Literature DB >> 23455350

Evaluating the assignment of alkB terminal restriction fragments and sequence types to distinct bacterial taxa.

Julia Giebler1, Lukas Y Wick, Michael Schloter, Hauke Harms, Antonis Chatzinotas.   

Abstract

Sequence and terminal restriction fragment length polymorphism (T-RFLP) analyses revealed multiple alkB gene copies/cell in soil bacterial isolates and an apparently high genetic mobility among various phylogenetic groups. Identifying alkane degraders by alkB terminal restriction fragments (T-RFs) and sequences is strongly biased, as the phylogenetic trees based on 16S rRNA and alkB gene sequences were highly inconsistent.

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Year:  2013        PMID： 23455350      PMCID： PMC3623158          DOI： 10.1128/AEM.04028-12

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  18 in total

1.  Novel phylogenetic assignment database for terminal-restriction fragment length polymorphism analysis of human colonic microbiota.

Authors:  Mitsuharu Matsumoto; Mitsuo Sakamoto; Hidenori Hayashi; Yoshimi Benno
Journal:  J Microbiol Methods       Date:  2005-01-11       Impact factor: 2.363

2.  A new method for the detection of alkane-monooxygenase homologous genes (alkB) in soils based on PCR-hybridization.

Authors:  Karin Kloos; Jean Charles Munch; Michael Schloter
Journal:  J Microbiol Methods       Date:  2006-03-07       Impact factor: 2.363

3.  New alk genes detected in Antarctic marine sediments.

Authors:  Emanuele Kuhn; Giovani Sebben Bellicanta; Vivian Helena Pellizari
Journal:  Environ Microbiol       Date:  2009-01-07       Impact factor: 5.491

4.  Molecular screening for alkane hydroxylase genes in Gram-negative and Gram-positive strains.

Authors:  T H Smits; M Röthlisberger; B Witholt; J B van Beilen
Journal:  Environ Microbiol       Date:  1999-08       Impact factor: 5.491

5.  Isolation of inc P-2 plasmid DNA from Pseudomonas aeruginosa.

Authors:  M Fennewald; W Prevatt; R Meyer; J Shapiro
Journal:  Plasmid       Date:  1978-02       Impact factor: 3.466

6.  Analysis of Pseudomonas putida alkane-degradation gene clusters and flanking insertion sequences: evolution and regulation of the alk genes.

Authors:  J B van Beilen; S Panke; S Lucchini; A G Franchini; M Röthlisberger; B Witholt
Journal:  Microbiology       Date:  2001-06       Impact factor: 2.777

7.  An alkane-responsive expression system for the production of fine chemicals

Authors: 
Journal:  Appl Environ Microbiol       Date:  1999-06       Impact factor: 4.792

8.  Assessing soil microbial populations responding to crude-oil amendment at different temperatures using phylogenetic, functional gene (alkB) and physiological analyses.

Authors:  Natsuko Hamamura; Manabu Fukui; David M Ward; William P Inskeep
Journal:  Environ Sci Technol       Date:  2008-10-15       Impact factor: 9.028

9.  Genetic regulation of octane dissimilation plasmid in Pseudomonas.

Authors:  A M Chakrabarty; G Chou; I C Gunsalus
Journal:  Proc Natl Acad Sci U S A       Date:  1973-04       Impact factor: 11.205

Review 10.  Degradation of alkanes by bacteria.

Authors:  Fernando Rojo
Journal:  Environ Microbiol       Date:  2009-10       Impact factor: 5.491
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  3 in total

1.  Microbial Toluene Removal in Hypoxic Model Constructed Wetlands Occurs Predominantly via the Ring Monooxygenation Pathway.

Authors:  P M Martínez-Lavanchy; Z Chen; V Lünsmann; V Marin-Cevada; R Vilchez-Vargas; D H Pieper; N Reiche; U Kappelmeyer; V Imparato; H Junca; I Nijenhuis; J A Müller; P Kuschk; H J Heipieper
Journal:  Appl Environ Microbiol       Date:  2015-07-06       Impact factor: 4.792

2.  Effects of different compost amendments on the abundance and composition of alkB harboring bacterial communities in a soil under industrial use contaminated with hydrocarbons.

Authors:  Stefanie Wallisch; Tjasa Gril; Xia Dong; Gerd Welzl; Christian Bruns; Ester Heath; Marion Engel; Marjetka Suhadolc; Michael Schloter
Journal:  Front Microbiol       Date:  2014-03-13       Impact factor: 5.640

3.  Diverse alkane hydroxylase genes in microorganisms and environments.

Authors:  Yong Nie; Chang-Qiao Chi; Hui Fang; Jie-Liang Liang; She-Lian Lu; Guo-Li Lai; Yue-Qin Tang; Xiao-Lei Wu
Journal:  Sci Rep       Date:  2014-05-15       Impact factor: 4.379
  3 in total

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