Literature DB >> 23454638

Systematic analysis of genomic organization and structure of long non-coding RNAs in the human genome.

Jie Sun1, Meng Zhou, Zhi-Tao Mao, Da-Peng Hao, Zhen-Zhen Wang, Chuan-Xing Li.   

Abstract

The genomic architecture of several functional elements in animals and plants, such as microRNAs and tRNA, has been better characterized. As yet, there is very little known about genomic organization and structure of lncRNA in animals and plants. Here, we conducted a genome-wide systematic computational analysis of genomic architecture of lncRNAs, and further provided a more comprehensive comparative view of genomic organization between lncRNAs and several other functional elements in the human genome. Our study not only provides comprehensive knowledge for further studies into the correlations between the genomic architecture of lncRNAs and their important functional roles in diverse cellular processes and in disease, but also will be valuable for understanding the origin and evolution of lncRNAs.
Copyright © 2013 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.

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Year:  2013        PMID: 23454638     DOI: 10.1016/j.febslet.2013.02.036

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  7 in total

1.  Expression profile of long non-coding RNAs is altered in endometrial cancer.

Authors:  Lin Yang; Jie Zhang; Anli Jiang; Qingwei Liu; Changzhong Li; Chunrun Yang; Jianjun Xiu
Journal:  Int J Clin Exp Med       Date:  2015-04-15

2.  Relationship between microRNA genes incidence and cancer-associated genomic regions in canine tumors: a comprehensive bioinformatics study.

Authors:  Mohamad Zamani-Ahmadmahmudi
Journal:  Funct Integr Genomics       Date:  2016-01-18       Impact factor: 3.410

3.  Transcriptome analysis reveals dysregulated long non-coding RNAs and mRNAs associated with extrahepatic cholangiocarcinoma progression.

Authors:  Fumin Zhang; Ming Wan; Yi Xu; Zhenglong Li; Pengcheng Kang; Xingming Jiang; Yimin Wang; Zhidong Wang; Xiangyu Zhong; Chunlong Li; Yunfu Cui
Journal:  Oncol Lett       Date:  2017-09-18       Impact factor: 2.967

4.  Relapse-related long non-coding RNA signature to improve prognosis prediction of lung adenocarcinoma.

Authors:  Meng Zhou; Wanying Xu; Xiaolong Yue; Hengqiang Zhao; Zhenzhen Wang; Hongbo Shi; Liang Cheng; Jie Sun
Journal:  Oncotarget       Date:  2016-05-17

5.  Identification of a Multi-Long Noncoding RNA Signature for the Diagnosis of Type 1 Diabetes Mellitus.

Authors:  Guannan Geng; Zicheng Zhang; Liang Cheng
Journal:  Front Bioeng Biotechnol       Date:  2020-07-03

6.  De novo assembly and transcriptome analysis of contrasting sugarcane varieties.

Authors:  Claudio Benicio Cardoso-Silva; Estela Araujo Costa; Melina Cristina Mancini; Thiago Willian Almeida Balsalobre; Lucas Eduardo Costa Canesin; Luciana Rossini Pinto; Monalisa Sampaio Carneiro; Antonio Augusto Franco Garcia; Anete Pereira de Souza; Renato Vicentini
Journal:  PLoS One       Date:  2014-02-11       Impact factor: 3.240

7.  Comparison of long non‑coding RNAs, microRNAs and messenger RNAs involved in initiation and progression of esophageal squamous cell carcinoma.

Authors:  Su-Qing Li; Feng Li; Yun Xiao; Chun-Mei Wang; Lei Tuo; Jing Hu; Xiao-Bin Yang; Jin-Song Wang; Wei-Hong Shi; Xia Li; Xiu-Feng Cao
Journal:  Mol Med Rep       Date:  2014-05-30       Impact factor: 2.952

  7 in total

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