Literature DB >> 23447634

Comparative evaluation of conventional and real-time PCR assays for detecting Bacteroides fragilis in clinical samples.

Joseph Papaparaskevas1, Victoria Mela, Dimitra P Houhoula, Angeliki Pantazatou, Georgios L Petrikkos, Athanassios Tsakris.   

Abstract

A conventional PCR and a real-time PCR for detecting Bacteroides fragilis were evaluated against clinical specimens. Analytical sensitivities were 100 and 40 fg of DNA, respectively. Detection limits were 100 and 10 CFU/ml, respectively. A total of six culture-negative specimens were positive by PCR. Altering the gold standard from "positive culture" to "positive culture or both PCR assays positive" resulted in sensitivities of 91.7% and 100%, respectively, and in specificities of 100% and 98.6%, respectively.

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Year:  2013        PMID: 23447634      PMCID: PMC3647933          DOI: 10.1128/JCM.00449-13

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  14 in total

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Journal:  Anaerobe       Date:  2010-08-13       Impact factor: 3.331

2.  Evaluation of new gyrB-based real-time PCR system for the detection of B. fragilis as an indicator of human-specific fecal contamination.

Authors:  Chang Soo Lee; Jiyoung Lee
Journal:  J Microbiol Methods       Date:  2010-07-17       Impact factor: 2.363

3.  A novel genetic marker for the rapid detection of Bacteroides fragilis in recreational water as a human-specific faecal indicator.

Authors:  Chang Soo Lee; Jason W Marion; Jiyoung Lee
Journal:  J Water Health       Date:  2011-06       Impact factor: 1.744

4.  Prevalence of enterotoxigenic Bacteroides fragilis in adult patients with diarrhea and healthy controls.

Authors:  G Zhang; B Svenungsson; A Kärnell; A Weintraub
Journal:  Clin Infect Dis       Date:  1999-09       Impact factor: 9.079

Review 5.  Virulence factors in anaerobes.

Authors:  B I Duerden
Journal:  Clin Infect Dis       Date:  1994-05       Impact factor: 9.079

6.  Quantitative detection of enterotoxigenic Bacteroides fragilis subtypes isolated from children with and without diarrhea.

Authors:  V R C Merino; V Nakano; C Liu; Y Song; S M Finegold; M J Avila-Campos
Journal:  J Clin Microbiol       Date:  2010-10-27       Impact factor: 5.948

7.  Application of quantitative real-time PCR for rapid identification of Bacteroides fragilis group and related organisms in human wound samples.

Authors:  Jia Tong; Chengxu Liu; Paula Summanen; Huaxi Xu; Sydney M Finegold
Journal:  Anaerobe       Date:  2011-03-23       Impact factor: 3.331

8.  Improved real-time PCR assays for the detection of fecal indicator bacteria in surface waters with different instrument and reagent systems.

Authors:  S Siefring; M Varma; E Atikovic; L Wymer; R A Haugland
Journal:  J Water Health       Date:  2008-06       Impact factor: 1.744

9.  Molecular cloning of the leuB gene from Bacteroides fragilis by functional complementation in Escherichia coli.

Authors:  M R Sarker; S Akimoto; T Ono; T Kinouchi; Y Ohnishi
Journal:  Microbiol Immunol       Date:  1995       Impact factor: 1.955

10.  Visualization of ribosomal RNA operon copy number distribution.

Authors:  Rajat Rastogi; Martin Wu; Indrani Dasgupta; George E Fox
Journal:  BMC Microbiol       Date:  2009-09-25       Impact factor: 3.605

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  4 in total

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Journal:  Hum Gene Ther       Date:  2022-03       Impact factor: 5.695

2.  Isolation, Detection, and Characterization of Enterotoxigenic Bacteroides fragilis in Clinical Samples.

Authors:  Payam Fathi; Shaoguang Wu
Journal:  Open Microbiol J       Date:  2016-04-14

3.  Simultaneous Supplementation of Bacillus subtilis and Antibiotic Growth Promoters by Stages Improved Intestinal Function of Pullets by Altering Gut Microbiota.

Authors:  Xueyuan Li; Shengru Wu; Xinyi Li; Tao Yan; Yongle Duan; Xin Yang; Yulan Duan; Qingzhu Sun; Xiaojun Yang
Journal:  Front Microbiol       Date:  2018-10-12       Impact factor: 5.640

4.  Development of a Multiplex PCR Platform for the Rapid Detection of Bacteria, Antibiotic Resistance, and Candida in Human Blood Samples.

Authors:  Flora Marzia Liotti; Brunella Posteraro; Franca Mannu; Franco Carta; Antonella Pantaleo; Giulia De Angelis; Giulia Menchinelli; Teresa Spanu; Pier Luigi Fiori; Francesco Turrini; Maurizio Sanguinetti
Journal:  Front Cell Infect Microbiol       Date:  2019-11-13       Impact factor: 5.293

  4 in total

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