Literature DB >> 23456710

Bhargavaea indica sp. nov., a member of the phylum Firmicutes, isolated from Arabian Sea sediment.

Pankaj Verma1, Chi Nam Seong, Prashant Kumar Pandey, Ramesh Ramchandra Bhonde, Cathrin Spröer, Manfred Rohde, Yogesh Shreepad Shouche.   

Abstract

A Gram-positive, aerobic, coccoid-rod shaped, non-motile, catalase- and oxidase-positive bacterium, designated strain KJW98(T), was isolated from the marine sediment of Karwar jetty, west coast of India. The strain was β-haemolytic, non-endospore-forming and grew with 0-8.5% (w/v) NaCl, at 15-48°C and at pH 6.5-9.0, with optimum growth with 0.5% (w/v) NaCl, at 42°C and at pH 7.0-8.0. Phylogenetic analyses based on 16S rRNA and gyrB gene sequences showed that strain KJW98(T) forms a lineage within the genus Bhargavaea. The G+C content of the genomic DNA was 55 mol%. The DNA-DNA relatedness values of strain KJW98(T) with B. beijingensis DSM 19037(T), B. cecembensis LMG 24411(T) and B. ginsengi DSM 19038(T) were 43.2, 39 and 26.5%, respectively. The major fatty acids were anteiso-C15:0 (37.7%), iso-C15:0 (19.7%), anteiso-C17:0 (17.0%) and iso-C16:0 (11.1%). The predominant menaquinone was MK-8 and the cell-wall peptidoglycan was of A4α type with L-lysine as the diagnostic diamino acid. The major polar lipids were diphosphatidylglycerol and phosphatidylglycerol. The phenotypic, genotypic and DNA-DNA relatedness data indicate that strain KJW98(T) should be distinguished from the members of the genus Bhargavaea, for which the name Bhargavaea indica sp. nov. is proposed with the type strain KJW98(T) (=KCTC 13583(T) =LMG 25219(T)).

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Year:  2013        PMID: 23456710     DOI: 10.1007/s12275-013-2488-z

Source DB:  PubMed          Journal:  J Microbiol        ISSN: 1225-8873            Impact factor:   3.422


  24 in total

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Journal:  J Comput Biol       Date:  2000 Feb-Apr       Impact factor: 1.479

2.  EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences.

Authors:  Jongsik Chun; Jae-Hak Lee; Yoonyoung Jung; Myungjin Kim; Seil Kim; Byung Kwon Kim; Young-Woon Lim
Journal:  Int J Syst Evol Microbiol       Date:  2007-10       Impact factor: 2.747

3.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Authors:  Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

4.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

Authors:  J D Thompson; T J Gibson; F Plewniak; F Jeanmougin; D G Higgins
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

5.  Studies on the spectrophotometric determination of DNA hybridization from renaturation rates.

Authors:  V A Huss; H Festl; K H Schleifer
Journal:  Syst Appl Microbiol       Date:  1983       Impact factor: 4.022

6.  Comparison of 16S ribosomal DNA sequences of all Xanthomonas species.

Authors:  L Hauben; L Vauterin; J Swings; E R Moore
Journal:  Int J Syst Bacteriol       Date:  1997-04

7.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

8.  The quantitative measurement of DNA hybridization from renaturation rates.

Authors:  J De Ley; H Cattoir; A Reynaerts
Journal:  Eur J Biochem       Date:  1970-01

9.  Reclassification of Bacillus beijingensis Qiu et al. 2009 and Bacillus ginsengi Qiu et al. 2009 as Bhargavaea beijingensis comb. nov. and Bhargavaea ginsengi comb. nov. and emended description of the genus Bhargavaea.

Authors:  Pankaj Verma; Prashant Kumar Pandey; Arvind Kumar Gupta; Chi Nam Seong; Seong Chan Park; Han Na Choe; Keun Sik Baik; Milind Shivaji Patole; Yogesh Shreepad Shouche
Journal:  Int J Syst Evol Microbiol       Date:  2011-12-09       Impact factor: 2.747

10.  Bhargavaea cecembensis gen. nov., sp. nov., isolated from the Chagos-Laccadive ridge system in the Indian Ocean.

Authors:  R Manorama; P K Pindi; G S N Reddy; S Shivaji
Journal:  Int J Syst Evol Microbiol       Date:  2009-07-22       Impact factor: 2.747

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  2 in total

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Authors:  Ahmed Olowo-Okere; Yakubu Kokori Enevene Ibrahim; Cheikh Ibrahima Lo; Busayo Olalekan Olayinka; Edmond Kuete Yimagou; Abdourahamane Yacouba; Yahaya Mohammed; Larbi Zakaria Nabti; Ayan Ali Ragueh; David Lupande; Didier Raoult; Jean-Marc Rolain; Seydina M Diene
Journal:  Curr Microbiol       Date:  2021-12-14       Impact factor: 2.188

2.  Characterization of antibiotic resistant and enzyme producing bacterial strains isolated from the Arabian Sea.

Authors:  Preeti N Tallur; Dayanand B Sajjan; Sikandar I Mulla; Manjunatha P Talwar; A Pragasam; Vinayak M Nayak; Harichandra Z Ninnekar; Shivanand S Bhat
Journal:  3 Biotech       Date:  2016-01-11       Impact factor: 2.406

  2 in total

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