| Literature DB >> 23439551 |
Hua-Dong Yin1, Yan Wang, Zhi-Chao Zhang, Yi-Ping Liu, Shi-Yi Chen, Qing Zhu.
Abstract
In this study, we cloned the coding sequence of chicken CRBP IV, quantified the mRNA expression in Erlang Mountainous Chickens, and investigated a polymorphism in this gene and its association with egg production traits among 349 individuals. The cloned fragment contained a 384 bp open reading frame, which encoded a predicted protein of 127 amino acids and was highly conserved among species. Expression of CRBP IV mRNA was detected in all eight tissues (small intestine, heart, liver, kidney, oviduct, ovary, pituitary, and hypothalamus) at different ages (12, 24, 32 and 45 w). High expression was found in small intestine, pituitary, kidney and liver, whereas it was low in the heart (p < 0.05). The CRBP IV mRNA levels changed with age in the various tissues, and were highly expressed in all tissues at 32 w, except for the heart. We identified one nucleotide substitution (c. 826T>C) in the second exon, which caused an amino acid change (p. S49L). Genotypes (TT, TC and CC) had significant effects on the age at first egg (AFE), total eggs for 300 days (TE300) and highest continuous laying days (HCLD). The CC genotype would be genetically advantageous to improve egg production traits due to earlier AFE, more TE300, and longer HCLD.Entities:
Year: 2013 PMID: 23439551 PMCID: PMC3634468 DOI: 10.3390/ijms14034432
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Comparison of the amino acid sequence of Erlang mountainous chicken CRBP IV with other vertebrates.
| Species | GenBank accession number | Amino acid Identity |
|---|---|---|
| XP_417606.2 | 98.4% (125/127) | |
| NP_001138694.1 | 74.8% (95/127) | |
| NP_071303.1 | 72.4% (92/127) | |
| NP_001102163 | 71.7% (91/127) | |
| NP_443192.1 | 70.9% (90/127) | |
| XP_001161299.1 | 70.9% (90/127) | |
| XP_871364.3 | 66.9% (85/127) | |
| XP_536740.1 | 57.5% (73/127) |
% indicates amino acid sequence identity of others species to the Erlang mountainous chicken CRBP IV sequence.
Figure 1Phylogenetic tree constructed using Neighbor-joining method based on CRBP IV amino acid sequence from different species. Bootstrap support values based on 1000 replicates. SD = Erlang mountainous chicken.
Figure 2Ontogenic expression of the CRBP IV mRNA in different tissues collected from line SD02 and SD03 at different ages. W = weeks.
Figure 3The relative mRNA of the CRBP IV gene in tissues collected from lines SD02 and SD03 at 32 weeks Different lowercase letters above the bars indicate significant differences (p < 0.05) within a line.
Figure 4Electrophoregrams of the polymorphic patterns for c. 826T>C. The three genotypes of CC, TC, and TT were marked in lanes, respectively.
Genotypic and allelic frequencies at polymorphic site of CRBP IV gene among different lines.
| Lines | Alleles frequency | Genotypes frequency | ||||||
|---|---|---|---|---|---|---|---|---|
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| T | C | TT | TC | CC | ||||
| SD02 | 188 | 0.641 | 0.359 | 0.399 | 0.484 | 0.117 | 0.471 | 0.354 |
| SD03 | 161 | 0.630 | 0.370 | 0.373 | 0.515 | 0.112 | 0.182 | 0.357 |
| Total | 349 | 0.636 | 0.364 | 0.386 | 0.499 | 0.115 | 0.091 | 0.356 |
The test of Hardy-Weinberg Equilibrium. p < 0.05 indicates a significant deviation from Hardy-Weinberg Equilibrium.
PIC = polymorphism information content.
Least square mean egg production traits, by genotype and lines of chicken CRBP IV gene.
| Items | Traits | |||||||
|---|---|---|---|---|---|---|---|---|
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| AFE | BWFE | FEW | TE300 | HCLD | ALI | |||
| Genotypes | CC | 40 | 169.3 ± 10.0 b | 1981.5 ± 296.5 | 40.4 ± 4.9 | 85.6 ± 20.4 a,A | 9.7 ± 3.8 a | 1.8 ± 1.2 |
| TC | 174 | 175.1 ± 11.2 a | 1892.1 ± 244.5 | 39.9 ± 5.8 | 81.1 ± 16.9 b,A,B | 7.8 ± 3.6 b | 1.6 ± 0.7 | |
| TT | 135 | 176.5 ± 11.5 a | 1898.0 ± 247.9 | 40.5 ± 6.8 | 77.9 ± 18.2 c,B | 7.2 ± 3.2 b | 1.7 ± 0.8 | |
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| Lines | SD02 | 188 | 169.8 ± 10.2 b | 1903.0 ± 241.2 | 40.2 ± 6.6 | 83.3 ± 18.4 | 7.7 ± 4.0 | 1.6 ± 0.9 |
| SD03 | 161 | 176.8 ± 10.9 a | 1919.5 ± 250.2 | 41.3 ± 5.3 | 81.3 ± 17.3 | 7.8 ± 4.5 | 1.5 ± 0.8 | |
Values are shown as the least squares means ± standard error. Mean values marked by different letters within columns differ significantly (p < 0.05, lowercase letters a,b,c) or highly significantly (p < 0.01, uppercase letters A,B). AFE = age at first egg, BWFE = body weight at first egg, FEW = first egg weight, TE300 = total eggs for 300 days, HCLD = highest continuous laying days and ALI = average laying interval.
Primer pairs were used in this study.
| Primers | Primer Sequence (5′→3′) | Annealing Temperature (°C) | Product Length (bp) | Amplified Region |
|---|---|---|---|---|
| Primer pairs for measuring cloning and sequencing chicken CRBP IV gene | ||||
| TGACTGTAACTCCTTCCCACAGTCT | 56 | 464 | 3–466 | |
| GAAGACAGCTTGCACCTTATGAC | ||||
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| Primer pairs for measuring chicken CRBP IV gene expression | ||||
| CATACCACAAGCACATTCAGAGA | 58 | 125 | 1320–1444 | |
| AGTTTGTCATTGTCCCAGGTAAC | ||||
| GAGAAATTGTGCGTGACATCA | 60 | 152 | 685–836 | |
| CCTGAACCTCTCATTGCCA | ||||
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| Primer pairs for screening chicken CRBP IV gene polymorphisms | ||||
| P1-F | CTTCCCACAGTCTAGCAA | 56.6 | 236 | 3380706–3380919 |
| P1-R | ATCAGCTAACAAATATCCTTC | |||
| P2-F | TTCTTCTGTCAAAGGTATTG | 55.2 | 244 | 3381431–3381654 |
| P2-R | CTTCCTTCTGTAAGAACACAT | |||
| P3-F | CAGAGCCTGGTTACCTG | 56.6 | 180 | 3381893–3382052 |
| P3-R | AGCTTGCACCTTATGACTACA | |||