Literature DB >> 23436808

Keeping track of worm trackers.

Steven J Husson1, Wagner Steuer Costa, Cornelia Schmitt, Alexander Gottschalk.   

Abstract

C. elegans is used extensively as a model system in the neurosciences due to its well defined nervous system. However, the seeming simplicity of this nervous system in anatomical structure and neuronal connectivity, at least compared to higher animals, underlies a rich diversity of behaviors. The usefulness of the worm in genome-wide mutagenesis or RNAi screens, where thousands of strains are assessed for phenotype, emphasizes the need for computational methods for automated parameterization of generated behaviors. In addition, behaviors can be modulated upon external cues like temperature, O(subscript)2(/subscript) and CO(subscript)2(/subscript) concentrations, mechanosensory and chemosensory inputs. Different machine vision tools have been developed to aid researchers in their efforts to inventory and characterize defined behavioral "outputs". Here we aim at providing an overview of different worm-tracking packages or video analysis tools designed to quantify different aspects of locomotion such as the occurrence of directional changes (turns, omega bends), curvature of the sinusoidal shape (amplitude, body bend angles) and velocity (speed, backward or forward movement).

Entities:  

Mesh:

Year:  2013        PMID: 23436808      PMCID: PMC4781246          DOI: 10.1895/wormbook.1.156.1

Source DB:  PubMed          Journal:  WormBook        ISSN: 1551-8507


  41 in total

1.  Optimization of wrMTrck to monitor Drosophila larval locomotor activity.

Authors:  David S Brooks; Kumar Vishal; Jessica Kawakami; Samuel Bouyain; Erika R Geisbrecht
Journal:  J Insect Physiol       Date:  2016-07-16       Impact factor: 2.354

2.  An Assay for Measuring the Effects of Ethanol on the Locomotion Speed of Caenorhabditis elegans.

Authors:  Andrew G Davies; GinaMari G Blackwell; Richard C Raabe; Jill C Bettinger
Journal:  J Vis Exp       Date:  2015-04-09       Impact factor: 1.355

3.  A perspective on optical developments in microfluidic platforms for Caenorhabditis elegans research.

Authors:  Guillaume Aubry; Hang Lu
Journal:  Biomicrofluidics       Date:  2014-02-13       Impact factor: 2.800

4.  Quantitative imaging of sleep behavior in Caenorhabditis elegans and larval Drosophila melanogaster.

Authors:  Matthew A Churgin; Milan Szuperak; Kristen C Davis; David M Raizen; Christopher Fang-Yen; Matthew S Kayser
Journal:  Nat Protoc       Date:  2019-04-05       Impact factor: 13.491

5.  A natural product inhibits the initiation of α-synuclein aggregation and suppresses its toxicity.

Authors:  Michele Perni; Céline Galvagnion; Alexander Maltsev; Georg Meisl; Martin B D Müller; Pavan K Challa; Julius B Kirkegaard; Patrick Flagmeier; Samuel I A Cohen; Roberta Cascella; Serene W Chen; Ryan Limbocker; Pietro Sormanni; Gabriella T Heller; Francesco A Aprile; Nunilo Cremades; Cristina Cecchi; Fabrizio Chiti; Ellen A A Nollen; Tuomas P J Knowles; Michele Vendruscolo; Adriaan Bax; Michael Zasloff; Christopher M Dobson
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-17       Impact factor: 11.205

Review 6.  Mainstreaming Caenorhabditis elegans in experimental evolution.

Authors:  Jeremy C Gray; Asher D Cutter
Journal:  Proc Biol Sci       Date:  2014-01-15       Impact factor: 5.349

7.  Multi-well imaging of development and behavior in Caenorhabditis elegans.

Authors:  Chih-Chieh Jay Yu; David M Raizen; Christopher Fang-Yen
Journal:  J Neurosci Methods       Date:  2013-12-07       Impact factor: 2.390

8.  Chemosensory signal transduction in Caenorhabditis elegans.

Authors:  Denise M Ferkey; Piali Sengupta; Noelle D L'Etoile
Journal:  Genetics       Date:  2021-03-31       Impact factor: 4.562

9.  Long-term imaging of circadian locomotor rhythms of a freely crawling C. elegans population.

Authors:  Ari Winbush; Matthew Gruner; Grant W Hennig; Alexander M van der Linden
Journal:  J Neurosci Methods       Date:  2015-04-22       Impact factor: 2.390

10.  NemaCount: quantification of nematode chemotaxis behavior in a browser.

Authors:  Damien M O'Halloran
Journal:  Invert Neurosci       Date:  2016-05-21
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