Literature DB >> 23433320

Advancing nematode barcoding: a primer cocktail for the cytochrome c oxidase subunit I gene from vertebrate parasitic nematodes.

Sean W J Prosser1, Maria G Velarde-Aguilar, Virginia León-Règagnon, Paul D N Hebert.   

Abstract

Although nematodes are one of the most diverse metazoan phyla, species identification through morphology is difficult. Several genetic markers have been used for their identification, but most do not provide species-level resolution in all groups, and those that do lack primer sets effective across the phylum, precluding high-throughput processing. This study describes a cocktail of three novel primer pairs that overcome this limitation by recovering cytochrome c oxidase I (COI) barcodes from diverse nematode lineages parasitic on vertebrates, including members of three orders and eight families. Its effectiveness across a broad range of nematodes enables high-throughput processing.
© 2013 John Wiley & Sons Ltd.

Entities:  

Keywords:  barcoding; identification; nematodes; primers

Mesh:

Substances:

Year:  2013        PMID: 23433320     DOI: 10.1111/1755-0998.12082

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  21 in total

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Journal:  Parasitol Res       Date:  2015-11-20       Impact factor: 2.289

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Authors:  M Heddergott; F Müller; A C Frantz
Journal:  Parasitol Res       Date:  2015-02-15       Impact factor: 2.289

3.  Molecular identification of Physaloptera sp. from wild northern bobwhite (Colinus virginianus) in the Rolling Plains ecoregion of Texas.

Authors:  Aravindan Kalyanasundaram; Cassandra Henry; Matthew Z Brym; Ronald J Kendall
Journal:  Parasitol Res       Date:  2018-07-07       Impact factor: 2.289

4.  Sera of Peruvians with fever of unknown origins include viral nucleic acids from non-vertebrate hosts.

Authors:  Tung Gia Phan; Juana Del Valle Mendoza; Mohammadreza Sadeghi; Eda Altan; Xutao Deng; Eric Delwart
Journal:  Virus Genes       Date:  2017-10-17       Impact factor: 2.332

5.  First report of molecular and phylogenetic analysis of Physaloptera praeputialis in naturally infected stray cats from India.

Authors:  B R Maharana; Snehil Gupta; Surbhi Gupta; A Ganguly; Binod Kumar; G A Chandratre; R S Bisla
Journal:  Parasitol Res       Date:  2021-04-24       Impact factor: 2.289

6.  Population genetic structure and phenotypic diversity of Aspidodera raillieti (Nematoda: Heterakoidea), a parasite of Didelphini marsupials in Brazil's South and Southeast Atlantic Forest.

Authors:  Karina Varella; Roberto do Val Vilela; Rosana Gentile; Thiago Dos Santos Cardoso; Sócrates Fraga da Costa-Neto; Arnaldo Maldonado Júnior
Journal:  Parasit Vectors       Date:  2022-06-13       Impact factor: 4.047

7.  Molecular detection of Metastrongylus salmi eggs from pigs in low-resource communities in the state of Piauí, northeastern Brazil.

Authors:  Polyanna A A Bacelar; Lauren H Jaeger; Deiviane A Calegar; Jéssica P Santos; Beatriz Coronato-Nunes; Elis R C Reis; Márcio N Bóia; Kerla J L Monteiro; Filipe A Carvalho-Costa
Journal:  J Vet Diagn Invest       Date:  2022-05-24       Impact factor: 1.569

8.  Discovery and Identification of Meloidogyne Species Using COI DNA Barcoding.

Authors:  Thomas Powers; Timothy Harris; Rebecca Higgins; Peter Mullin; Kirsten Powers
Journal:  J Nematol       Date:  2018       Impact factor: 1.402

9.  Environmental status assessment using DNA metabarcoding: towards a genetics based Marine Biotic Index (gAMBI).

Authors:  Eva Aylagas; Angel Borja; Naiara Rodríguez-Ezpeleta
Journal:  PLoS One       Date:  2014-03-06       Impact factor: 3.240

10.  Genomic signal processing for DNA sequence clustering.

Authors:  Gerardo Mendizabal-Ruiz; Israel Román-Godínez; Sulema Torres-Ramos; Ricardo A Salido-Ruiz; Hugo Vélez-Pérez; J Alejandro Morales
Journal:  PeerJ       Date:  2018-01-24       Impact factor: 2.984

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