Literature DB >> 23432310

Intrachain dynamics of large dsDNA confined to slitlike channels.

Jeremy J Jones1, Johan R C van der Maarel, Patrick S Doyle.   

Abstract

Exploration of intrachain hydrodynamics of dsDNA within channels has been limited to indirect analysis of global coil dynamics. In this Letter, we isolate hydrodynamic interactions within single molecules of dsDNA confined to slitlike channels by making use of density covariance measurements. We show that the strength of hydrodynamic interactions in DNA is dependent on the intrachain correlation length and that screening by symmetry in slitlike confinement results in a screening length that is proportional channel height. Moreover, we directly show the partial draining nature of the blobs formed by dsDNA in slits and predict under what conditions a dsDNA blob should obey nondraining Zimm behavior.

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Year:  2013        PMID: 23432310     DOI: 10.1103/PhysRevLett.110.068101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  1 in total

1.  Spatial confinement induces hairpins in nicked circular DNA.

Authors:  Aleksandre Japaridze; Enzo Orlandini; Kathleen Beth Smith; Lucas Gmür; Francesco Valle; Cristian Micheletti; Giovanni Dietler
Journal:  Nucleic Acids Res       Date:  2017-05-05       Impact factor: 16.971

  1 in total

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