Literature DB >> 23434406

Kinetic, energetic, and mechanical differences between dark-state rhodopsin and opsin.

Shiho Kawamura1, Moritz Gerstung, Alejandro T Colozo, Jonne Helenius, Akiko Maeda, Niko Beerenwinkel, Paul S-H Park, Daniel J Müller.   

Abstract

Rhodopsin, the photoreceptor pigment of the retina, initiates vision upon photon capture by its covalently linked chromophore 11-cis-retinal. In the absence of light, the chromophore serves as an inverse agonist locking the receptor in the inactive dark state. In the absence of chromophore, the apoprotein opsin shows low-level constitutive activity. Toward revealing insight into receptor properties controlled by the chromophore, we applied dynamic single-molecule force spectroscopy to quantify the kinetic, energetic, and mechanical differences between dark-state rhodopsin and opsin in native membranes from the retina of mice. Both rhodopsin and opsin are stabilized by ten structural segments. Compared to dark-state rhodopsin, the structural segments stabilizing opsin showed higher interaction strengths and mechanical rigidities and lower conformational variabilities, lifetimes, and free energies. These changes outline a common mechanism toward activating G-protein-coupled receptors. Additionally, we detected that opsin was more pliable and frequently stabilized alternate structural intermediates.
Copyright © 2013 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23434406      PMCID: PMC3806332          DOI: 10.1016/j.str.2013.01.011

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  46 in total

1.  Unfolding pathways of individual bacteriorhodopsins.

Authors:  F Oesterhelt; D Oesterhelt; M Pfeiffer; A Engel; H E Gaub; D J Müller
Journal:  Science       Date:  2000-04-07       Impact factor: 47.728

2.  Probing origins of molecular interactions stabilizing the membrane proteins halorhodopsin and bacteriorhodopsin.

Authors:  David A Cisneros; Dieter Oesterhelt; Daniel J Müller
Journal:  Structure       Date:  2005-02       Impact factor: 5.006

3.  Locating ligand binding and activation of a single antiporter.

Authors:  Alexej Kedrov; Michael Krieg; Christine Ziegler; Werner Kuhlbrandt; Daniel J Muller
Journal:  EMBO Rep       Date:  2005-07       Impact factor: 8.807

4.  A comparison of the efficiency of G protein activation by ligand-free and light-activated forms of rhodopsin.

Authors:  T J Melia; C W Cowan; J K Angleson; T G Wensel
Journal:  Biophys J       Date:  1997-12       Impact factor: 4.033

5.  Dynamic strength of molecular adhesion bonds.

Authors:  E Evans; K Ritchie
Journal:  Biophys J       Date:  1997-04       Impact factor: 4.033

6.  Reversible unfolding of individual titin immunoglobulin domains by AFM.

Authors:  M Rief; M Gautel; F Oesterhelt; J M Fernandez; H E Gaub
Journal:  Science       Date:  1997-05-16       Impact factor: 47.728

7.  Mechanically induced titin kinase activation studied by force-probe molecular dynamics simulations.

Authors:  Frauke Gräter; Jianhua Shen; Hualiang Jiang; Mathias Gautel; Helmut Grubmüller
Journal:  Biophys J       Date:  2004-11-05       Impact factor: 4.033

8.  Cis-trans isomers of vitamin A and retinene in the rhodopsin system.

Authors:  R HUBBARD; G WALD
Journal:  J Gen Physiol       Date:  1952-11       Impact factor: 4.086

9.  Rpe65 is necessary for production of 11-cis-vitamin A in the retinal visual cycle.

Authors:  T M Redmond; S Yu; E Lee; D Bok; D Hamasaki; N Chen; P Goletz; J X Ma; R K Crouch; K Pfeifer
Journal:  Nat Genet       Date:  1998-12       Impact factor: 38.330

10.  Detecting molecular interactions that stabilize native bovine rhodopsin.

Authors:  K Tanuj Sapra; Paul S-H Park; Slawomir Filipek; Andreas Engel; Daniel J Müller; Krzysztof Palczewski
Journal:  J Mol Biol       Date:  2006-02-20       Impact factor: 5.469

View more
  28 in total

Review 1.  Structural approaches to understanding retinal proteins needed for vision.

Authors:  Tivadar Orban; Beata Jastrzebska; Krzysztof Palczewski
Journal:  Curr Opin Cell Biol       Date:  2013-11-28       Impact factor: 8.382

2.  Effect of dietary docosahexaenoic acid on rhodopsin content and packing in photoreceptor cell membranes.

Authors:  Subhadip Senapati; Megan Gragg; Ivy S Samuels; Vipul M Parmar; Akiko Maeda; Paul S-H Park
Journal:  Biochim Biophys Acta Biomembr       Date:  2018-04-04       Impact factor: 3.747

Review 3.  Advances in receptor conformation research: the quest for functionally selective conformations focusing on the β2-adrenoceptor.

Authors:  Anthony Yiu-Ho Woo; Ying Song; Weizhong Zhu; Rui-Ping Xiao
Journal:  Br J Pharmacol       Date:  2015-02-27       Impact factor: 8.739

4.  Identifying sequential substrate binding at the single-molecule level by enzyme mechanical stabilization.

Authors:  Jaime Andrés Rivas-Pardo; Jorge Alegre-Cebollada; César A Ramírez-Sarmiento; Julio M Fernandez; Victoria Guixé
Journal:  ACS Nano       Date:  2015-04-13       Impact factor: 15.881

5.  Effect of material flexibility on the thermodynamics and kinetics of hydrophobically induced evaporation of water.

Authors:  Y Elia Altabet; Amir Haji-Akbari; Pablo G Debenedetti
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-13       Impact factor: 11.205

6.  Fodis: Software for Protein Unfolding Analysis.

Authors:  Nicola Galvanetto; Andrea Perissinotto; Andrea Pedroni; Vincent Torre
Journal:  Biophys J       Date:  2018-03-27       Impact factor: 4.033

Review 7.  Constitutively active rhodopsin and retinal disease.

Authors:  Paul Shin-Hyun Park
Journal:  Adv Pharmacol       Date:  2014

8.  Apo-Opsin Exists in Equilibrium Between a Predominant Inactive and a Rare Highly Active State.

Authors:  Shinya Sato; Beata Jastrzebska; Andreas Engel; Krzysztof Palczewski; Vladimir J Kefalov
Journal:  J Neurosci       Date:  2018-11-20       Impact factor: 6.167

9.  Quasi-elastic Neutron Scattering Reveals Ligand-Induced Protein Dynamics of a G-Protein-Coupled Receptor.

Authors:  Utsab R Shrestha; Suchithranga M D C Perera; Debsindhu Bhowmik; Udeep Chawla; Eugene Mamontov; Michael F Brown; Xiang-Qiang Chu
Journal:  J Phys Chem Lett       Date:  2016-10-04       Impact factor: 6.475

Review 10.  Atomic force microscopy: a multifaceted tool to study membrane proteins and their interactions with ligands.

Authors:  Allison M Whited; Paul S-H Park
Journal:  Biochim Biophys Acta       Date:  2013-04-16
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.