Literature DB >> 23459357

Solid-state tautomeric structure and invariom refinement of a novel and potent HIV integrase inhibitor.

John Bacsa1, Maurice Okello, Pankaj Singh, Vasu Nair.   

Abstract

The conformation and tautomeric structure of (Z)-4-[5-(2,6-difluorobenzyl)-1-(2-fluorobenzyl)-2-oxo-1,2-dihydropyridin-3-yl]-4-hydroxy-2-oxo-N-(2-oxopyrrolidin-1-yl)but-3-enamide, C27H22F3N3O5, in the solid state has been resolved by single-crystal X-ray crystallography. The electron distribution in the molecule was evaluated by refinements with invarioms, aspherical scattering factors by the method of Dittrich et al. [Acta Cryst. (2005), A61, 314-320] that are based on the Hansen-Coppens multipole model [Hansen & Coppens (1978). Acta Cryst. A34, 909-921]. The β-diketo portion of the molecule exists in the enol form. The enol -OH hydrogen forms a strong asymmetric hydrogen bond with the carbonyl O atom on the β-C atom of the chain. Weak intramolecular hydrogen bonds exist between the weakly acidic α-CH hydrogen of the keto-enol group and the pyridinone carbonyl O atom, and also between the hydrazine N-H group and the carbonyl group in the β-position from the hydrazine N-H group. The electrostatic properties of the molecule were derived from the molecular charge density. The molecule is in a lengthened conformation and the rings of the two benzyl groups are nearly orthogonal. Results from a high-field (1)H and (13)C NMR correlation spectroscopy study confirm that the same tautomer exists in solution as in the solid state.

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Year:  2013        PMID: 23459357      PMCID: PMC3589111          DOI: 10.1107/S0108270113003806

Source DB:  PubMed          Journal:  Acta Crystallogr C        ISSN: 0108-2701            Impact factor:   1.172


  14 in total

1.  HIV integrase inhibitors with nucleobase scaffolds: discovery of a highly potent anti-HIV agent.

Authors:  Vasu Nair; Guochen Chi; Roger Ptak; Nouri Neamati
Journal:  J Med Chem       Date:  2006-01-26       Impact factor: 7.446

2.  Introduction and validation of an invariom database for amino-acid, peptide and protein molecules.

Authors:  B Dittrich; C B Hübschle; P Luger; M A Spackman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-10-18

Review 3.  Integrase inhibitors to treat HIV/AIDS.

Authors:  Yves Pommier; Allison A Johnson; Christophe Marchand
Journal:  Nat Rev Drug Discov       Date:  2005-03       Impact factor: 84.694

4.  A non-natural dinucleotide containing an isomeric L-related deoxynucleoside: dinucleotide inhibitors of anti-HIV integrase activity.

Authors:  M Gary Newton; Charles F Campana; Guo Chen Chi; Doowon Lee; Zhi Jie Liu; Vasu Nair; James Phillips; John P Rose; B C Wang
Journal:  Acta Crystallogr C       Date:  2005-07-23       Impact factor: 1.172

5.  The invariom model and its application: refinement of D,L-serine at different temperatures and resolution.

Authors:  B Dittrich; C B Hübschle; M Messerschmidt; R Kalinowski; D Girnt; P Luger
Journal:  Acta Crystallogr A       Date:  2005-04-21       Impact factor: 2.290

6.  Crystal structures of novel allosteric peptide inhibitors of HIV integrase identify new interactions at the LEDGF binding site.

Authors:  David I Rhodes; Thomas S Peat; Nick Vandegraaff; Dharshini Jeevarajah; Janet Newman; John Martyn; Jonathan A V Coates; Nicholas J Ede; Philip Rea; John J Deadman
Journal:  Chembiochem       Date:  2011-08-17       Impact factor: 3.164

7.  Pharmacokinetics and safety of S/GSK1349572, a next-generation HIV integrase inhibitor, in healthy volunteers.

Authors:  Sherene Min; Ivy Song; Julie Borland; Shuguang Chen; Yu Lou; Tamio Fujiwara; Stephen C Piscitelli
Journal:  Antimicrob Agents Chemother       Date:  2009-11-02       Impact factor: 5.191

8.  Discovery of raltegravir, a potent, selective orally bioavailable HIV-integrase inhibitor for the treatment of HIV-AIDS infection.

Authors:  Vincenzo Summa; Alessia Petrocchi; Fabio Bonelli; Benedetta Crescenzi; Monica Donghi; Marco Ferrara; Fabrizio Fiore; Cristina Gardelli; Odalys Gonzalez Paz; Daria J Hazuda; Philip Jones; Olaf Kinzel; Ralph Laufer; Edith Monteagudo; Ester Muraglia; Emanuela Nizi; Federica Orvieto; Paola Pace; Giovanna Pescatore; Rita Scarpelli; Kara Stillmock; Marc V Witmer; Michael Rowley
Journal:  J Med Chem       Date:  2008-09-25       Impact factor: 7.446

Review 9.  Elvitegravir: a new HIV integrase inhibitor.

Authors:  Kazuya Shimura; Eiichi N Kodama
Journal:  Antivir Chem Chemother       Date:  2009-10-19

Review 10.  HIV integrase inhibitors as therapeutic agents in AIDS.

Authors:  Vasu Nair; Guochen Chi
Journal:  Rev Med Virol       Date:  2007 Jul-Aug       Impact factor: 6.989

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  1 in total

1.  Pharmacokinetics and dose-range finding toxicity of a novel anti-HIV active integrase inhibitor.

Authors:  Vasu Nair; Maurice Okello; Sanjay Mishra; Jon Mirsalis; Kathleen O'Loughlin; Yu Zhong
Journal:  Antiviral Res       Date:  2014-05-10       Impact factor: 5.970

  1 in total

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