will provide the zebrafish community with a useful resource for further enhancer trap screening, as well as precise investigation of tissue-specific processes in vivo.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23461416      PMCID: PMC3670562          DOI: 10.1089/zeb.2012.0775

Source DB:  PubMed          Journal:  Zebrafish        ISSN: 1545-8547            Impact factor:   1.985


  56 in total

1.  Enhancer trap integrations in mouse embryonic stem cells give rise to staining patterns in chimaeric embryos with a high frequency and detect endogenous genes.

Authors:  R Korn; M Schoor; H Neuhaus; U Henseling; R Soininen; J Zachgo; A Gossler
Journal:  Mech Dev       Date:  1992-11       Impact factor: 1.882

2.  Cell tracking using a photoconvertible fluorescent protein.

Authors:  Kohei Hatta; Hitomi Tsujii; Tomomi Omura
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

3.  Genetic dissection of neural circuits by Tol2 transposon-mediated Gal4 gene and enhancer trapping in zebrafish.

Authors:  Kazuhide Asakawa; Maximiliano L Suster; Kanta Mizusawa; Saori Nagayoshi; Tomoya Kotani; Akihiro Urasaki; Yasuyuki Kishimoto; Masahiko Hibi; Koichi Kawakami
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-17       Impact factor: 11.205

4.  Optimized Gal4 genetics for permanent gene expression mapping in zebrafish.

Authors:  Martin Distel; Mario F Wullimann; Reinhard W Köster
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-23       Impact factor: 11.205

5.  Identification of functional domains and evolution of Tc1-like transposable elements.

Authors:  Z Ivics; Z Izsvak; A Minter; P B Hackett
Journal:  Proc Natl Acad Sci U S A       Date:  1996-05-14       Impact factor: 11.205

6.  The Drosophila brain revisited by enhancer detection.

Authors:  P L Han; V Meller; R L Davis
Journal:  J Neurobiol       Date:  1996-09

7.  Excision of the tol2 transposable element of the medaka fish, Oryzias latipes, in zebrafish, Danio rerio.

Authors:  K Kawakami; A Koga; H Hori; A Shima
Journal:  Gene       Date:  1998-12-28       Impact factor: 3.688

8.  Organization of hindbrain segments in the zebrafish embryo.

Authors:  B Trevarrow; D L Marks; C B Kimmel
Journal:  Neuron       Date:  1990-05       Impact factor: 17.173

9.  Use of the Gal4-UAS technique for targeted gene expression in the zebrafish.

Authors:  N Scheer; J A Campos-Ortega
Journal:  Mech Dev       Date:  1999-02       Impact factor: 1.882

10.  Stable lines of transgenic zebrafish exhibit reproducible patterns of transgene expression.

Authors:  G W Stuart; J R Vielkind; J V McMurray; M Westerfield
Journal:  Development       Date:  1990-07       Impact factor: 6.868

View more
  9 in total

1.  Proliferation, dispersal and patterned aggregation of iridophores in the skin prefigure striped colouration of zebrafish.

Authors:  Ajeet Pratap Singh; Ursula Schach; Christiane Nüsslein-Volhard
Journal:  Nat Cell Biol       Date:  2014-04-28       Impact factor: 28.824

2.  A Chemical Biology Approach to Model Pontocerebellar Hypoplasia Type 1B (PCH1B).

Authors:  Liberty François-Moutal; Shahriyar Jahanbakhsh; Andrew D L Nelson; Debashish Ray; David D Scott; Matthew R Hennefarth; Aubin Moutal; Samantha Perez-Miller; Andrew J Ambrose; Ahmed Al-Shamari; Philippe Coursodon; Bessie Meechoovet; Rebecca Reiman; Eric Lyons; Mark Beilstein; Eli Chapman; Quaid D Morris; Kendall Van Keuren-Jensen; Timothy R Hughes; Rajesh Khanna; Carla Koehler; Joanna Jen; Vijay Gokhale; May Khanna
Journal:  ACS Chem Biol       Date:  2018-09-06       Impact factor: 5.100

3.  Atomic structure of a toxic, oligomeric segment of SOD1 linked to amyotrophic lateral sclerosis (ALS).

Authors:  Smriti Sangwan; Anni Zhao; Katrina L Adams; Christina K Jayson; Michael R Sawaya; Elizabeth L Guenther; Albert C Pan; Jennifer Ngo; Destaye M Moore; Angela B Soriaga; Thanh D Do; Lukasz Goldschmidt; Rebecca Nelson; Michael T Bowers; Carla M Koehler; David E Shaw; Bennett G Novitch; David S Eisenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-31       Impact factor: 11.205

4.  Live imaging of endogenous protein dynamics in zebrafish using chromobodies.

Authors:  Paolo Panza; Julia Maier; Christian Schmees; Ulrich Rothbauer; Christian Söllner
Journal:  Development       Date:  2015-05-15       Impact factor: 6.868

5.  Iridophores and their interactions with other chromatophores are required for stripe formation in zebrafish.

Authors:  Hans Georg Frohnhöfer; Jana Krauss; Hans-Martin Maischein; Christiane Nüsslein-Volhard
Journal:  Development       Date:  2013-07       Impact factor: 6.868

6.  Gain-of-function mutations in Aqp3a influence zebrafish pigment pattern formation through the tissue environment.

Authors:  Anastasia Eskova; Francois Chauvigné; Hans-Martin Maischein; Moritz Ammelburg; Joan Cerdà; Christiane Nüsslein-Volhard; Uwe Irion
Journal:  Development       Date:  2017-05-15       Impact factor: 6.868

7.  Tight Junction Protein 1a regulates pigment cell organisation during zebrafish colour patterning.

Authors:  Andrey Fadeev; Jana Krauss; Hans Georg Frohnhöfer; Uwe Irion; Christiane Nüsslein-Volhard
Journal:  Elife       Date:  2015-04-27       Impact factor: 8.140

8.  Homotypic cell competition regulates proliferation and tiling of zebrafish pigment cells during colour pattern formation.

Authors:  Brigitte Walderich; Ajeet Pratap Singh; Prateek Mahalwar; Christiane Nüsslein-Volhard
Journal:  Nat Commun       Date:  2016-04-27       Impact factor: 14.919

9.  Countershading in zebrafish results from an Asip1 controlled dorsoventral gradient of pigment cell differentiation.

Authors:  Laura Cal; Paula Suarez-Bregua; Pilar Comesaña; Jennifer Owen; Ingo Braasch; Robert Kelsh; José Miguel Cerdá-Reverter; Josep Rotllant
Journal:  Sci Rep       Date:  2019-03-05       Impact factor: 4.379

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.