Literature DB >> 23452846

Encoding and decoding cellular information through signaling dynamics.

Jeremy E Purvis1, Galit Lahav.   

Abstract

A growing number of studies are revealing that cells can send and receive information by controlling the temporal behavior (dynamics) of their signaling molecules. In this Review, we discuss what is known about the dynamics of various signaling networks and their role in controlling cellular responses. We identify general principles that are emerging in the field, focusing specifically on how the identity and quantity of a stimulus is encoded in temporal patterns, how signaling dynamics influence cellular outcomes, and how specific dynamical patterns are both shaped and interpreted by the structure of molecular networks. We conclude by discussing potential functional roles for transmitting cellular information through the dynamics of signaling molecules and possible applications for the treatment of disease.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23452846      PMCID: PMC3707615          DOI: 10.1016/j.cell.2013.02.005

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  70 in total

1.  Comment on "Oscillations in NF-kappaB signaling control the dynamics of gene expression".

Authors:  Derren Barken; Chiaochun Joanne Wang; Jeff Kearns; Raymond Cheong; Alexander Hoffmann; Andre Levchenko
Journal:  Science       Date:  2005-04-01       Impact factor: 47.728

2.  Dynamic proteomics of individual cancer cells in response to a drug.

Authors:  A A Cohen; N Geva-Zatorsky; E Eden; M Frenkel-Morgenstern; I Issaeva; A Sigal; R Milo; C Cohen-Saidon; Y Liron; Z Kam; L Cohen; T Danon; N Perzov; U Alon
Journal:  Science       Date:  2008-11-20       Impact factor: 47.728

3.  Calcium oscillations increase the efficiency and specificity of gene expression.

Authors:  R E Dolmetsch; K Xu; R S Lewis
Journal:  Nature       Date:  1998-04-30       Impact factor: 49.962

4.  Cell-permeant caged InsP3 ester shows that Ca2+ spike frequency can optimize gene expression.

Authors:  W Li; J Llopis; M Whitney; G Zlokarnik; R Y Tsien
Journal:  Nature       Date:  1998-04-30       Impact factor: 49.962

5.  Prediction and validation of the distinct dynamics of transient and sustained ERK activation.

Authors:  Satoru Sasagawa; Yu-ichi Ozaki; Kazuhiro Fujita; Shinya Kuroda
Journal:  Nat Cell Biol       Date:  2005-03-27       Impact factor: 28.824

6.  Encoding NF-kappaB temporal control in response to TNF: distinct roles for the negative regulators IkappaBalpha and A20.

Authors:  Shannon L Werner; Jeffrey D Kearns; Victoria Zadorozhnaya; Candace Lynch; Ellen O'Dea; Mark P Boldin; Averil Ma; David Baltimore; Alexander Hoffmann
Journal:  Genes Dev       Date:  2008-08-01       Impact factor: 11.361

7.  Function of C/EBPdelta in a regulatory circuit that discriminates between transient and persistent TLR4-induced signals.

Authors:  Vladimir Litvak; Stephen A Ramsey; Alistair G Rust; Daniel E Zak; Kathleen A Kennedy; Aaron E Lampano; Matti Nykter; Ilya Shmulevich; Alan Aderem
Journal:  Nat Immunol       Date:  2009-03-08       Impact factor: 25.606

8.  Frequency-modulated nuclear localization bursts coordinate gene regulation.

Authors:  Long Cai; Chiraj K Dalal; Michael B Elowitz
Journal:  Nature       Date:  2008-09-25       Impact factor: 49.962

9.  Dose-to-duration encoding and signaling beyond saturation in intracellular signaling networks.

Authors:  Marcelo Behar; Nan Hao; Henrik G Dohlman; Timothy C Elston
Journal:  PLoS Comput Biol       Date:  2008-10-10       Impact factor: 4.475

10.  Modeling a snap-action, variable-delay switch controlling extrinsic cell death.

Authors:  John G Albeck; John M Burke; Sabrina L Spencer; Douglas A Lauffenburger; Peter K Sorger
Journal:  PLoS Biol       Date:  2008-12-02       Impact factor: 8.029

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  302 in total

1.  High-throughput phosphoproteomics reveals in vivo insulin signaling dynamics.

Authors:  Sean J Humphrey; S Babak Azimifar; Matthias Mann
Journal:  Nat Biotechnol       Date:  2015-08-17       Impact factor: 54.908

Review 2.  Signal Transduction at the Single-Cell Level: Approaches to Study the Dynamic Nature of Signaling Networks.

Authors:  L Naomi Handly; Jason Yao; Roy Wollman
Journal:  J Mol Biol       Date:  2016-07-16       Impact factor: 5.469

3.  Coupled feedback loops control the stimulus-dependent dynamics of the yeast transcription factor Msn2.

Authors:  Yanfei Jiang; Zohreh AkhavanAghdam; Lev S Tsimring; Nan Hao
Journal:  J Biol Chem       Date:  2017-06-21       Impact factor: 5.157

4.  Dynamic secretome of bone marrow-derived stromal cells reveals a cardioprotective biochemical cocktail.

Authors:  David D Ellison; Yasir Suhail; Junaid Afzal; Laura Woo; Onur Kilic; Jeffrey Spees; Andre Levchenko
Journal:  Proc Natl Acad Sci U S A       Date:  2019-06-25       Impact factor: 11.205

5.  Live imaging of ERK signalling dynamics in differentiating mouse embryonic stem cells.

Authors:  Julia Deathridge; Vlatka Antolović; Maddy Parsons; Jonathan R Chubb
Journal:  Development       Date:  2019-06-03       Impact factor: 6.868

6.  Reciprocal encoding of signal intensity and duration in a glucose-sensing circuit.

Authors:  Yan Fu; Sungmin Lim; Daisuke Urano; Meral Tunc-Ozdemir; Nguyen G Phan; Timothy C Elston; Alan M Jones
Journal:  Cell       Date:  2014-02-27       Impact factor: 41.582

Review 7.  Single cell protein analysis for systems biology.

Authors:  Ezra Levy; Nikolai Slavov
Journal:  Essays Biochem       Date:  2018-10-26       Impact factor: 8.000

8.  Mapping signaling pathway cross-talk in Drosophila cells.

Authors:  Noemie Ammeux; Benjamin E Housden; Andrew Georgiadis; Yanhui Hu; Norbert Perrimon
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-15       Impact factor: 11.205

9.  Mathematical model identifies effective P53 accumulation with target gene binding affinity in DNA damage response for cell fate decision.

Authors:  Tingzhe Sun; Dan Mu; Jun Cui
Journal:  Cell Cycle       Date:  2018-12-10       Impact factor: 4.534

Review 10.  Two is better than one; toward a rational design of combinatorial therapy.

Authors:  Sheng-Hong Chen; Galit Lahav
Journal:  Curr Opin Struct Biol       Date:  2016-08-10       Impact factor: 6.809

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