Literature DB >> 23456601

Chromatin immunoprecipitation of adult murine cardiomyocytes.

P Bolli1, C Vardabasso, E Bernstein, H W Chaudhry.   

Abstract

This unit describes a streamlined two-step protocol for the isolation of adult murine cardiomyocytes with subsequent Chromatin ImmunoPrecipitation (ChIP). Isolation and culturing of cardiomyocytes is a delicate process and the protocol presented here optimizes the combination of cardiomyocyte isolation with ChIP. ChIP is an invaluable method for analyzing molecular interactions occurring between a specific protein (or its post-translationally modified form) and a region of genomic DNA. ChIP has become a widely used technique in the last decade since several groundbreaking studies have focused attention on epigenetics and have identified many epigenetic regulatory mechanisms. However, epigenetics within cardiovascular biology is a new area of focus for many investigators, and we have optimized a method for performing ChIP in adult murine cardiomyocytes, as we feel this will be an important aid to both the cardiovascular field and for the development of cell- and tissue-specific ChIP. Curr. Protoc. Cell Biol. 58:17.14.1-17.14.16.
© 2013 by John Wiley & Sons, Inc.

Entities:  

Mesh:

Year:  2013        PMID: 23456601      PMCID: PMC3645876          DOI: 10.1002/0471143030.cb1714s58

Source DB:  PubMed          Journal:  Curr Protoc Cell Biol        ISSN: 1934-2616


  22 in total

Review 1.  Growth factors, proto-oncogenes, and plasticity of the cardiac phenotype.

Authors:  T G Parker; M D Schneider
Journal:  Annu Rev Physiol       Date:  1991       Impact factor: 19.318

2.  Isolation and culture of adult mouse cardiac myocytes.

Authors:  Timothy D O'Connell; Manoj C Rodrigo; Paul C Simpson
Journal:  Methods Mol Biol       Date:  2007

Review 3.  The nucleosome: a little variation goes a long way.

Authors:  Emily Bernstein; Sandra B Hake
Journal:  Biochem Cell Biol       Date:  2006-08       Impact factor: 3.626

Review 4.  Epigenetics: a landscape takes shape.

Authors:  Aaron D Goldberg; C David Allis; Emily Bernstein
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

Review 5.  The state-of-the-art of chromatin immunoprecipitation.

Authors:  Philippe Collas
Journal:  Methods Mol Biol       Date:  2009

Review 6.  Arresting developments in the cardiac myocyte cell cycle: role of cyclin-dependent kinase inhibitors.

Authors:  G Brooks; R A Poolman; J M Li
Journal:  Cardiovasc Res       Date:  1998-08       Impact factor: 10.787

7.  Analysis of chromatin structure by in vivo formaldehyde cross-linking.

Authors:  V Orlando; H Strutt; R Paro
Journal:  Methods       Date:  1997-02       Impact factor: 3.608

8.  Jumonji, a nuclear protein that is necessary for normal heart development.

Authors:  Y Lee; A J Song; R Baker; B Micales; S J Conway; G E Lyons
Journal:  Circ Res       Date:  2000-05-12       Impact factor: 17.367

9.  Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage.

Authors:  Joseph A Wamstad; Jeffrey M Alexander; Rebecca M Truty; Avanti Shrikumar; Fugen Li; Kirsten E Eilertson; Huiming Ding; John N Wylie; Alexander R Pico; John A Capra; Genevieve Erwin; Steven J Kattman; Gordon M Keller; Deepak Srivastava; Stuart S Levine; Katherine S Pollard; Alisha K Holloway; Laurie A Boyer; Benoit G Bruneau
Journal:  Cell       Date:  2012-09-12       Impact factor: 41.582

10.  Formaldehyde-mediated DNA-protein crosslinking: a probe for in vivo chromatin structures.

Authors:  M J Solomon; A Varshavsky
Journal:  Proc Natl Acad Sci U S A       Date:  1985-10       Impact factor: 11.205

View more
  1 in total

1.  Differential Activation of P-TEFb Complexes in the Development of Cardiomyocyte Hypertrophy following Activation of Distinct G Protein-Coupled Receptors.

Authors:  Ryan D Martin; Yalin Sun; Sarah MacKinnon; Luca Cuccia; Viviane Pagé; Terence E Hébert; Jason C Tanny
Journal:  Mol Cell Biol       Date:  2020-06-29       Impact factor: 4.272

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.