Literature DB >> 23449003

A first course in computing with applications to biology.

Ran Libeskind-Hadas1, Eliot Bush.   

Abstract

We believe that undergraduate biology students must acquire a foundational background in computing including how to formulate a computational problem; develop an algorithmic solution; implement their solution in software and then test, document and use their code to explore biological phenomena. Moreover, by learning these skills in the first year, students acquire a powerful tool set that they can use and build on throughout their studies. To address this need, we have developed a first-year undergraduate course that teaches students the foundations of computational thinking and programming in the context of problems in biology. This article describes the structure and content of the course and summarizes assessment data on both affective and learning outcomes.

Keywords:  bioinformatics; computational biology; education

Mesh:

Year:  2013        PMID: 23449003     DOI: 10.1093/bib/bbt005

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  6 in total

1.  Computational thinking in life science education.

Authors:  Amir Rubinstein; Benny Chor
Journal:  PLoS Comput Biol       Date:  2014-11-20       Impact factor: 4.475

2.  The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers.

Authors:  Manuel Corpas; Rafael C Jimenez; Erik Bongcam-Rudloff; Aidan Budd; Michelle D Brazas; Pedro L Fernandes; Bruno Gaeta; Celia van Gelder; Eija Korpelainen; Fran Lewitter; Annette McGrath; Daniel MacLean; Patricia M Palagi; Kristian Rother; Jan Taylor; Allegra Via; Mick Watson; Maria Victoria Schneider; Teresa K Attwood
Journal:  Bioinformatics       Date:  2014-09-04       Impact factor: 6.937

3.  Teaching bioinformatics in concert.

Authors:  Anya L Goodman; Alex Dekhtyar
Journal:  PLoS Comput Biol       Date:  2014-11-20       Impact factor: 4.475

4.  The Mastery Rubric for Bioinformatics: A tool to support design and evaluation of career-spanning education and training.

Authors:  Rochelle E Tractenberg; Jessica M Lindvall; Teresa K Attwood; Allegra Via
Journal:  PLoS One       Date:  2019-11-26       Impact factor: 3.240

5.  A CURE for a Major Challenge in Phenomics: A Practical Guide to Implementing a Quantitative Specimen-Based Undergraduate Research Experience.

Authors:  S A Price; O Larouche; S T Friedman; K A Corn; P C Wainwright; C M Martinez
Journal:  Integr Org Biol       Date:  2020-02-20

6.  Introducing R as a smart version of calculators enables beginners to explore it on their own.

Authors:  Krishna Choudhary; Alexander R Pico
Journal:  F1000Res       Date:  2021-08-26
  6 in total

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