Literature DB >> 23449554

Walking motion of an overdamped active particle in a ratchet potential.

Kong-Ju-Bock Lee1, Chul Koo Kim, Myung-Hoon Chung.   

Abstract

An active particle can convert its internal energy into mechanical work. We study a generalized energy-depot model of an overdamped active particle in a ratchet potential. Using well-known biological parameters for kinesin-1 and modeling ATP influx as a pulsed energy supply, we apply our model to the molecular motor system. We find that our simple model can capture the essential properties of the kinesin motor such as forward stepping, stalling, backward stepping, dependence on ATP concentration, and stall force. Our model might be quite universal in the sense that it is able to describe dynamics of various types of motors as long as realistic parameters for each motor species are adopted.

Entities:  

Keywords:  Active particle; Energy depot model; Kinesin

Year:  2011        PMID: 23449554      PMCID: PMC3326151          DOI: 10.1007/s10867-011-9249-1

Source DB:  PubMed          Journal:  J Biol Phys        ISSN: 0092-0606            Impact factor:   1.365


  41 in total

1.  Kinesin walks hand-over-hand.

Authors:  Ahmet Yildiz; Michio Tomishige; Ronald D Vale; Paul R Selvin
Journal:  Science       Date:  2003-12-18       Impact factor: 47.728

2.  Chemomechanical coupling of the forward and backward steps of single kinesin molecules.

Authors:  Masayoshi Nishiyama; Hideo Higuchi; Toshio Yanagida
Journal:  Nat Cell Biol       Date:  2002-10       Impact factor: 28.824

3.  The kinesin-like ncd protein of Drosophila is a minus end-directed microtubule motor.

Authors:  H B McDonald; R J Stewart; L S Goldstein
Journal:  Cell       Date:  1990-12-21       Impact factor: 41.582

4.  Collective behavior of antagonistically acting kinesin-1 motors.

Authors:  Cecile Leduc; Nenad Pavin; Frank Jülicher; Stefan Diez
Journal:  Phys Rev Lett       Date:  2010-09-17       Impact factor: 9.161

Review 5.  Kinesin's moonwalk.

Authors:  Nicholas J Carter; Robert A Cross
Journal:  Curr Opin Cell Biol       Date:  2005-12-19       Impact factor: 8.382

6.  Modeling vortex swarming in Daphnia.

Authors:  Robert Mach; Frank Schweitzer
Journal:  Bull Math Biol       Date:  2006-08-19       Impact factor: 1.758

7.  Bead movement by single kinesin molecules studied with optical tweezers.

Authors:  S M Block; L S Goldstein; B J Schnapp
Journal:  Nature       Date:  1990-11-22       Impact factor: 49.962

8.  Direct observation of kinesin stepping by optical trapping interferometry.

Authors:  K Svoboda; C F Schmidt; B J Schnapp; S M Block
Journal:  Nature       Date:  1993-10-21       Impact factor: 49.962

9.  Kinesin takes one 8-nm step for each ATP that it hydrolyzes.

Authors:  D L Coy; M Wagenbach; J Howard
Journal:  J Biol Chem       Date:  1999-02-05       Impact factor: 5.157

10.  Operation modes of the molecular motor kinesin.

Authors:  S Liepelt; R Lipowsky
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-01-22
View more
  2 in total

1.  Two-dimensional motion of Brownian swimmers in linear flows.

Authors:  Mario Sandoval; Alonso Jimenez
Journal:  J Biol Phys       Date:  2015-10-01       Impact factor: 1.365

2.  A modified active Brownian dynamics model using asymmetric energy conversion and its application to the molecular motor system.

Authors:  Pyeong Jun Park; Kong-Ju-Bock Lee
Journal:  J Biol Phys       Date:  2013-03-02       Impact factor: 1.365

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.