Literature DB >> 23437917

The precision of the hominid timescale estimated by relaxed clock methods.

C G Schrago1, C M Voloch.   

Abstract

The chronological scenario of the evolution of hominoid primates has been thoroughly investigated since the advent of the molecular clock hypothesis. With the availability of genomic sequences for all hominid genera and other anthropoids, we may have reached the point at which the information from sequence data alone will not provide further evidence for the inference of the hominid evolution timescale. To verify this conjecture, we have compiled a genomic data set for all of the anthropoid genera. Our estimate places the Homo/Pan divergence at approximately 7.4 Ma, the Gorilla lineage divergence at approximately 9.7 Ma, the basal Hominidae divergence at 18.1 Ma and the basal Hominoidea divergence at 20.6 Ma. By inferring the theoretical limit distribution of posterior densities under a Bayesian framework, we show that it is unlikely that lengthier alignments or the availability of new genomic sequences will provide additional information to reduce the uncertainty associated with the divergence time estimates of the four hominid genera. A reduction of this uncertainty will be achieved only by the inclusion of more informative calibration priors.
© 2013 The Authors. Journal of Evolutionary Biology © 2013 European Society For Evolutionary Biology.

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Year:  2013        PMID: 23437917     DOI: 10.1111/jeb.12076

Source DB:  PubMed          Journal:  J Evol Biol        ISSN: 1010-061X            Impact factor:   2.411


  6 in total

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3.  Multispecies coalescent analysis of the early diversification of neotropical primates: phylogenetic inference under strong gene trees/species tree conflict.

Authors:  Carlos G Schrago; Albert N Menezes; Carolina Furtado; Cibele R Bonvicino; Hector N Seuanez
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4.  Evaluating Chromatin Accessibility Differences Across Multiple Primate Species Using a Joint Modeling Approach.

Authors:  Lee E Edsall; Alejandro Berrio; William H Majoros; Devjanee Swain-Lenz; Shauna Morrow; Yoichiro Shibata; Alexias Safi; Gregory A Wray; Gregory E Crawford; Andrew S Allen
Journal:  Genome Biol Evol       Date:  2019-10-01       Impact factor: 3.416

5.  Massively parallel discovery of human-specific substitutions that alter enhancer activity.

Authors:  Severin Uebbing; Jake Gockley; Steven K Reilly; Acadia A Kocher; Evan Geller; Neeru Gandotra; Curt Scharfe; Justin Cotney; James P Noonan
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-12       Impact factor: 11.205

6.  Sulcal morphology of ventral temporal cortex is shared between humans and other hominoids.

Authors:  Jacob A Miller; Willa I Voorhies; Xiang Li; Ishana Raghuram; Nicola Palomero-Gallagher; Karl Zilles; Chet C Sherwood; William D Hopkins; Kevin S Weiner
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  6 in total

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